Wall clock time and date at job start Tue Mar 31 2020 14:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00382 * 2 1 4 4 N 1.46897 * 109.47173 * 124.62889 * 3 2 1 5 5 C 1.46902 * 110.99625 * 199.67157 * 4 3 2 6 6 C 1.50703 * 109.47600 * 66.04366 * 5 4 3 7 7 H 1.07998 * 119.99399 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00118 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99768 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47348 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46936 * 120.00301 * 10 8 6 13 13 H 1.48503 * 109.47102 * 240.00253 * 10 8 6 14 14 C 1.46896 * 111.00310 * 75.71530 * 4 3 2 15 15 C 1.50695 * 109.47083 * 199.97318 * 14 4 3 16 16 O 1.21238 * 119.99946 * 355.78967 * 15 14 4 17 17 N 1.34781 * 120.00178 * 175.78807 * 15 14 4 18 18 C 1.34775 * 119.99877 * 179.97438 * 17 15 14 19 19 O 1.21531 * 120.00287 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99491 * 180.02562 * 18 17 15 21 21 C 1.46497 * 119.99884 * 180.02562 * 20 18 17 22 22 C 1.53008 * 109.46991 * 274.99811 * 21 20 18 23 23 C 1.53005 * 109.47004 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.46961 * 60.00405 * 23 22 21 25 25 C 1.53001 * 109.47349 * 299.99500 * 24 23 22 26 26 C 1.52998 * 109.47408 * 155.00153 * 21 20 18 27 27 H 1.08006 * 119.99989 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00460 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99594 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46997 * 4.62279 * 3 2 1 31 31 H 1.08998 * 109.46860 * 244.62926 * 3 2 1 32 32 H 1.08999 * 109.47173 * 186.04783 * 5 4 3 33 33 H 1.09006 * 109.46964 * 306.04072 * 5 4 3 34 34 H 0.96998 * 120.00161 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46966 * 79.97238 * 14 4 3 36 36 H 1.08998 * 109.47055 * 319.97488 * 14 4 3 37 37 H 0.97000 * 119.99811 * 359.97438 * 17 15 14 38 38 H 0.97000 * 120.00197 * 0.02562 * 20 18 17 39 39 H 1.08998 * 109.47671 * 34.99458 * 21 20 18 40 40 H 1.08994 * 109.47333 * 300.00151 * 22 21 20 41 41 H 1.09001 * 109.46574 * 60.00056 * 22 21 20 42 42 H 1.08994 * 109.47264 * 299.99725 * 23 22 21 43 43 H 1.08999 * 109.46575 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46835 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47687 * 59.99579 * 24 23 22 46 46 H 1.09003 * 109.46880 * 300.00837 * 25 24 23 47 47 H 1.08993 * 109.47581 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.46877 * 299.99943 * 26 21 20 49 49 H 1.09004 * 109.47156 * 59.99966 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9900 1.3356 1.1396 5 6 3.3899 2.7132 1.4561 6 6 2.1918 3.4840 1.9473 7 1 1.2293 2.9991 2.0170 8 6 2.3243 4.8082 2.3077 9 7 3.4963 5.3988 2.2223 10 14 0.8389 5.7638 2.9159 11 1 -0.3530 4.8781 2.9170 12 1 1.0950 6.2519 4.2949 13 1 0.5938 6.9215 2.0186 14 6 4.1650 0.4914 0.8857 15 6 4.8288 0.1477 2.1942 16 8 4.4146 0.6264 3.2282 17 7 5.8831 -0.6917 2.2150 18 6 6.4771 -0.9986 3.3852 19 8 6.0619 -0.5188 4.4217 20 7 7.5316 -1.8377 3.4059 21 6 8.1770 -2.1717 4.6779 22 6 9.2113 -1.0981 5.0225 23 6 9.8849 -1.4466 6.3513 24 6 10.5801 -2.8041 6.2300 25 6 9.5459 -3.8778 5.8855 26 6 8.8723 -3.5291 4.5561 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3581 2.1320 0.0828 31 1 2.6265 1.3995 -0.9285 32 1 4.1563 2.7001 2.2311 33 1 3.7872 3.1910 0.5605 34 1 3.5895 6.3305 2.4755 35 1 4.8690 1.0299 0.2515 36 1 3.8526 -0.4251 0.3851 37 1 6.2143 -1.0750 1.3878 38 1 7.8633 -2.2204 2.5786 39 1 7.4252 -2.2180 5.4658 40 1 9.9631 -1.0517 4.2347 41 1 8.7159 -0.1310 5.1093 42 1 9.1328 -1.4926 7.1389 43 1 10.6213 -0.6815 6.5969 44 1 11.0603 -3.0522 7.1766 45 1 11.3321 -2.7582 5.4425 46 1 8.7937 -3.9237 6.6731 47 1 10.0410 -4.8450 5.7995 48 1 8.1355 -4.2940 4.3106 49 1 9.6243 -3.4828 3.7683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292088031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:59 Heat of formation + Delta-G solvation = -47.655932 kcal Electronic energy + Delta-G solvation = -27606.965859 eV Core-core repulsion = 23762.504844 eV Total energy + Delta-G solvation = -3844.461015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91571 -39.17117 -37.81166 -36.42982 -34.40820 -33.92567 -33.10891 -32.19102 -31.04779 -29.60595 -28.25453 -26.66771 -24.32532 -23.21080 -22.90344 -21.64306 -20.66887 -20.34416 -20.02096 -19.22491 -18.46103 -17.03447 -16.42223 -16.04770 -15.78755 -15.22667 -14.96180 -14.68280 -14.64055 -14.47291 -14.15576 -14.06523 -13.90426 -13.48891 -13.29990 -13.10750 -12.71182 -12.47700 -12.28461 -12.10810 -11.77674 -11.55088 -11.45499 -11.40364 -11.11598 -10.96434 -10.75058 -10.72826 -10.59057 -10.58444 -10.47145 -10.23083 -9.86545 -9.72289 -9.25746 -9.13146 -9.03584 -8.87898 -8.34429 -7.30061 -5.93430 -3.92910 2.44885 2.55373 2.73194 3.38306 3.45939 3.50941 3.57901 3.93136 4.37697 4.45538 4.51254 4.64149 4.85001 4.93767 4.96471 5.09700 5.14349 5.19916 5.20612 5.32643 5.36486 5.43468 5.46883 5.51648 5.65601 5.67618 5.70067 5.75787 5.78955 5.81842 5.95616 6.04349 6.07790 6.14390 6.25304 6.32312 6.42841 6.50912 6.72547 7.01149 7.23979 7.28942 7.29432 7.66811 7.85838 8.13775 8.19633 8.50837 8.55110 8.63582 9.13007 9.69781 11.18127 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.002716 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.951177 B =10305.376692 C =11711.944120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C 0.084 3.916 4 N -0.517 5.517 5 C 0.192 3.808 6 C -0.500 4.500 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.041 3.959 15 C 0.506 3.494 16 O -0.423 6.423 17 N -0.698 5.698 18 C 0.693 3.307 19 O -0.527 6.527 20 N -0.741 5.741 21 C 0.162 3.838 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.125 4.125 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.032 0.968 32 H 0.043 0.957 33 H -0.011 1.011 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.403 0.597 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.711 -20.833 -2.412 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.154 4.154 3 C -0.043 4.043 4 N -0.241 5.241 5 C 0.068 3.932 6 C -0.538 4.538 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.212 1.212 14 C -0.092 4.092 15 C 0.290 3.710 16 O -0.286 6.286 17 N -0.365 5.365 18 C 0.393 3.607 19 O -0.398 6.398 20 N -0.398 5.398 21 C 0.057 3.943 22 C -0.171 4.171 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.154 4.154 26 C -0.163 4.163 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.830 -20.020 -0.314 23.780 hybrid contribution 0.225 0.450 -1.258 1.355 sum 13.055 -19.569 -1.571 23.577 Atomic orbital electron populations 1.23714 0.95980 1.01320 1.02423 1.22958 0.95992 0.98262 0.98205 1.21228 0.96021 0.95932 0.91117 1.61844 1.11598 1.14425 1.36282 1.19869 0.97571 0.80371 0.95388 1.21121 0.95281 0.94643 1.42794 0.91789 1.24965 0.96014 0.97750 0.95902 1.69966 1.22861 1.12026 1.49032 0.86454 0.82934 0.79649 0.78466 1.19643 1.21014 1.21232 1.21908 0.95001 0.99906 0.92362 1.21136 0.78832 0.78034 0.93010 1.90893 1.58466 1.45228 1.33987 1.44386 1.33772 1.48548 1.09817 1.16213 0.80184 0.80087 0.84259 1.91085 1.64365 1.53534 1.30850 1.45363 1.33362 1.50552 1.10500 1.20869 0.94426 0.93552 0.85472 1.21963 0.97998 0.99654 0.97483 1.21499 0.99757 0.96855 0.97480 1.21575 0.97865 0.94931 1.01504 1.21489 0.98478 0.98571 0.96847 1.21813 0.99805 0.96046 0.98627 0.88470 0.89252 0.88515 0.88430 0.95020 0.93940 0.99305 0.93092 0.92027 0.89000 0.76351 0.77225 0.89251 0.91903 0.91022 0.91589 0.91691 0.91907 0.91972 0.91541 0.91568 0.91283 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 14.32 29.02 0.42 -2.50 16 2 C -0.14 -2.13 9.33 -36.02 -0.34 -2.47 16 3 C 0.08 1.58 5.24 -4.98 -0.03 1.55 16 4 N -0.52 -11.26 4.00 -238.97 -0.96 -12.22 16 5 C 0.19 5.19 4.33 -4.97 -0.02 5.17 16 6 C -0.50 -14.66 8.23 -34.44 -0.28 -14.94 16 7 H 0.06 1.87 7.31 -52.49 -0.38 1.49 16 8 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 10 Si 0.90 22.71 29.54 -169.99 -5.02 17.69 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.04 0.68 5.30 -4.98 -0.03 0.65 16 15 C 0.51 9.52 7.50 -10.99 -0.08 9.43 16 16 O -0.42 -10.81 13.46 -18.21 -0.25 -11.06 16 17 N -0.70 -9.43 5.24 -15.78 -0.08 -9.51 16 18 C 0.69 10.64 8.47 -86.92 -0.74 9.90 16 19 O -0.53 -11.33 14.41 -18.47 -0.27 -11.59 16 20 N -0.74 -7.43 5.08 -58.69 -0.30 -7.72 16 21 C 0.16 1.58 2.45 -67.93 -0.17 1.42 16 22 C -0.13 -1.33 5.49 -26.72 -0.15 -1.47 16 23 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 24 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 25 C -0.12 -0.72 5.93 -26.70 -0.16 -0.88 16 26 C -0.12 -0.82 5.39 -26.70 -0.14 -0.96 16 27 H 0.10 1.48 7.84 -52.48 -0.41 1.07 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.10 1.32 7.28 -52.49 -0.38 0.94 16 30 H 0.10 2.06 6.23 -51.93 -0.32 1.73 16 31 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 32 H 0.04 1.29 6.60 -51.93 -0.34 0.95 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.06 0.94 7.99 -51.93 -0.42 0.53 16 36 H 0.09 1.16 6.81 -51.93 -0.35 0.81 16 37 H 0.40 3.17 8.71 -40.82 -0.36 2.81 16 38 H 0.39 2.43 8.62 -40.82 -0.35 2.08 16 39 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -39.20 394.49 -10.65 -49.85 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.34 Total: 1.39 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.13 Total: 4.34 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.60 Total: -56.56 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.51 Total: -22.65 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.20 -10.65 -49.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292088031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.199 kcal (2) G-P(sol) polarization free energy of solvation -39.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds