Wall clock time and date at job start Tue Mar 31 2020 13:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99830 * 2 1 4 4 C 1.52997 * 109.47044 * 232.76441 * 3 2 1 5 5 C 1.53002 * 109.47095 * 112.76696 * 3 2 1 6 6 C 1.52998 * 109.47089 * 60.00230 * 5 3 2 7 7 C 1.50701 * 109.47348 * 352.76811 * 3 2 1 8 8 O 1.21281 * 120.00383 * 113.97778 * 7 3 2 9 9 N 1.34779 * 119.99832 * 293.97626 * 7 3 2 10 10 C 1.46500 * 119.99667 * 5.21856 * 9 7 3 11 11 C 1.46491 * 120.00022 * 185.21457 * 9 7 3 12 12 C 1.53515 * 114.17341 * 120.00178 * 11 9 7 13 13 N 1.47486 * 87.92862 * 87.81097 * 12 11 9 14 14 C 1.46908 * 110.99549 * 138.70787 * 13 12 11 15 15 C 1.50696 * 109.46750 * 170.00136 * 14 13 12 16 16 O 1.21293 * 120.00479 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99602 * 179.72617 * 15 14 13 18 18 C 1.37100 * 119.99712 * 180.02562 * 17 15 14 19 19 H 1.07991 * 120.00426 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99782 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00036 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46928 * 59.99650 * 22 20 18 24 24 H 1.48501 * 109.47224 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46838 * 299.99791 * 22 20 18 26 26 C 1.47479 * 87.83713 * 27.01707 * 13 12 11 27 27 H 1.07995 * 119.99784 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99727 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.00234 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47154 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47661 * 299.99865 * 4 3 2 32 32 H 1.09002 * 109.46985 * 60.00516 * 4 3 2 33 33 H 1.09001 * 109.46997 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.47078 * 299.99604 * 5 3 2 35 35 H 1.09002 * 109.47356 * 180.02562 * 6 5 3 36 36 H 1.09001 * 109.46952 * 299.99722 * 6 5 3 37 37 H 1.08996 * 109.47672 * 59.99738 * 6 5 3 38 38 H 1.09002 * 109.46976 * 266.62321 * 10 9 7 39 39 H 1.08999 * 109.47649 * 26.62703 * 10 9 7 40 40 H 1.09007 * 109.47095 * 146.63046 * 10 9 7 41 41 H 1.09002 * 113.25889 * 347.05261 * 11 9 7 42 42 H 1.09003 * 113.46979 * 333.04945 * 12 11 9 43 43 H 1.08997 * 113.53435 * 202.58872 * 12 11 9 44 44 H 1.09003 * 109.46741 * 49.99876 * 14 13 12 45 45 H 1.09000 * 109.46971 * 290.00087 * 14 13 12 46 46 H 0.96996 * 120.00185 * 359.97438 * 17 15 14 47 47 H 0.96996 * 120.00012 * 180.02562 * 21 20 18 48 48 H 1.08995 * 113.47814 * 87.75070 * 26 13 12 49 49 H 1.08997 * 113.47317 * 218.22416 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0744 1.3103 -1.1484 5 6 2.8019 1.4677 1.3301 6 6 3.7863 0.3105 1.5117 7 6 1.0940 2.4449 -0.1789 8 8 0.9226 3.2419 0.7191 9 7 0.4173 2.5786 -1.3368 10 6 0.5369 1.5544 -2.3775 11 6 -0.4378 3.7479 -1.5546 12 6 -0.0350 4.6049 -2.7629 13 7 -0.8865 3.7353 -3.5959 14 6 -1.6472 4.5245 -4.5740 15 6 -2.3106 3.5978 -5.5600 16 8 -2.1638 2.3981 -5.4583 17 7 -3.0712 4.1020 -6.5520 18 6 -3.6752 3.2589 -7.4487 19 1 -3.5412 2.1910 -7.3605 20 6 -4.4588 3.7787 -8.4716 21 7 -4.6214 5.0783 -8.5793 22 14 -5.2812 2.6302 -9.6939 23 1 -6.1976 1.7120 -8.9710 24 1 -6.0556 3.4275 -10.6787 25 1 -4.2447 1.8379 -10.4032 26 6 -1.6938 3.4664 -2.3913 27 1 -0.5399 0.9353 0.0004 28 1 -0.5399 -0.9353 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 3.6190 2.2545 -1.1487 31 1 3.7756 0.4860 -1.0191 32 1 2.5483 1.1946 -2.0961 33 1 3.3473 2.4114 1.3299 34 1 2.0818 1.4639 2.1483 35 1 4.3121 0.4261 2.4595 36 1 3.2413 -0.6334 1.5117 37 1 4.5064 0.3143 0.6935 38 1 1.3236 1.8374 -3.0769 39 1 0.7856 0.5974 -1.9187 40 1 -0.4094 1.4665 -2.9112 41 1 -0.6260 4.3189 -0.6454 42 1 1.0250 4.5384 -3.0082 43 1 -0.3904 5.6337 -2.7046 44 1 -0.9711 5.1955 -5.1040 45 1 -2.4077 5.1092 -4.0565 46 1 -3.1918 5.0612 -6.6310 47 1 -5.1688 5.4411 -9.2931 48 1 -2.4924 4.1911 -2.2331 49 1 -2.0396 2.4351 -2.3218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754580476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:54 Heat of formation + Delta-G solvation = -11.838618 kcal Electronic energy + Delta-G solvation = -28444.247366 eV Core-core repulsion = 24601.339506 eV Total energy + Delta-G solvation = -3842.907860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.33334 -40.92433 -39.57398 -37.59851 -36.08743 -35.77785 -33.28845 -33.02684 -31.47943 -30.13418 -28.23078 -27.39129 -26.93883 -26.08845 -24.98558 -22.88834 -22.63556 -21.08329 -20.13249 -19.91131 -19.19995 -18.05324 -17.74467 -17.38683 -16.96132 -16.66975 -16.43552 -16.32972 -16.00661 -15.54532 -15.44971 -14.96753 -14.82737 -14.55742 -14.37543 -14.12088 -13.71451 -13.60217 -13.52026 -13.40880 -13.33549 -13.01374 -12.98635 -12.67313 -12.66555 -12.43300 -12.42554 -12.18624 -12.12498 -12.04646 -11.92349 -11.71056 -11.47620 -11.39776 -10.74249 -10.36832 -10.14198 -9.99539 -9.73643 -9.61866 -8.45529 -5.93959 1.25991 1.39802 1.41331 1.50615 1.52151 1.89418 2.08161 2.28887 2.80856 3.20683 3.33713 3.37121 3.49299 3.71137 3.75708 3.95228 4.06272 4.14439 4.25765 4.33112 4.33877 4.41228 4.42255 4.48242 4.52625 4.59327 4.63432 4.66002 4.72681 4.79629 4.81433 4.83119 4.99902 5.02910 5.08829 5.17993 5.21682 5.29656 5.35395 5.41435 5.51338 5.55457 5.58146 5.70962 5.85289 6.06597 6.39645 6.62129 7.08142 7.14461 7.58703 8.14825 8.71740 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026964 B = 0.002484 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.175488 B =11269.565210 C =11777.549864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 C -0.047 4.047 4 C -0.156 4.156 5 C -0.092 4.092 6 C -0.149 4.149 7 C 0.524 3.476 8 O -0.580 6.580 9 N -0.582 5.582 10 C 0.073 3.927 11 C 0.117 3.883 12 C -0.006 4.006 13 N -0.458 5.458 14 C 0.020 3.980 15 C 0.445 3.555 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.331 4.331 19 H 0.078 0.922 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.005 4.005 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.152 0.848 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.092 0.908 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.661 -5.172 17.147 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.155 4.155 3 C -0.050 4.050 4 C -0.212 4.212 5 C -0.130 4.130 6 C -0.206 4.206 7 C 0.314 3.686 8 O -0.460 6.460 9 N -0.312 5.312 10 C -0.069 4.069 11 C 0.012 3.988 12 C -0.136 4.136 13 N -0.180 5.180 14 C -0.112 4.112 15 C 0.232 3.768 16 O -0.500 6.500 17 N -0.216 5.216 18 C -0.460 4.460 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.134 4.134 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.169 0.831 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.110 0.890 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.839 -5.978 17.095 23.413 hybrid contribution -1.380 1.082 -0.629 1.863 sum 13.459 -4.896 16.466 21.824 Atomic orbital electron populations 1.24145 0.96588 1.02430 1.00145 1.22840 0.95313 0.97353 1.00041 1.20026 0.94737 0.90986 0.99282 1.22253 0.98391 1.03657 0.96930 1.21284 0.97955 0.99865 0.93860 1.21861 0.98717 0.97486 1.02505 1.21084 0.80430 0.86384 0.80699 1.90644 1.66973 1.46528 1.41834 1.47452 1.44748 1.22266 1.16690 1.22360 1.03025 0.91201 0.90283 1.21991 0.90817 0.87985 0.98035 1.24354 1.00358 0.97268 0.91577 1.68847 1.12932 1.30370 1.05893 1.22402 0.98548 0.94791 0.95460 1.20726 0.82545 0.89516 0.84001 1.90477 1.65797 1.17558 1.76137 1.41957 1.44076 1.09553 1.25992 1.19596 1.27323 0.91511 1.07588 0.90380 1.26025 0.97819 0.97912 0.99661 1.69666 1.40331 1.11961 1.34360 0.85009 0.78192 0.77732 0.77541 1.19738 1.19596 1.19689 1.24289 0.96190 1.03124 0.89823 0.90575 0.86118 0.83087 0.92488 0.88678 0.90491 0.92414 0.92986 0.92042 0.91510 0.91099 0.92175 0.88278 0.91591 0.86987 0.89337 0.88150 0.87489 0.89840 0.77125 0.91387 0.88963 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.64 11.88 67.78 0.80 -2.84 16 2 C -0.14 -2.15 6.30 25.64 0.16 -1.99 16 3 C -0.05 -0.86 0.51 -53.68 -0.03 -0.89 16 4 C -0.16 -2.28 7.79 71.98 0.56 -1.72 16 5 C -0.09 -1.61 4.29 30.59 0.13 -1.48 16 6 C -0.15 -1.66 9.31 71.98 0.67 -0.99 16 7 C 0.52 13.21 4.88 87.66 0.43 13.64 16 8 O -0.58 -18.46 15.49 -3.03 -0.05 -18.51 16 9 N -0.58 -14.21 2.46 -821.58 -2.02 -16.23 16 10 C 0.07 1.73 6.95 127.77 0.89 2.62 16 11 C 0.12 2.90 4.68 45.45 0.21 3.11 16 12 C -0.01 -0.14 7.31 83.58 0.61 0.48 16 13 N -0.46 -13.95 4.48 -932.42 -4.18 -18.13 16 14 C 0.02 0.65 5.30 85.55 0.45 1.11 16 15 C 0.44 20.88 7.85 87.66 0.69 21.57 16 16 O -0.61 -33.54 16.01 -3.07 -0.05 -33.59 16 17 N -0.58 -29.48 5.29 -306.98 -1.62 -31.10 16 18 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 19 H 0.08 4.70 7.16 -2.92 -0.02 4.68 16 20 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 21 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 22 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.00 -0.13 6.74 83.58 0.56 0.44 16 27 H 0.08 1.82 5.75 -2.91 -0.02 1.80 16 28 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.15 1.53 7.30 -2.91 -0.02 1.51 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.95 6.43 -2.39 -0.02 0.93 16 32 H 0.08 1.21 4.19 -2.39 -0.01 1.20 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.09 8.03 -2.39 -0.02 1.07 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.64 6.77 -2.39 -0.02 0.62 16 37 H 0.07 0.64 6.43 -2.39 -0.02 0.62 16 38 H 0.06 1.41 6.94 -2.39 -0.02 1.39 16 39 H 0.10 1.96 3.47 -2.39 -0.01 1.95 16 40 H 0.07 1.98 5.83 -2.38 -0.01 1.97 16 41 H 0.11 2.81 7.26 -2.39 -0.02 2.79 16 42 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.10 1.90 7.91 -2.39 -0.02 1.88 16 44 H 0.11 3.15 8.08 -2.39 -0.02 3.13 16 45 H 0.08 2.39 7.30 -2.39 -0.02 2.37 16 46 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 47 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 48 H 0.09 2.28 7.42 -2.39 -0.02 2.26 16 49 H 0.07 2.29 7.22 -2.39 -0.02 2.27 16 Total: -1.00 -70.93 376.93 2.05 -68.88 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.24 Total: 38.43 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 7.43 Total: 14.83 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -7.54 Total: -114.96 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -0.10 Total: -52.10 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -70.93 2.05 -68.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754580476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.038 kcal (2) G-P(sol) polarization free energy of solvation -70.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds