Wall clock time and date at job start Tue Mar 31 2020 13:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99830 * 2 1 4 4 C 1.52997 * 109.47044 * 232.76441 * 3 2 1 5 5 C 1.53002 * 109.47095 * 112.76696 * 3 2 1 6 6 C 1.52998 * 109.47089 * 60.00230 * 5 3 2 7 7 C 1.50701 * 109.47348 * 352.76811 * 3 2 1 8 8 O 1.21281 * 120.00383 * 113.97778 * 7 3 2 9 9 N 1.34779 * 119.99832 * 293.97626 * 7 3 2 10 10 C 1.46500 * 119.99667 * 5.21856 * 9 7 3 11 11 C 1.46491 * 120.00022 * 185.21457 * 9 7 3 12 12 C 1.53515 * 114.17341 * 120.00178 * 11 9 7 13 13 N 1.47486 * 87.92862 * 87.81097 * 12 11 9 14 14 C 1.46908 * 110.99549 * 138.70787 * 13 12 11 15 15 C 1.50696 * 109.46750 * 170.00136 * 14 13 12 16 16 O 1.21293 * 120.00479 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99602 * 179.72617 * 15 14 13 18 18 C 1.37100 * 119.99712 * 180.02562 * 17 15 14 19 19 H 1.07991 * 120.00426 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99782 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46928 * 59.99650 * 22 20 18 24 24 H 1.48501 * 109.47224 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46838 * 299.99791 * 22 20 18 26 26 C 1.47479 * 87.83713 * 27.01707 * 13 12 11 27 27 H 1.07995 * 119.99784 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99727 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00234 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47154 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47661 * 299.99865 * 4 3 2 32 32 H 1.09002 * 109.46985 * 60.00516 * 4 3 2 33 33 H 1.09001 * 109.46997 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.47078 * 299.99604 * 5 3 2 35 35 H 1.09002 * 109.47356 * 180.02562 * 6 5 3 36 36 H 1.09001 * 109.46952 * 299.99722 * 6 5 3 37 37 H 1.08996 * 109.47672 * 59.99738 * 6 5 3 38 38 H 1.09002 * 109.46976 * 266.62321 * 10 9 7 39 39 H 1.08999 * 109.47649 * 26.62703 * 10 9 7 40 40 H 1.09007 * 109.47095 * 146.63046 * 10 9 7 41 41 H 1.09002 * 113.25889 * 347.05261 * 11 9 7 42 42 H 1.09003 * 113.46979 * 333.04945 * 12 11 9 43 43 H 1.08997 * 113.53435 * 202.58872 * 12 11 9 44 44 H 1.09003 * 109.46741 * 49.99876 * 14 13 12 45 45 H 1.09000 * 109.46971 * 290.00087 * 14 13 12 46 46 H 0.96996 * 120.00185 * 359.97438 * 17 15 14 47 47 H 0.96996 * 120.00012 * 180.02562 * 21 20 18 48 48 H 1.08995 * 113.47814 * 87.75070 * 26 13 12 49 49 H 1.08997 * 113.47317 * 218.22416 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0744 1.3103 -1.1484 5 6 2.8019 1.4677 1.3301 6 6 3.7863 0.3105 1.5117 7 6 1.0940 2.4449 -0.1789 8 8 0.9226 3.2419 0.7191 9 7 0.4173 2.5786 -1.3368 10 6 0.5369 1.5544 -2.3775 11 6 -0.4378 3.7479 -1.5546 12 6 -0.0350 4.6049 -2.7629 13 7 -0.8865 3.7353 -3.5959 14 6 -1.6472 4.5245 -4.5740 15 6 -2.3106 3.5978 -5.5600 16 8 -2.1638 2.3981 -5.4583 17 7 -3.0712 4.1020 -6.5520 18 6 -3.6752 3.2589 -7.4487 19 1 -3.5412 2.1910 -7.3605 20 6 -4.4588 3.7787 -8.4716 21 7 -4.6214 5.0783 -8.5793 22 14 -5.2812 2.6302 -9.6939 23 1 -6.1976 1.7120 -8.9710 24 1 -6.0556 3.4275 -10.6787 25 1 -4.2447 1.8379 -10.4032 26 6 -1.6938 3.4664 -2.3913 27 1 -0.5399 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 3.6190 2.2545 -1.1487 31 1 3.7756 0.4860 -1.0191 32 1 2.5483 1.1946 -2.0961 33 1 3.3473 2.4114 1.3299 34 1 2.0818 1.4639 2.1483 35 1 4.3121 0.4261 2.4595 36 1 3.2413 -0.6334 1.5117 37 1 4.5064 0.3143 0.6935 38 1 1.3236 1.8374 -3.0769 39 1 0.7856 0.5974 -1.9187 40 1 -0.4094 1.4665 -2.9112 41 1 -0.6260 4.3189 -0.6454 42 1 1.0250 4.5384 -3.0082 43 1 -0.3904 5.6337 -2.7046 44 1 -0.9711 5.1955 -5.1040 45 1 -2.4077 5.1092 -4.0565 46 1 -3.1918 5.0612 -6.6310 47 1 -5.1688 5.4411 -9.2931 48 1 -2.4924 4.1911 -2.2331 49 1 -2.0396 2.4351 -2.3218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754580476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:55 Heat of formation + Delta-G solvation = 10.227152 kcal Electronic energy + Delta-G solvation = -28443.290522 eV Core-core repulsion = 24601.339506 eV Total energy + Delta-G solvation = -3841.951016 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.31363 -39.78250 -37.78417 -36.66803 -34.94376 -33.87349 -32.30360 -31.26865 -30.29562 -29.27321 -27.18602 -25.94775 -25.80981 -24.98655 -23.62589 -22.06582 -21.74121 -19.32267 -19.14208 -18.27443 -17.88910 -17.00222 -16.40352 -16.12478 -15.98978 -15.31652 -15.12055 -15.03280 -14.67908 -14.49311 -13.98939 -13.83678 -13.64744 -13.29225 -13.27193 -12.95997 -12.77318 -12.59148 -12.49234 -12.27556 -12.09463 -11.85973 -11.74010 -11.59943 -11.49189 -11.28835 -11.08600 -10.98846 -10.92523 -10.72974 -10.69550 -10.44922 -10.21298 -9.75286 -9.49199 -9.36909 -8.80791 -8.58932 -8.20598 -7.96214 -6.41674 -3.82511 1.99410 2.49877 2.86376 3.19402 3.25069 3.29263 3.90367 3.99397 4.22002 4.24733 4.42080 4.50401 4.67509 4.80641 4.85807 4.99456 5.02762 5.11161 5.18928 5.26588 5.30080 5.35500 5.38111 5.43536 5.49508 5.59042 5.63417 5.65043 5.68354 5.72201 5.74386 5.75768 5.82762 5.85409 5.95580 5.96549 6.11434 6.23006 6.27703 6.32369 6.42130 6.49168 6.57991 7.11473 7.39239 7.54619 8.05707 8.08626 8.62036 9.18232 9.54795 10.06945 10.76135 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026964 B = 0.002484 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.175488 B =11269.565210 C =11777.549864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C -0.047 4.047 4 C -0.159 4.159 5 C -0.094 4.094 6 C -0.154 4.154 7 C 0.528 3.472 8 O -0.545 6.545 9 N -0.583 5.583 10 C 0.062 3.938 11 C 0.113 3.887 12 C -0.017 4.017 13 N -0.435 5.435 14 C 0.007 3.993 15 C 0.448 3.552 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.005 4.005 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.079 0.921 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.515 -4.745 16.994 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C -0.051 4.051 4 C -0.216 4.216 5 C -0.132 4.132 6 C -0.211 4.211 7 C 0.316 3.684 8 O -0.422 6.422 9 N -0.314 5.314 10 C -0.080 4.080 11 C 0.008 3.992 12 C -0.148 4.148 13 N -0.157 5.157 14 C -0.125 4.125 15 C 0.233 3.767 16 O -0.460 6.460 17 N -0.204 5.204 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.135 4.135 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.685 -5.569 16.941 22.479 hybrid contribution -1.044 0.940 -0.651 1.548 sum 12.641 -4.629 16.290 21.133 Atomic orbital electron populations 1.24149 0.96075 1.02840 0.98780 1.22642 0.95635 0.96900 1.01408 1.19945 0.95003 0.91751 0.98353 1.22259 0.98518 1.02804 0.98001 1.21315 0.97965 0.99093 0.94827 1.21883 0.99127 0.98428 1.01664 1.20488 0.80450 0.86053 0.81406 1.90668 1.65713 1.45000 1.40843 1.47395 1.45007 1.22341 1.16620 1.22447 1.04622 0.90405 0.90501 1.22047 0.91360 0.87737 0.98060 1.24337 1.00747 0.96572 0.93117 1.68870 1.12252 1.29317 1.05293 1.22517 0.97808 0.95956 0.96223 1.19647 0.83859 0.89089 0.84147 1.90505 1.64833 1.15367 1.75253 1.41875 1.43381 1.09653 1.25515 1.19629 1.25389 0.92007 1.05741 0.88037 1.25255 0.97849 0.96338 0.98558 1.69603 1.40142 1.10904 1.33814 0.85925 0.79173 0.79483 0.79678 1.19942 1.20998 1.19906 1.24272 0.95350 1.03828 0.90049 0.88067 0.87610 0.85980 0.92098 0.91109 0.90068 0.91322 0.91180 0.92617 0.92446 0.92292 0.92283 0.90029 0.88804 0.87074 0.89596 0.90528 0.89442 0.92202 0.77574 0.91856 0.90314 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 11.88 29.01 0.34 -1.40 16 2 C -0.15 -1.29 6.30 -36.03 -0.23 -1.51 16 3 C -0.05 -0.46 0.51 -156.81 -0.08 -0.54 16 4 C -0.16 -1.33 7.79 37.16 0.29 -1.04 16 5 C -0.09 -0.88 4.29 -26.73 -0.11 -0.99 16 6 C -0.15 -1.06 9.31 37.16 0.35 -0.71 16 7 C 0.53 6.69 4.88 -10.98 -0.05 6.64 16 8 O -0.54 -8.56 15.49 5.56 0.09 -8.47 16 9 N -0.58 -7.15 2.46 -173.61 -0.43 -7.58 16 10 C 0.06 0.74 6.95 59.85 0.42 1.16 16 11 C 0.11 1.43 4.68 -67.72 -0.32 1.11 16 12 C -0.02 -0.22 7.31 -7.53 -0.06 -0.27 16 13 N -0.44 -6.79 4.48 -246.07 -1.10 -7.89 16 14 C 0.01 0.12 5.30 -4.97 -0.03 0.09 16 15 C 0.45 10.41 7.85 -10.99 -0.09 10.32 16 16 O -0.58 -15.34 16.01 5.55 0.09 -15.25 16 17 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 22 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.01 -0.07 6.74 -7.53 -0.05 -0.12 16 27 H 0.10 1.18 5.75 -52.49 -0.30 0.88 16 28 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.12 0.84 7.30 -52.49 -0.38 0.45 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 32 H 0.08 0.71 4.19 -51.93 -0.22 0.49 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.36 6.77 -51.93 -0.35 0.01 16 37 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 38 H 0.06 0.71 6.94 -51.93 -0.36 0.35 16 39 H 0.08 0.84 3.47 -51.93 -0.18 0.66 16 40 H 0.09 1.37 5.83 -51.92 -0.30 1.07 16 41 H 0.11 1.41 7.26 -51.93 -0.38 1.04 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 44 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 45 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 46 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.08 1.01 7.42 -51.93 -0.39 0.63 16 49 H 0.09 1.39 7.22 -51.93 -0.37 1.02 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -32.13 376.93 -7.36 -39.49 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -7.48 Total: 11.39 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 0.15 Total: 4.79 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.86 Total: -53.60 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.72 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.13 -7.36 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754580476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.715 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds