Wall clock time and date at job start Tue Mar 31 2020 13:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47373 * 2 1 4 4 C 1.50696 * 110.54101 * 308.68082 * 3 2 1 5 5 O 1.21278 * 120.00170 * 121.08248 * 4 3 2 6 6 N 1.34780 * 119.99945 * 301.08750 * 4 3 2 7 7 C 1.46928 * 120.62786 * 355.08973 * 6 4 3 8 8 C 1.53192 * 108.77745 * 233.58737 * 7 6 4 9 9 C 1.53041 * 109.30869 * 305.36942 * 8 7 6 10 10 C 1.53042 * 109.54178 * 61.36651 * 9 8 7 11 11 H 1.08994 * 109.49569 * 58.58055 * 10 9 8 12 12 C 1.52997 * 109.49920 * 178.65067 * 10 9 8 13 13 N 1.46509 * 109.47031 * 294.99634 * 12 10 9 14 14 C 1.36933 * 119.99830 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00514 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99472 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00543 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47309 * 60.00258 * 18 16 14 20 20 H 1.48504 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47076 * 299.99990 * 18 16 14 22 22 C 1.46922 * 120.63162 * 174.81269 * 6 4 3 23 23 C 1.54630 * 110.48978 * 186.06398 * 3 2 1 24 24 C 1.54480 * 101.76803 * 216.52985 * 23 3 2 25 25 N 1.46766 * 105.47149 * 25.41443 * 24 23 3 26 26 C 1.34419 * 111.30321 * 342.98494 * 25 24 23 27 27 O 1.21277 * 124.94118 * 180.37307 * 26 25 24 28 28 H 1.09002 * 109.46966 * 60.80358 * 1 2 3 29 29 H 1.08995 * 109.47029 * 180.80684 * 1 2 3 30 30 H 1.09002 * 109.47060 * 300.80509 * 1 2 3 31 31 H 1.09001 * 109.47386 * 240.00325 * 2 1 3 32 32 H 1.09006 * 109.47212 * 120.00537 * 2 1 3 33 33 H 1.08993 * 109.58978 * 353.37932 * 7 6 4 34 34 H 1.09007 * 109.58410 * 113.65702 * 7 6 4 35 35 H 1.09000 * 109.49881 * 65.31655 * 8 7 6 36 36 H 1.09001 * 109.50050 * 185.41803 * 8 7 6 37 37 H 1.09010 * 109.45802 * 181.38311 * 9 8 7 38 38 H 1.09002 * 109.46080 * 301.35364 * 9 8 7 39 39 H 1.09001 * 109.47599 * 54.99294 * 12 10 9 40 40 H 1.08999 * 109.47263 * 175.00165 * 12 10 9 41 41 H 0.97005 * 119.99727 * 0.02562 * 13 12 10 42 42 H 0.96996 * 120.00146 * 180.02562 * 17 16 14 43 43 H 1.08990 * 109.58745 * 246.20172 * 22 6 4 44 44 H 1.08997 * 109.58559 * 6.62659 * 22 6 4 45 45 H 1.08999 * 110.96862 * 98.40063 * 23 3 2 46 46 H 1.09005 * 110.96646 * 334.64963 * 23 3 2 47 47 H 1.08997 * 110.24525 * 144.41604 * 24 23 3 48 48 H 1.09000 * 110.24114 * 266.41431 * 24 23 3 49 49 H 0.97000 * 124.34311 * 163.01379 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3848 2.2350 -1.1016 5 8 0.7405 3.2271 -0.8342 6 7 1.5147 1.8413 -2.3840 7 6 2.3786 0.7056 -2.7345 8 6 3.3684 1.1539 -3.8145 9 6 2.5951 1.7437 -4.9962 10 6 1.8023 2.9669 -4.5298 11 1 2.4860 3.7059 -4.1123 12 6 1.0563 3.5756 -5.7188 13 7 2.0241 4.0892 -6.6915 14 6 1.5861 4.6822 -7.8455 15 1 0.5273 4.7717 -8.0384 16 6 2.5031 5.1683 -8.7673 17 7 3.7936 5.0587 -8.5324 18 14 1.9056 5.9779 -10.3411 19 1 1.0740 7.1612 -10.0043 20 1 3.0738 6.4077 -11.1511 21 1 1.0942 5.0079 -11.1195 22 6 0.7905 2.5356 -3.4573 23 6 3.5784 1.4726 -0.1530 24 6 3.9622 2.6613 0.7559 25 7 2.8816 2.7637 1.7437 26 6 1.7879 2.0931 1.3424 27 8 0.7504 2.0198 1.9659 28 1 -0.3633 0.5013 -0.8971 29 1 -0.3633 -1.0275 0.0145 30 1 -0.3633 0.5263 0.8827 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9259 0.3766 -1.8512 34 1 1.7684 -0.1146 -3.1128 35 1 4.0373 1.9101 -3.4037 36 1 3.9510 0.2968 -4.1523 37 1 3.2957 2.0409 -5.7766 38 1 1.9083 0.9949 -5.3908 39 1 0.4384 2.8113 -6.1901 40 1 0.4228 4.3917 -5.3711 41 1 2.9752 4.0084 -6.5184 42 1 4.4343 5.3987 -9.1764 43 1 0.0537 1.8626 -3.8957 44 1 0.2897 3.4143 -3.0511 45 1 3.8639 1.6642 -1.1874 46 1 4.0245 0.5457 0.2077 47 1 4.9113 2.4640 1.2542 48 1 4.0263 3.5784 0.1704 49 1 2.9480 3.2529 2.5787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690409859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:25 Heat of formation + Delta-G solvation = -83.261451 kcal Electronic energy + Delta-G solvation = -29256.209715 eV Core-core repulsion = 25410.204728 eV Total energy + Delta-G solvation = -3846.004986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.68025 -40.48249 -38.72666 -37.58633 -36.69826 -35.59266 -34.07857 -32.94790 -31.75317 -30.98473 -28.57201 -27.25761 -26.65109 -24.73657 -23.99895 -23.35925 -22.95579 -22.29503 -20.90700 -19.71286 -19.19234 -18.49350 -17.93788 -17.54613 -16.76636 -16.61538 -16.12009 -15.84300 -15.60044 -15.48024 -15.38869 -15.21957 -14.86243 -14.69335 -14.57882 -14.41159 -14.11041 -13.84064 -13.82756 -13.60977 -13.42518 -13.10768 -12.85450 -12.75843 -12.69294 -12.46039 -12.22288 -12.16456 -12.05983 -11.89714 -11.83132 -11.68277 -11.49479 -11.34726 -10.91998 -10.88669 -10.62333 -10.12426 -9.68600 -8.99679 -7.95538 -5.23920 1.29389 1.45262 1.47149 1.49882 1.55938 1.99839 2.37831 2.56123 3.03471 3.33745 3.37324 3.38873 3.67272 3.79190 3.82105 3.89894 4.03124 4.06746 4.24939 4.29235 4.33902 4.39540 4.42354 4.47565 4.58736 4.68788 4.70102 4.75890 4.76451 4.80817 4.87367 4.92911 4.96550 4.99958 5.01524 5.10168 5.22922 5.27432 5.37799 5.43754 5.46424 5.50297 5.54814 5.77664 5.96373 6.26746 6.32833 7.01839 7.18653 7.33679 8.08533 8.33558 9.27635 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.002812 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.951747 B = 9955.825393 C =10030.994730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.101 4.101 3 C -0.114 4.114 4 C 0.536 3.464 5 O -0.587 6.587 6 N -0.596 5.596 7 C 0.087 3.913 8 C -0.128 4.128 9 C -0.108 4.108 10 C -0.090 4.090 11 H 0.053 0.947 12 C 0.157 3.843 13 N -0.740 5.740 14 C -0.250 4.250 15 H 0.072 0.928 16 C -0.071 4.071 17 N -0.967 5.967 18 Si 0.972 3.028 19 H -0.282 1.282 20 H -0.293 1.293 21 H -0.277 1.277 22 C 0.127 3.873 23 C -0.130 4.130 24 C 0.093 3.907 25 N -0.723 5.723 26 C 0.535 3.465 27 O -0.562 6.562 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.008 0.992 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.111 0.889 46 H 0.141 0.859 47 H 0.126 0.874 48 H 0.063 0.937 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -16.570 19.932 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.139 4.139 3 C -0.121 4.121 4 C 0.324 3.676 5 O -0.467 6.467 6 N -0.327 5.327 7 C -0.034 4.034 8 C -0.166 4.166 9 C -0.146 4.146 10 C -0.110 4.110 11 H 0.072 0.928 12 C 0.030 3.970 13 N -0.383 5.383 14 C -0.382 4.382 15 H 0.090 0.910 16 C -0.264 4.264 17 N -0.617 5.617 18 Si 0.801 3.199 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.203 1.203 22 C 0.003 3.997 23 C -0.167 4.167 24 C -0.031 4.031 25 N -0.377 5.377 26 C 0.319 3.681 27 O -0.440 6.440 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.026 0.974 41 H 0.209 0.791 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.159 0.841 47 H 0.144 0.856 48 H 0.081 0.919 49 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.628 -16.090 20.169 26.055 hybrid contribution -0.310 1.589 -0.707 1.767 sum 3.317 -14.501 19.462 24.496 Atomic orbital electron populations 1.21901 0.96457 1.02634 1.01242 1.21765 0.96012 0.90112 1.05964 1.21725 1.00109 0.98847 0.91398 1.20253 0.79808 0.83792 0.83725 1.90735 1.43855 1.28674 1.83450 1.48010 1.46475 1.33326 1.04890 1.22584 0.92733 0.87537 1.00497 1.21949 0.97639 1.02259 0.94714 1.21471 0.98962 0.95961 0.98180 1.21529 0.97194 0.98015 0.94240 0.92808 1.20723 0.91944 0.95137 0.89181 1.42484 1.05063 1.70764 1.19990 1.19587 0.92431 1.29636 0.96498 0.91017 1.25522 0.95477 1.03140 1.02262 1.69790 1.00753 1.53388 1.37776 0.85236 0.76650 0.78471 0.79540 1.20792 1.21892 1.20253 1.21514 0.93856 0.97495 0.86796 1.23235 0.88656 1.01757 1.03046 1.22380 0.91401 0.98842 0.90432 1.46189 1.14989 1.52764 1.23792 1.20448 0.82806 0.78181 0.86626 1.90669 1.28829 1.62894 1.61644 0.94658 0.90113 0.93540 0.86562 0.88579 0.85653 0.88888 0.91600 0.87518 0.93346 0.91214 0.95446 0.97438 0.79144 0.93910 0.89702 0.91699 0.87105 0.84131 0.85562 0.91896 0.74224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.39 71.98 0.68 -2.66 16 2 C -0.10 -1.36 4.59 30.59 0.14 -1.22 16 3 C -0.11 -2.09 0.29 -52.93 -0.02 -2.10 16 4 C 0.54 14.23 4.91 87.66 0.43 14.66 16 5 O -0.59 -22.32 15.52 -3.02 -0.05 -22.37 16 6 N -0.60 -13.26 2.96 -818.09 -2.42 -15.68 16 7 C 0.09 1.13 4.04 86.36 0.35 1.48 16 8 C -0.13 -2.03 5.94 30.67 0.18 -1.85 16 9 C -0.11 -2.82 5.05 30.62 0.15 -2.66 16 10 C -0.09 -2.83 2.39 -10.57 -0.03 -2.86 16 11 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 12 C 0.16 6.37 5.66 86.38 0.49 6.86 16 13 N -0.74 -37.72 5.32 -343.44 -1.83 -39.55 16 14 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 16 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 17 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 18 Si 0.97 46.23 29.55 68.60 2.03 48.25 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.13 3.53 5.76 86.51 0.50 4.02 16 23 C -0.13 -1.12 4.83 31.65 0.15 -0.97 16 24 C 0.09 0.95 7.78 86.83 0.68 1.63 16 25 N -0.72 -12.36 6.24 -459.80 -2.87 -15.23 16 26 C 0.53 13.26 6.43 87.90 0.56 13.83 16 27 O -0.56 -19.03 15.77 -3.02 -0.05 -19.08 16 28 H 0.03 0.82 7.08 -2.39 -0.02 0.81 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.27 5.99 -2.39 -0.01 1.25 16 31 H 0.12 0.80 5.32 -2.39 -0.01 0.79 16 32 H 0.10 0.98 8.11 -2.38 -0.02 0.96 16 33 H 0.13 0.84 3.06 -2.39 -0.01 0.83 16 34 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.59 7.15 -2.38 -0.02 1.57 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.38 20.07 6.85 -92.70 -0.63 19.43 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 2.18 7.00 -2.39 -0.02 2.17 16 45 H 0.11 0.88 5.41 -2.39 -0.01 0.86 16 46 H 0.14 0.12 7.91 -2.38 -0.02 0.10 16 47 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.42 5.97 8.96 -92.71 -0.83 5.14 16 Total: -1.00 -84.00 370.36 0.19 -83.81 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.49 Total: 26.93 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.58 Total: 11.24 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -6.83 Total: -128.78 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.09 Total: -41.45 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -84.00 0.19 -83.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690409859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.550 kcal (2) G-P(sol) polarization free energy of solvation -84.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds