Wall clock time and date at job start Tue Mar 31 2020 14:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47252 * 2 1 4 4 C 1.50700 * 119.99991 * 275.00101 * 3 2 1 5 5 C 1.33002 * 120.00209 * 94.99917 * 3 2 1 6 6 C 1.47096 * 119.99685 * 172.71735 * 5 3 2 7 7 O 1.21614 * 120.00646 * 353.31221 * 6 5 3 8 8 N 1.34783 * 119.99677 * 173.31764 * 6 5 3 9 9 C 1.46498 * 119.99898 * 179.72222 * 8 6 5 10 10 C 1.53004 * 109.46883 * 180.27882 * 9 8 6 11 11 H 1.09004 * 109.46807 * 295.00007 * 10 9 8 12 12 N 1.46897 * 109.47357 * 55.00009 * 10 9 8 13 13 C 1.46901 * 110.99788 * 206.35320 * 12 10 9 14 14 C 1.50704 * 109.46955 * 182.30352 * 13 12 10 15 15 O 1.21291 * 119.99976 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00229 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99882 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00175 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00167 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00030 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47243 * 119.99811 * 21 19 17 24 24 H 1.48501 * 109.47010 * 240.00049 * 21 19 17 25 25 C 1.52998 * 109.47215 * 175.00254 * 10 9 8 26 26 C 1.52995 * 117.50354 * 130.98978 * 25 10 9 27 27 C 1.53001 * 117.50277 * 62.32651 * 25 10 9 28 28 H 1.08993 * 109.46910 * 59.99740 * 1 2 3 29 29 H 1.08998 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46642 * 299.99921 * 1 2 3 31 31 H 1.09003 * 109.47149 * 240.00022 * 2 1 3 32 32 H 1.09006 * 109.47116 * 119.99705 * 2 1 3 33 33 H 1.09005 * 109.47300 * 264.31833 * 4 3 2 34 34 H 1.09004 * 109.47235 * 24.32021 * 4 3 2 35 35 H 1.09000 * 109.47500 * 144.31694 * 4 3 2 36 36 H 1.07999 * 119.99514 * 352.71467 * 5 3 2 37 37 H 0.97004 * 120.00078 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.47140 * 300.27180 * 9 8 6 39 39 H 1.08992 * 109.47197 * 60.27466 * 9 8 6 40 40 H 1.00890 * 111.00312 * 82.39802 * 12 10 9 41 41 H 1.09003 * 109.47098 * 302.29872 * 13 12 10 42 42 H 1.08998 * 109.47598 * 62.30021 * 13 12 10 43 43 H 0.97009 * 119.99974 * 0.02562 * 16 14 13 44 44 H 0.97001 * 120.00356 * 179.97438 * 20 19 17 45 45 H 1.09002 * 115.54920 * 276.66355 * 25 10 9 46 46 H 1.08996 * 117.49695 * 0.02562 * 26 25 10 47 47 H 1.09001 * 117.49925 * 145.01801 * 26 25 10 48 48 H 1.08994 * 117.50249 * 214.98631 * 27 25 10 49 49 H 1.09005 * 117.49469 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1691 -1.3001 5 6 2.3487 2.0144 1.1474 6 6 2.9882 3.3390 1.1383 7 8 3.3382 3.8382 0.0861 8 7 3.1863 3.9996 2.2964 9 6 3.8286 5.3162 2.2880 10 6 3.9381 5.8394 3.7216 11 1 2.9393 6.0084 4.1240 12 7 4.6395 4.8507 4.5514 13 6 4.2447 4.9718 5.9612 14 6 5.0246 3.9822 6.7880 15 8 5.8296 3.2479 6.2552 16 7 4.8275 3.9131 8.1195 17 6 5.5373 3.0132 8.8717 18 1 6.2547 2.3599 8.3974 19 6 5.3336 2.9415 10.2444 20 7 4.4611 3.7367 10.8216 21 14 6.3013 1.7159 11.2694 22 1 7.2129 0.9436 10.3875 23 1 7.0979 2.4436 12.2898 24 1 5.3620 0.7855 11.9457 25 6 4.7191 7.1550 3.7262 26 6 4.1124 8.3342 4.4892 27 6 4.1198 8.3350 2.9585 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 3.2050 2.0916 -1.6521 34 1 1.5046 1.7391 -2.0432 35 1 1.9233 3.2180 -1.1456 36 1 2.1360 1.5237 2.0857 37 1 2.9075 3.6013 3.1358 38 1 4.8254 5.2314 1.8551 39 1 3.2319 6.0078 1.6934 40 1 5.6394 4.9355 4.4474 41 1 4.4539 5.9826 6.3116 42 1 3.1787 4.7668 6.0590 43 1 4.1833 4.5001 8.5456 44 1 4.3186 3.6864 11.7798 45 1 5.8047 7.0573 3.7313 46 1 3.1570 8.1725 4.9884 47 1 4.7988 9.0123 4.9962 48 1 4.8111 9.0138 2.4590 49 1 3.1689 8.1742 2.4506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690149249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:48 Heat of formation + Delta-G solvation = -44.954537 kcal Electronic energy + Delta-G solvation = -26976.996689 eV Core-core repulsion = 23132.652815 eV Total energy + Delta-G solvation = -3844.343874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85783 -38.81986 -37.86920 -36.35099 -35.04593 -34.10753 -33.48619 -31.26646 -31.12419 -29.59408 -27.67954 -26.06918 -24.52419 -23.84078 -22.96506 -22.42100 -20.77857 -20.54932 -19.29995 -18.60977 -17.90974 -16.94649 -16.49014 -15.96762 -15.48865 -15.36362 -15.12406 -14.69354 -14.56802 -14.43653 -14.24619 -14.02609 -13.87094 -13.51388 -13.20729 -13.16343 -12.73232 -12.42699 -12.39383 -12.21056 -11.96045 -11.74984 -11.71231 -11.57470 -11.53289 -11.52140 -11.31569 -11.11963 -11.08450 -10.63099 -10.36575 -10.25992 -10.16286 -9.54904 -9.51815 -9.24526 -8.74240 -8.50816 -8.13716 -7.99098 -6.44724 -3.85488 1.35866 3.14185 3.25112 3.30768 3.32471 3.40574 3.66955 3.87621 4.03237 4.26199 4.49387 4.62176 4.69592 4.74583 4.86103 5.01349 5.05306 5.08210 5.08812 5.15637 5.22980 5.27498 5.34524 5.40206 5.49578 5.51624 5.63673 5.68003 5.70560 5.74324 5.75338 5.79201 5.87491 5.93091 5.97197 5.98038 6.02149 6.05301 6.23940 6.44421 6.47305 6.62730 7.12632 7.52713 7.57650 7.75199 8.03481 8.41177 8.57909 9.15165 9.51252 10.02386 10.73013 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.002839 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.476941 B = 9858.862967 C =12340.150910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.035 4.035 4 C -0.120 4.120 5 C -0.226 4.226 6 C 0.543 3.457 7 O -0.553 6.553 8 N -0.709 5.709 9 C 0.139 3.861 10 C 0.104 3.896 11 H 0.083 0.917 12 N -0.658 5.658 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.182 4.182 26 C -0.175 4.175 27 C -0.174 4.174 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.409 0.591 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.354 0.646 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.493 3.236 -17.720 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.037 4.037 4 C -0.176 4.176 5 C -0.247 4.247 6 C 0.333 3.667 7 O -0.435 6.435 8 N -0.360 5.360 9 C 0.014 3.986 10 C -0.007 4.007 11 H 0.101 0.899 12 N -0.290 5.290 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.468 6.468 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.202 4.202 26 C -0.212 4.212 27 C -0.212 4.212 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.245 0.755 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.175 0.825 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.126 0.874 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.186 2.598 -18.708 20.585 hybrid contribution 0.462 0.477 1.823 1.940 sum -7.723 3.075 -16.885 18.820 Atomic orbital electron populations 1.21721 0.94356 1.01985 1.02358 1.20767 0.96570 0.92770 1.03387 1.22496 0.91097 0.94757 0.95393 1.21093 1.02133 1.01091 0.93325 1.22437 1.06674 0.96603 0.98996 1.18518 0.79243 0.85385 0.83543 1.90728 1.52427 1.69521 1.30802 1.45725 1.61098 1.19711 1.09435 1.21190 0.98122 0.83867 0.95371 1.21456 0.97748 0.87992 0.93496 0.89892 1.60262 1.13216 1.49055 1.06490 1.21717 1.00278 0.97905 0.88367 1.19815 0.87081 0.87558 0.83032 1.90536 1.38885 1.45836 1.71499 1.41869 1.37742 1.34962 1.05407 1.19747 1.19341 1.14621 0.89107 0.87885 1.25260 0.97333 0.98226 0.97117 1.69615 1.34495 1.38457 1.11729 0.85811 0.79269 0.79892 0.79452 1.19201 1.20767 1.20728 1.23135 1.00010 0.90840 1.06251 1.23016 1.02770 1.01003 0.94393 1.22907 1.02847 1.01044 0.94382 0.92473 0.92191 0.92316 0.90470 0.90541 0.90472 0.93015 0.89444 0.85598 0.75544 0.91568 0.91510 0.82511 0.93439 0.89776 0.77486 0.91913 0.87421 0.88648 0.88757 0.88818 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.10 -0.78 6.08 -27.88 -0.17 -0.95 16 3 C -0.04 -0.37 5.36 -101.16 -0.54 -0.91 16 4 C -0.12 -1.27 8.47 36.01 0.30 -0.97 16 5 C -0.23 -2.63 9.60 -37.81 -0.36 -2.99 16 6 C 0.54 7.49 7.60 -12.66 -0.10 7.40 16 7 O -0.55 -8.90 13.31 5.27 0.07 -8.83 16 8 N -0.71 -8.98 5.39 -61.49 -0.33 -9.32 16 9 C 0.14 1.67 5.17 -4.04 -0.02 1.65 16 10 C 0.10 1.18 2.35 -67.71 -0.16 1.02 16 11 H 0.08 0.90 7.59 -51.93 -0.39 0.51 16 12 N -0.66 -9.65 5.36 -107.99 -0.58 -10.23 16 13 C 0.05 0.81 5.96 -4.97 -0.03 0.78 16 14 C 0.44 9.96 7.81 -10.99 -0.09 9.87 16 15 O -0.58 -15.37 15.73 5.55 0.09 -15.28 16 16 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 17 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 21 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.18 -1.89 5.07 -90.62 -0.46 -2.35 16 26 C -0.17 -1.68 10.18 -26.70 -0.27 -1.95 16 27 C -0.17 -1.55 9.83 -26.69 -0.26 -1.81 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 33 H 0.08 0.88 8.02 -51.93 -0.42 0.47 16 34 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.09 1.08 6.18 -51.93 -0.32 0.76 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.41 5.03 8.12 -40.82 -0.33 4.70 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.77 7.62 -51.93 -0.40 0.37 16 40 H 0.35 5.68 7.94 -39.30 -0.31 5.37 16 41 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 42 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 44 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.11 1.18 7.94 -51.93 -0.41 0.77 16 46 H 0.10 0.89 8.06 -51.93 -0.42 0.47 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.10 0.80 7.81 -51.93 -0.41 0.40 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -31.42 407.50 -9.29 -40.72 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -8.30 Total: 18.12 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.03 Total: 0.28 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.24 Total: -56.95 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.16 Total: -24.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.42 -9.29 -40.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690149249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.239 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds