Wall clock time and date at job start Tue Mar 31 2020 13:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47150 * 2 1 4 4 C 1.50699 * 115.55033 * 294.73636 * 3 2 1 5 5 O 1.21283 * 120.00284 * 99.32864 * 4 3 2 6 6 N 1.34777 * 120.00131 * 279.33022 * 4 3 2 7 7 C 1.46503 * 120.00140 * 174.98410 * 6 4 3 8 8 H 1.08998 * 110.28620 * 327.12684 * 7 6 4 9 9 C 1.54264 * 110.32211 * 89.35950 * 7 6 4 10 10 C 1.54378 * 105.05667 * 118.89582 * 9 7 6 11 11 N 1.48563 * 104.59763 * 23.85264 * 10 9 7 12 12 C 1.46901 * 111.00076 * 200.95796 * 11 10 9 13 13 C 1.50700 * 109.46955 * 285.41998 * 12 11 10 14 14 O 1.21293 * 120.00023 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99787 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99865 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00078 * 359.97438 * 16 15 13 18 18 C 1.38951 * 119.99780 * 180.02562 * 16 15 13 19 19 N 1.31419 * 120.00177 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00122 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47008 * 269.99983 * 20 18 16 22 22 H 1.48500 * 109.47035 * 29.99823 * 20 18 16 23 23 H 1.48496 * 109.47186 * 150.00340 * 20 18 16 24 24 C 1.48556 * 104.22048 * 320.51698 * 11 10 9 25 25 H 1.08997 * 110.41005 * 280.70056 * 24 11 10 26 26 C 1.53001 * 110.41212 * 158.37872 * 24 11 10 27 27 C 1.52995 * 117.51460 * 80.43713 * 3 2 1 28 28 C 1.52998 * 117.49873 * 149.06715 * 3 2 1 29 29 H 1.08996 * 109.47042 * 295.68849 * 1 2 3 30 30 H 1.09003 * 109.47202 * 55.68645 * 1 2 3 31 31 H 1.09000 * 109.47021 * 175.68567 * 1 2 3 32 32 H 1.09006 * 109.46841 * 240.00472 * 2 1 3 33 33 H 1.08995 * 109.47381 * 120.00411 * 2 1 3 34 34 H 0.96998 * 120.00169 * 354.98671 * 6 4 3 35 35 H 1.08991 * 110.32527 * 237.79075 * 9 7 6 36 36 H 1.09002 * 110.32030 * 359.90031 * 9 7 6 37 37 H 1.09005 * 110.41396 * 265.07069 * 10 9 7 38 38 H 1.09006 * 110.41125 * 142.63120 * 10 9 7 39 39 H 1.09001 * 109.46913 * 165.42450 * 12 11 10 40 40 H 1.08997 * 109.47005 * 45.41635 * 12 11 10 41 41 H 0.97004 * 119.99932 * 359.97438 * 15 13 12 42 42 H 0.96994 * 120.00296 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.47032 * 61.45273 * 26 24 11 44 44 H 1.08994 * 109.47053 * 181.45218 * 26 24 11 45 45 H 1.09000 * 109.47166 * 301.45105 * 26 24 11 46 46 H 1.09005 * 117.49862 * 214.96777 * 27 3 2 47 47 H 1.09000 * 117.50538 * 359.97438 * 27 3 2 48 48 H 1.09002 * 117.49620 * 359.97438 * 28 3 2 49 49 H 1.08991 * 117.49947 * 144.97350 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7203 2.2450 -1.2349 5 8 0.7844 3.0163 -1.2314 6 7 2.4745 2.1055 -2.3431 7 6 2.0995 2.8013 -3.5767 8 1 1.0150 2.8820 -3.6503 9 6 2.7473 4.2006 -3.6207 10 6 3.6512 4.1849 -4.8720 11 7 3.0629 3.1373 -5.7458 12 6 4.0482 2.6505 -6.7206 13 6 4.2419 3.6857 -7.7986 14 8 3.6200 4.7263 -7.7590 15 7 5.1054 3.4546 -8.8073 16 6 5.2812 4.3961 -9.7883 17 1 4.7275 5.3227 -9.7530 18 6 6.1711 4.1577 -10.8285 19 7 6.3393 5.0599 -11.7692 20 14 7.1283 2.5547 -10.8899 21 1 8.4114 2.7161 -10.1599 22 1 6.3293 1.4764 -10.2542 23 1 7.4052 2.1974 -12.3044 24 6 2.6665 2.0579 -4.8052 25 1 3.5346 1.4627 -4.5220 26 6 1.5934 1.1681 -5.4357 27 6 2.0631 2.1840 1.3380 28 6 3.3731 1.7205 0.6976 29 1 -0.3633 0.4455 0.9261 30 1 -0.3634 0.5793 -0.8488 31 1 -0.3633 -1.0248 -0.0773 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.2655 1.5445 -2.3241 35 1 1.9810 4.9697 -3.7168 36 1 3.3428 4.3704 -2.7236 37 1 4.6735 3.9226 -4.5994 38 1 3.6267 5.1538 -5.3709 39 1 3.6895 1.7233 -7.1676 40 1 4.9976 2.4680 -6.2174 41 1 5.6024 2.6222 -8.8392 42 1 6.9607 4.8936 -12.4951 43 1 1.9933 0.6976 -6.3339 44 1 1.2957 0.3981 -4.7240 45 1 0.7267 1.7747 -5.6984 46 1 1.8471 3.2524 1.3252 47 1 1.7145 1.6445 2.2187 48 1 3.8865 0.8758 1.1569 49 1 4.0189 2.4835 0.2632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689316597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:23 Heat of formation + Delta-G solvation = -67.708890 kcal Electronic energy + Delta-G solvation = -27874.507895 eV Core-core repulsion = 24029.177318 eV Total energy + Delta-G solvation = -3845.330577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55866 -40.61576 -39.47741 -37.82972 -36.04903 -35.40030 -33.74764 -32.81083 -32.46510 -32.07031 -28.34651 -26.81755 -25.71281 -25.24256 -23.77166 -23.20242 -22.21496 -21.56580 -21.20231 -20.26655 -20.11051 -17.92892 -17.66938 -17.55424 -16.74214 -16.61814 -16.36417 -16.30990 -15.89571 -15.37558 -15.24826 -14.99496 -14.77477 -14.63606 -14.52307 -14.24904 -14.13252 -13.89476 -13.62337 -13.36926 -13.01506 -12.89446 -12.82693 -12.62789 -12.46944 -12.42176 -12.39397 -12.37983 -12.12716 -12.05470 -11.96946 -11.72008 -11.47938 -11.34433 -10.96180 -10.70704 -10.42823 -10.23181 -10.12657 -9.40227 -8.39849 -6.00843 1.30641 1.36595 1.45703 1.56205 1.98355 1.98973 2.24381 2.65832 2.73155 3.15918 3.21913 3.38348 3.61992 3.71524 3.76906 3.90841 3.99253 4.04355 4.11726 4.16707 4.29419 4.35575 4.40805 4.43386 4.47094 4.56438 4.63479 4.67979 4.75749 4.80863 4.86251 4.97536 5.00672 5.01961 5.05386 5.09010 5.10036 5.20030 5.21960 5.35141 5.39086 5.41824 5.54167 5.85177 5.93014 6.03288 6.53303 6.61590 6.90474 7.23555 7.41788 8.00322 8.78036 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.002362 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.549637 B =11852.701479 C =12018.642291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.072 4.072 3 C -0.165 4.165 4 C 0.549 3.451 5 O -0.580 6.580 6 N -0.703 5.703 7 C 0.155 3.845 8 H 0.078 0.922 9 C -0.124 4.124 10 C 0.041 3.959 11 N -0.507 5.507 12 C 0.045 3.955 13 C 0.452 3.548 14 O -0.608 6.608 15 N -0.593 5.593 16 C -0.326 4.326 17 H 0.052 0.948 18 C -0.018 4.018 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.256 1.256 22 H -0.229 1.229 23 H -0.277 1.277 24 C 0.061 3.939 25 H 0.088 0.912 26 C -0.135 4.135 27 C -0.156 4.156 28 C -0.142 4.142 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.416 0.584 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.390 0.610 42 H 0.278 0.722 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.079 0.921 47 H 0.120 0.880 48 H 0.131 0.869 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 -19.621 27.409 33.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.168 4.168 4 C 0.337 3.663 5 O -0.459 6.459 6 N -0.355 5.355 7 C 0.049 3.951 8 H 0.096 0.904 9 C -0.164 4.164 10 C -0.087 4.087 11 N -0.232 5.232 12 C -0.086 4.086 13 C 0.240 3.760 14 O -0.492 6.492 15 N -0.235 5.235 16 C -0.455 4.455 17 H 0.070 0.930 18 C -0.217 4.217 19 N -0.578 5.578 20 Si 0.787 3.213 21 H -0.181 1.181 22 H -0.152 1.152 23 H -0.202 1.202 24 C -0.047 4.047 25 H 0.106 0.894 26 C -0.192 4.192 27 C -0.194 4.194 28 C -0.179 4.179 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.253 0.747 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.138 0.862 48 H 0.149 0.851 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.973 -18.117 26.915 32.687 hybrid contribution 1.307 -0.074 -0.604 1.442 sum -2.665 -18.191 26.312 32.099 Atomic orbital electron populations 1.21737 0.96172 1.01835 1.01230 1.21033 0.95357 0.90194 1.04348 1.21505 1.05716 0.98017 0.91584 1.20105 0.81033 0.80944 0.84259 1.90704 1.31934 1.39090 1.84201 1.45930 1.29860 1.50059 1.09614 1.21481 0.99622 0.90815 0.83189 0.90367 1.22632 0.98943 0.97531 0.97266 1.23028 0.96642 0.96604 0.92403 1.64967 1.36558 1.08755 1.12919 1.22019 0.96734 0.96784 0.93070 1.20901 0.81393 0.89342 0.84396 1.90552 1.50101 1.30270 1.78279 1.42019 1.40074 1.18433 1.23003 1.18972 1.24220 0.99319 1.03033 0.92978 1.26159 0.98272 1.02919 0.94306 1.69816 1.37375 1.37258 1.13334 0.85340 0.79252 0.77655 0.79097 1.18077 1.15170 1.20192 1.22893 0.99047 0.92268 0.90476 0.89422 1.21728 0.97690 0.98550 1.01266 1.23035 1.01432 1.00206 0.94685 1.23254 0.89216 1.04211 1.01239 0.92814 0.95193 0.91072 0.90134 0.88477 0.74680 0.92369 0.89914 0.92359 0.92676 0.86038 0.89405 0.77466 0.91211 0.91506 0.90177 0.93511 0.90284 0.86194 0.85106 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.84 71.98 0.71 -1.27 16 2 C -0.07 -0.65 5.81 30.60 0.18 -0.48 16 3 C -0.17 -2.12 1.87 -52.93 -0.10 -2.22 16 4 C 0.55 11.11 6.29 87.66 0.55 11.66 16 5 O -0.58 -17.63 16.71 -3.04 -0.05 -17.68 16 6 N -0.70 -11.35 5.02 -438.29 -2.20 -13.55 16 7 C 0.15 3.40 2.93 45.89 0.13 3.54 16 8 H 0.08 2.13 7.34 -2.39 -0.02 2.12 16 9 C -0.12 -3.19 6.79 31.49 0.21 -2.98 16 10 C 0.04 1.22 5.92 86.45 0.51 1.74 16 11 N -0.51 -15.01 4.66 -861.23 -4.01 -19.02 16 12 C 0.05 1.34 5.27 85.56 0.45 1.79 16 13 C 0.45 20.36 7.63 87.66 0.67 21.03 16 14 O -0.61 -34.24 14.80 -3.07 -0.05 -34.29 16 15 N -0.59 -27.76 5.09 -306.98 -1.56 -29.33 16 16 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 17 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 18 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 19 N -0.94 -56.85 13.96 21.66 0.30 -56.54 16 20 Si 0.97 38.32 27.74 68.60 1.90 40.22 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 23 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 24 C 0.06 1.23 2.58 45.06 0.12 1.35 16 25 H 0.09 1.23 7.61 -2.39 -0.02 1.21 16 26 C -0.13 -2.54 9.34 71.98 0.67 -1.87 16 27 C -0.16 -1.93 9.88 30.59 0.30 -1.63 16 28 C -0.14 -1.16 9.92 30.59 0.30 -0.85 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.03 0.55 7.58 -2.39 -0.02 0.53 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.10 0.47 8.09 -2.39 -0.02 0.45 16 34 H 0.42 4.01 8.38 -92.71 -0.78 3.23 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.87 7.95 -2.39 -0.02 1.85 16 37 H 0.06 1.48 7.75 -2.38 -0.02 1.46 16 38 H 0.05 2.13 7.24 -2.38 -0.02 2.11 16 39 H 0.12 2.90 7.17 -2.39 -0.02 2.88 16 40 H 0.09 2.02 7.77 -2.39 -0.02 2.00 16 41 H 0.39 14.84 5.76 -92.71 -0.53 14.31 16 42 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.07 1.18 7.30 -2.39 -0.02 1.17 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 46 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -84.11 395.46 -0.05 -84.16 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.42 Total: 35.09 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.03 Total: 10.94 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -7.47 Total: -118.44 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.10 Total: -51.97 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -84.11 -0.05 -84.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689316597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.449 kcal (2) G-P(sol) polarization free energy of solvation -84.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds