Wall clock time and date at job start Tue Mar 31 2020 13:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47373 * 2 1 4 4 C 1.50696 * 110.54101 * 308.68082 * 3 2 1 5 5 O 1.21278 * 120.00170 * 121.08248 * 4 3 2 6 6 N 1.34780 * 119.99945 * 301.08750 * 4 3 2 7 7 C 1.46928 * 120.62786 * 355.08973 * 6 4 3 8 8 C 1.53192 * 108.77745 * 233.58737 * 7 6 4 9 9 C 1.53041 * 109.30869 * 305.36942 * 8 7 6 10 10 C 1.53042 * 109.54178 * 61.36651 * 9 8 7 11 11 H 1.08994 * 109.49569 * 58.58055 * 10 9 8 12 12 C 1.52997 * 109.49920 * 178.65067 * 10 9 8 13 13 N 1.46509 * 109.47031 * 294.99634 * 12 10 9 14 14 C 1.36933 * 119.99830 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00514 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99472 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00543 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47309 * 60.00258 * 18 16 14 20 20 H 1.48504 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47076 * 299.99990 * 18 16 14 22 22 C 1.46922 * 120.63162 * 174.81269 * 6 4 3 23 23 C 1.54630 * 110.48978 * 186.06398 * 3 2 1 24 24 C 1.54480 * 101.76803 * 216.52985 * 23 3 2 25 25 N 1.46766 * 105.47149 * 25.41443 * 24 23 3 26 26 C 1.34419 * 111.30321 * 342.98494 * 25 24 23 27 27 O 1.21277 * 124.94118 * 180.37307 * 26 25 24 28 28 H 1.09002 * 109.46966 * 60.80358 * 1 2 3 29 29 H 1.08995 * 109.47029 * 180.80684 * 1 2 3 30 30 H 1.09002 * 109.47060 * 300.80509 * 1 2 3 31 31 H 1.09001 * 109.47386 * 240.00325 * 2 1 3 32 32 H 1.09006 * 109.47212 * 120.00537 * 2 1 3 33 33 H 1.08993 * 109.58978 * 353.37932 * 7 6 4 34 34 H 1.09007 * 109.58410 * 113.65702 * 7 6 4 35 35 H 1.09000 * 109.49881 * 65.31655 * 8 7 6 36 36 H 1.09001 * 109.50050 * 185.41803 * 8 7 6 37 37 H 1.09010 * 109.45802 * 181.38311 * 9 8 7 38 38 H 1.09002 * 109.46080 * 301.35364 * 9 8 7 39 39 H 1.09001 * 109.47599 * 54.99294 * 12 10 9 40 40 H 1.08999 * 109.47263 * 175.00165 * 12 10 9 41 41 H 0.97005 * 119.99727 * 0.02562 * 13 12 10 42 42 H 0.96996 * 120.00146 * 180.02562 * 17 16 14 43 43 H 1.08990 * 109.58745 * 246.20172 * 22 6 4 44 44 H 1.08997 * 109.58559 * 6.62659 * 22 6 4 45 45 H 1.08999 * 110.96862 * 98.40063 * 23 3 2 46 46 H 1.09005 * 110.96646 * 334.64963 * 23 3 2 47 47 H 1.08997 * 110.24525 * 144.41604 * 24 23 3 48 48 H 1.09000 * 110.24114 * 266.41431 * 24 23 3 49 49 H 0.97000 * 124.34311 * 163.01379 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3848 2.2350 -1.1016 5 8 0.7405 3.2271 -0.8342 6 7 1.5147 1.8413 -2.3840 7 6 2.3786 0.7056 -2.7345 8 6 3.3684 1.1539 -3.8145 9 6 2.5951 1.7437 -4.9962 10 6 1.8023 2.9669 -4.5298 11 1 2.4860 3.7059 -4.1123 12 6 1.0563 3.5756 -5.7188 13 7 2.0241 4.0892 -6.6915 14 6 1.5861 4.6822 -7.8455 15 1 0.5273 4.7717 -8.0384 16 6 2.5031 5.1683 -8.7673 17 7 3.7936 5.0587 -8.5324 18 14 1.9056 5.9779 -10.3411 19 1 1.0740 7.1612 -10.0043 20 1 3.0738 6.4077 -11.1511 21 1 1.0942 5.0079 -11.1195 22 6 0.7905 2.5356 -3.4573 23 6 3.5784 1.4726 -0.1530 24 6 3.9622 2.6613 0.7559 25 7 2.8816 2.7637 1.7437 26 6 1.7879 2.0931 1.3424 27 8 0.7504 2.0198 1.9659 28 1 -0.3633 0.5013 -0.8971 29 1 -0.3633 -1.0275 0.0145 30 1 -0.3633 0.5263 0.8827 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9259 0.3766 -1.8512 34 1 1.7684 -0.1146 -3.1128 35 1 4.0373 1.9101 -3.4037 36 1 3.9510 0.2968 -4.1523 37 1 3.2957 2.0409 -5.7766 38 1 1.9083 0.9949 -5.3908 39 1 0.4384 2.8113 -6.1901 40 1 0.4228 4.3917 -5.3711 41 1 2.9752 4.0084 -6.5184 42 1 4.4343 5.3987 -9.1764 43 1 0.0537 1.8626 -3.8957 44 1 0.2897 3.4143 -3.0511 45 1 3.8639 1.6642 -1.1874 46 1 4.0245 0.5457 0.2077 47 1 4.9113 2.4640 1.2542 48 1 4.0263 3.5784 0.1704 49 1 2.9480 3.2529 2.5787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690409859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:26 Heat of formation + Delta-G solvation = -55.834636 kcal Electronic energy + Delta-G solvation = -29255.020399 eV Core-core repulsion = 25410.204728 eV Total energy + Delta-G solvation = -3844.815671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81935 -39.49401 -37.53025 -36.67610 -35.35182 -34.43186 -32.58686 -31.78738 -30.53284 -29.80209 -27.80431 -25.73630 -25.53082 -23.25770 -22.93234 -22.66048 -22.04686 -21.08958 -19.73702 -18.81846 -17.69050 -17.28044 -16.92951 -16.51040 -15.75429 -15.31320 -14.96208 -14.72098 -14.51905 -14.38040 -14.23654 -14.00094 -13.80974 -13.60757 -13.43134 -13.32887 -13.13572 -12.82690 -12.71672 -12.44172 -12.16256 -12.07731 -11.91072 -11.71680 -11.36980 -11.20141 -11.07718 -10.88527 -10.81644 -10.60882 -10.37541 -10.22382 -10.05059 -9.92212 -9.75182 -9.62286 -9.38450 -8.87298 -8.64007 -6.91895 -5.76947 -3.05081 2.23037 2.44685 2.88389 3.12817 3.44444 3.48732 3.49757 3.78062 3.97750 4.10230 4.39219 4.55990 4.59241 4.69998 4.79112 4.87230 4.95691 5.03818 5.10486 5.13200 5.18770 5.26149 5.30939 5.39562 5.44035 5.49486 5.56079 5.58266 5.69936 5.80285 5.82977 5.85104 5.95761 6.05268 6.14656 6.19186 6.21009 6.43515 6.46420 6.50420 6.63981 6.72758 6.78825 6.88374 7.28439 7.70069 7.99176 8.04954 8.42292 9.53534 10.11114 10.46027 11.45999 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.002812 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.951747 B = 9955.825393 C =10030.994730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.117 4.117 4 C 0.541 3.459 5 O -0.528 6.528 6 N -0.601 5.601 7 C 0.091 3.909 8 C -0.136 4.136 9 C -0.112 4.112 10 C -0.105 4.105 11 H 0.074 0.926 12 C 0.159 3.841 13 N -0.730 5.730 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.119 3.881 23 C -0.136 4.136 24 C 0.100 3.900 25 N -0.730 5.730 26 C 0.551 3.449 27 O -0.512 6.512 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.021 0.979 40 H 0.020 0.980 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 -13.877 19.719 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C -0.124 4.124 4 C 0.327 3.673 5 O -0.404 6.404 6 N -0.334 5.334 7 C -0.031 4.031 8 C -0.174 4.174 9 C -0.149 4.149 10 C -0.125 4.125 11 H 0.092 0.908 12 C 0.031 3.969 13 N -0.375 5.375 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.003 4.003 23 C -0.174 4.174 24 C -0.025 4.025 25 N -0.386 5.386 26 C 0.335 3.665 27 O -0.386 6.386 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.094 0.906 49 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.937 -13.368 19.955 24.097 hybrid contribution 0.252 0.702 -0.667 1.000 sum 2.189 -12.666 19.288 23.179 Atomic orbital electron populations 1.21937 0.94306 1.02147 1.03860 1.21650 0.97922 0.91123 1.03485 1.21706 0.97587 0.98750 0.94337 1.19589 0.80609 0.84341 0.82771 1.90762 1.41225 1.25875 1.82523 1.47964 1.46638 1.32969 1.05872 1.22239 0.92962 0.88533 0.99410 1.21981 0.97768 1.01358 0.96326 1.21534 0.99407 0.96838 0.97142 1.21737 0.97445 0.97617 0.95658 0.90787 1.20590 0.92390 0.95412 0.88506 1.42327 1.04649 1.70737 1.19743 1.19197 0.92196 1.30056 0.95548 0.91248 1.24721 0.95269 1.01960 0.99015 1.69641 0.99787 1.52140 1.36805 0.86266 0.77228 0.79349 0.83339 1.21272 1.21711 1.21288 1.21782 0.94047 0.97740 0.86764 1.23048 0.91981 0.99910 1.02416 1.22104 0.90709 0.99027 0.90648 1.46066 1.15082 1.54149 1.23285 1.19885 0.82882 0.77862 0.85865 1.90700 1.26880 1.60909 1.60067 0.92702 0.92260 0.90206 0.89760 0.90618 0.88940 0.91019 0.91493 0.90616 0.90164 0.91985 0.96159 0.96192 0.78244 0.93509 0.91200 0.88951 0.87758 0.88374 0.89552 0.90610 0.74804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.39 37.16 0.35 -1.40 16 2 C -0.10 -0.88 4.59 -26.73 -0.12 -1.00 16 3 C -0.12 -1.19 0.29 -155.67 -0.05 -1.24 16 4 C 0.54 7.30 4.91 -10.99 -0.05 7.24 16 5 O -0.53 -9.55 15.52 5.56 0.09 -9.46 16 6 N -0.60 -7.13 2.96 -172.51 -0.51 -7.64 16 7 C 0.09 0.78 4.04 -3.71 -0.01 0.76 16 8 C -0.14 -1.32 5.94 -26.61 -0.16 -1.48 16 9 C -0.11 -1.52 5.05 -26.69 -0.13 -1.66 16 10 C -0.10 -1.63 2.39 -90.27 -0.22 -1.85 16 11 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 12 C 0.16 3.15 5.66 -4.04 -0.02 3.12 16 13 N -0.73 -18.17 5.32 -59.90 -0.32 -18.49 16 14 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 18 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.12 1.65 5.76 -3.49 -0.02 1.63 16 23 C -0.14 -0.88 4.83 -25.10 -0.12 -1.00 16 24 C 0.10 0.66 7.78 -3.12 -0.02 0.64 16 25 N -0.73 -6.68 6.24 -59.20 -0.37 -7.05 16 26 C 0.55 6.94 6.43 -10.86 -0.07 6.87 16 27 O -0.51 -8.31 15.77 5.56 0.09 -8.22 16 28 H 0.05 0.65 7.08 -51.93 -0.37 0.29 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.06 5.99 -51.93 -0.31 0.74 16 31 H 0.08 0.53 5.32 -51.93 -0.28 0.25 16 32 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 33 H 0.09 0.58 3.06 -51.93 -0.16 0.42 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.33 7.15 -51.92 -0.37 0.95 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 45 H 0.10 0.66 5.41 -51.93 -0.28 0.38 16 46 H 0.10 0.38 7.91 -51.93 -0.41 -0.03 16 47 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.41 3.08 8.96 -40.82 -0.37 2.72 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -35.81 370.36 -8.42 -44.23 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.78 Total: 7.60 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.90 Total: 3.32 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.47 Total: -60.40 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.17 Total: -17.68 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.81 -8.42 -44.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690409859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.605 kcal (2) G-P(sol) polarization free energy of solvation -35.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds