Wall clock time and date at job start Tue Mar 31 2020 14:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47252 * 2 1 4 4 C 1.50700 * 119.99991 * 275.00101 * 3 2 1 5 5 C 1.33002 * 120.00209 * 94.99917 * 3 2 1 6 6 C 1.47096 * 119.99685 * 172.71735 * 5 3 2 7 7 O 1.21614 * 120.00646 * 353.31221 * 6 5 3 8 8 N 1.34783 * 119.99677 * 173.31764 * 6 5 3 9 9 C 1.46498 * 119.99898 * 179.72222 * 8 6 5 10 10 C 1.53004 * 109.46883 * 180.27882 * 9 8 6 11 11 H 1.09004 * 109.46807 * 295.00007 * 10 9 8 12 12 N 1.46897 * 109.47357 * 55.00009 * 10 9 8 13 13 C 1.46901 * 110.99788 * 206.35320 * 12 10 9 14 14 C 1.50704 * 109.46955 * 182.30352 * 13 12 10 15 15 O 1.21291 * 119.99976 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00229 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99882 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00175 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00167 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00030 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47243 * 119.99811 * 21 19 17 24 24 H 1.48501 * 109.47010 * 240.00049 * 21 19 17 25 25 C 1.52998 * 109.47215 * 175.00254 * 10 9 8 26 26 C 1.52995 * 117.50354 * 130.98978 * 25 10 9 27 27 C 1.53001 * 117.50277 * 62.32651 * 25 10 9 28 28 H 1.08993 * 109.46910 * 59.99740 * 1 2 3 29 29 H 1.08998 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46642 * 299.99921 * 1 2 3 31 31 H 1.09003 * 109.47149 * 240.00022 * 2 1 3 32 32 H 1.09006 * 109.47116 * 119.99705 * 2 1 3 33 33 H 1.09005 * 109.47300 * 264.31833 * 4 3 2 34 34 H 1.09004 * 109.47235 * 24.32021 * 4 3 2 35 35 H 1.09000 * 109.47500 * 144.31694 * 4 3 2 36 36 H 1.07999 * 119.99514 * 352.71467 * 5 3 2 37 37 H 0.97004 * 120.00078 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.47140 * 300.27180 * 9 8 6 39 39 H 1.08992 * 109.47197 * 60.27466 * 9 8 6 40 40 H 1.00890 * 111.00312 * 82.39802 * 12 10 9 41 41 H 1.09003 * 109.47098 * 302.29872 * 13 12 10 42 42 H 1.08998 * 109.47598 * 62.30021 * 13 12 10 43 43 H 0.97009 * 119.99974 * 0.02562 * 16 14 13 44 44 H 0.97001 * 120.00356 * 179.97438 * 20 19 17 45 45 H 1.09002 * 115.54920 * 276.66355 * 25 10 9 46 46 H 1.08996 * 117.49695 * 0.02562 * 26 25 10 47 47 H 1.09001 * 117.49925 * 145.01801 * 26 25 10 48 48 H 1.08994 * 117.50249 * 214.98631 * 27 25 10 49 49 H 1.09005 * 117.49469 * 0.02562 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1763 2.1691 -1.3001 5 6 2.3487 2.0144 1.1474 6 6 2.9882 3.3390 1.1383 7 8 3.3382 3.8382 0.0861 8 7 3.1863 3.9996 2.2964 9 6 3.8286 5.3162 2.2880 10 6 3.9381 5.8394 3.7216 11 1 2.9393 6.0084 4.1240 12 7 4.6395 4.8507 4.5514 13 6 4.2447 4.9718 5.9612 14 6 5.0246 3.9822 6.7880 15 8 5.8296 3.2479 6.2552 16 7 4.8275 3.9131 8.1195 17 6 5.5373 3.0132 8.8717 18 1 6.2547 2.3599 8.3974 19 6 5.3336 2.9415 10.2444 20 7 4.4611 3.7367 10.8216 21 14 6.3013 1.7159 11.2694 22 1 7.2129 0.9436 10.3875 23 1 7.0979 2.4436 12.2898 24 1 5.3620 0.7855 11.9457 25 6 4.7191 7.1550 3.7262 26 6 4.1124 8.3342 4.4892 27 6 4.1198 8.3350 2.9585 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 3.2050 2.0916 -1.6521 34 1 1.5046 1.7391 -2.0432 35 1 1.9233 3.2180 -1.1456 36 1 2.1360 1.5237 2.0857 37 1 2.9075 3.6013 3.1358 38 1 4.8254 5.2314 1.8551 39 1 3.2319 6.0078 1.6934 40 1 5.6394 4.9355 4.4474 41 1 4.4539 5.9826 6.3116 42 1 3.1787 4.7668 6.0590 43 1 4.1833 4.5001 8.5456 44 1 4.3186 3.6864 11.7798 45 1 5.8047 7.0573 3.7313 46 1 3.1570 8.1725 4.9884 47 1 4.7988 9.0123 4.9962 48 1 4.8111 9.0138 2.4590 49 1 3.1689 8.1742 2.4506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690149249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:48 Heat of formation + Delta-G solvation = -66.249850 kcal Electronic energy + Delta-G solvation = -26977.920123 eV Core-core repulsion = 23132.652815 eV Total energy + Delta-G solvation = -3845.267308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90461 -40.22751 -39.21690 -37.15447 -36.19839 -35.81387 -34.79645 -33.24425 -31.88128 -30.68077 -28.70480 -27.57015 -25.81528 -24.91779 -23.88385 -23.16402 -21.78620 -21.47369 -21.01013 -19.91453 -19.50867 -17.91692 -17.88283 -17.06309 -16.84233 -16.48580 -16.37047 -16.11830 -15.80822 -15.57362 -15.40359 -15.11934 -14.94185 -14.78767 -14.31931 -14.12474 -13.90148 -13.55867 -13.49399 -13.41361 -13.14665 -12.99792 -12.94783 -12.69355 -12.57834 -12.43751 -12.39492 -12.24735 -12.19676 -12.11859 -11.74328 -11.50633 -11.41829 -10.99989 -10.55822 -10.32600 -10.19334 -10.00103 -9.72333 -9.34870 -8.46223 -5.94334 0.45365 1.36618 1.42307 1.55949 2.07251 2.28615 2.33346 2.41213 2.84944 2.91985 3.21695 3.51725 3.67894 3.83255 3.91846 3.93878 4.06035 4.16773 4.27003 4.32979 4.35517 4.39482 4.44714 4.48463 4.56948 4.62419 4.67346 4.73824 4.79067 4.83220 4.86878 4.92605 5.03071 5.04189 5.10971 5.16598 5.20207 5.27115 5.37196 5.42155 5.57282 5.63912 5.65759 5.88636 6.09402 6.32935 6.61212 6.72464 7.14148 7.37211 7.58162 8.13554 8.71323 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009259 B = 0.002839 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.476941 B = 9858.862967 C =12340.150910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.025 4.025 4 C -0.118 4.118 5 C -0.247 4.247 6 C 0.536 3.464 7 O -0.583 6.583 8 N -0.707 5.707 9 C 0.143 3.857 10 C 0.117 3.883 11 H 0.097 0.903 12 N -0.667 5.667 13 C 0.068 3.932 14 C 0.439 3.561 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.331 4.331 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.271 1.271 25 C -0.195 4.195 26 C -0.174 4.174 27 C -0.162 4.162 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.411 0.589 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.345 0.655 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 3.289 -17.802 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.027 4.027 4 C -0.174 4.174 5 C -0.268 4.268 6 C 0.327 3.673 7 O -0.467 6.467 8 N -0.357 5.357 9 C 0.019 3.981 10 C 0.006 3.994 11 H 0.115 0.885 12 N -0.298 5.298 13 C -0.064 4.064 14 C 0.226 3.774 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.215 4.215 26 C -0.211 4.211 27 C -0.199 4.199 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.247 0.753 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.164 0.836 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.120 0.880 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.509 2.678 -18.775 21.215 hybrid contribution 0.862 0.476 1.747 2.006 sum -8.647 3.154 -17.028 19.356 Atomic orbital electron populations 1.21713 0.93307 1.02895 1.02287 1.20833 0.97353 0.91003 1.04186 1.22801 0.89355 0.95752 0.94790 1.21041 1.02005 1.00228 0.94175 1.22488 1.08142 0.96025 1.00097 1.18930 0.79017 0.86068 0.83303 1.90711 1.53895 1.70395 1.31714 1.45758 1.60710 1.19877 1.09310 1.21177 0.97282 0.83867 0.95812 1.21381 0.98022 0.87654 0.92299 0.88498 1.60241 1.12819 1.50897 1.05832 1.21560 1.00184 0.96544 0.88155 1.20897 0.86300 0.87476 0.82691 1.90509 1.40656 1.47659 1.72189 1.41926 1.37972 1.34973 1.06164 1.19667 1.20347 1.15897 0.90141 0.90471 1.25990 0.98002 0.99645 0.97549 1.69668 1.34990 1.39146 1.12300 0.84914 0.78048 0.77870 0.77785 1.19886 1.19706 1.19605 1.23005 0.99467 0.90796 1.08273 1.23088 1.02898 1.00123 0.94946 1.22975 1.03090 0.99690 0.94168 0.92131 0.90804 0.92843 0.89142 0.90303 0.91527 0.90583 0.91384 0.84464 0.75279 0.93320 0.90619 0.83576 0.91536 0.87448 0.76965 0.91342 0.88328 0.88016 0.88587 0.88048 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 71.98 0.71 -1.01 16 2 C -0.10 -1.37 6.08 29.85 0.18 -1.19 16 3 C -0.02 -0.50 5.36 -17.61 -0.09 -0.59 16 4 C -0.12 -2.45 8.47 71.24 0.60 -1.85 16 5 C -0.25 -5.66 9.60 23.43 0.22 -5.43 16 6 C 0.54 14.89 7.60 86.57 0.66 15.55 16 7 O -0.58 -19.15 13.31 -4.07 -0.05 -19.20 16 8 N -0.71 -17.74 5.39 -466.71 -2.51 -20.26 16 9 C 0.14 3.37 5.17 86.38 0.45 3.81 16 10 C 0.12 2.50 2.35 44.92 0.11 2.61 16 11 H 0.10 1.85 7.59 -2.38 -0.02 1.84 16 12 N -0.67 -19.11 5.36 -495.56 -2.66 -21.76 16 13 C 0.07 2.12 5.96 85.56 0.51 2.63 16 14 C 0.44 19.98 7.81 87.66 0.69 20.67 16 15 O -0.62 -33.61 15.73 -3.06 -0.05 -33.66 16 16 N -0.57 -28.52 5.29 -306.98 -1.62 -30.15 16 17 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 18 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 21 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 C -0.20 -3.80 5.07 -10.80 -0.05 -3.85 16 26 C -0.17 -2.96 10.18 30.62 0.31 -2.65 16 27 C -0.16 -2.55 9.83 30.62 0.30 -2.25 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.11 8.04 -2.38 -0.02 1.09 16 33 H 0.07 1.53 8.02 -2.38 -0.02 1.51 16 34 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.07 1.70 6.18 -2.39 -0.01 1.69 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.41 9.88 8.12 -92.71 -0.75 9.13 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.66 7.62 -2.39 -0.02 1.65 16 40 H 0.34 11.14 7.94 -89.70 -0.71 10.43 16 41 H 0.07 1.88 8.03 -2.39 -0.02 1.86 16 42 H 0.11 2.92 8.10 -2.39 -0.02 2.91 16 43 H 0.40 18.69 7.90 -92.70 -0.73 17.96 16 44 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 45 H 0.10 2.12 7.94 -2.39 -0.02 2.11 16 46 H 0.10 1.62 8.06 -2.39 -0.02 1.60 16 47 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.10 1.49 7.81 -2.38 -0.02 1.47 16 Total: -1.00 -68.58 407.50 0.06 -68.52 By element: Atomic # 1 Polarization: 53.19 SS G_CDS: -1.23 Total: 51.96 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.87 Total: 8.59 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -6.51 Total: -120.74 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -0.10 Total: -52.87 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -68.58 0.06 -68.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690149249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.271 kcal (2) G-P(sol) polarization free energy of solvation -68.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds