Wall clock time and date at job start Tue Mar 31 2020 14:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00382 * 2 1 4 4 N 1.46897 * 109.47173 * 124.62889 * 3 2 1 5 5 C 1.46902 * 110.99625 * 199.67157 * 4 3 2 6 6 C 1.50703 * 109.47600 * 66.04366 * 5 4 3 7 7 H 1.07998 * 119.99399 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00118 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99768 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47348 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.46936 * 120.00301 * 10 8 6 13 13 H 1.48503 * 109.47102 * 240.00253 * 10 8 6 14 14 C 1.46896 * 111.00310 * 75.71530 * 4 3 2 15 15 C 1.50695 * 109.47083 * 199.97318 * 14 4 3 16 16 O 1.21238 * 119.99946 * 355.78967 * 15 14 4 17 17 N 1.34781 * 120.00178 * 175.78807 * 15 14 4 18 18 C 1.34775 * 119.99877 * 179.97438 * 17 15 14 19 19 O 1.21531 * 120.00287 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99491 * 180.02562 * 18 17 15 21 21 C 1.46497 * 119.99884 * 180.02562 * 20 18 17 22 22 C 1.53008 * 109.46991 * 274.99811 * 21 20 18 23 23 C 1.53005 * 109.47004 * 179.97438 * 22 21 20 24 24 C 1.52996 * 109.46961 * 60.00405 * 23 22 21 25 25 C 1.53001 * 109.47349 * 299.99500 * 24 23 22 26 26 C 1.52998 * 109.47408 * 155.00153 * 21 20 18 27 27 H 1.08006 * 119.99989 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00460 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99594 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46997 * 4.62279 * 3 2 1 31 31 H 1.08998 * 109.46860 * 244.62926 * 3 2 1 32 32 H 1.08999 * 109.47173 * 186.04783 * 5 4 3 33 33 H 1.09006 * 109.46964 * 306.04072 * 5 4 3 34 34 H 0.96998 * 120.00161 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46966 * 79.97238 * 14 4 3 36 36 H 1.08998 * 109.47055 * 319.97488 * 14 4 3 37 37 H 0.97000 * 119.99811 * 359.97438 * 17 15 14 38 38 H 0.97000 * 120.00197 * 0.02562 * 20 18 17 39 39 H 1.08998 * 109.47671 * 34.99458 * 21 20 18 40 40 H 1.08994 * 109.47333 * 300.00151 * 22 21 20 41 41 H 1.09001 * 109.46574 * 60.00056 * 22 21 20 42 42 H 1.08994 * 109.47264 * 299.99725 * 23 22 21 43 43 H 1.08999 * 109.46575 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46835 * 179.97438 * 24 23 22 45 45 H 1.08994 * 109.47687 * 59.99579 * 24 23 22 46 46 H 1.09003 * 109.46880 * 300.00837 * 25 24 23 47 47 H 1.08993 * 109.47581 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.46877 * 299.99943 * 26 21 20 49 49 H 1.09004 * 109.47156 * 59.99966 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9900 1.3356 1.1396 5 6 3.3899 2.7132 1.4561 6 6 2.1918 3.4840 1.9473 7 1 1.2293 2.9991 2.0170 8 6 2.3243 4.8082 2.3077 9 7 3.4963 5.3988 2.2223 10 14 0.8389 5.7638 2.9159 11 1 -0.3530 4.8781 2.9170 12 1 1.0950 6.2519 4.2949 13 1 0.5938 6.9215 2.0186 14 6 4.1650 0.4914 0.8857 15 6 4.8288 0.1477 2.1942 16 8 4.4146 0.6264 3.2282 17 7 5.8831 -0.6917 2.2150 18 6 6.4771 -0.9986 3.3852 19 8 6.0619 -0.5188 4.4217 20 7 7.5316 -1.8377 3.4059 21 6 8.1770 -2.1717 4.6779 22 6 9.2113 -1.0981 5.0225 23 6 9.8849 -1.4466 6.3513 24 6 10.5801 -2.8041 6.2300 25 6 9.5459 -3.8778 5.8855 26 6 8.8723 -3.5291 4.5561 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3581 2.1320 0.0828 31 1 2.6265 1.3995 -0.9285 32 1 4.1563 2.7001 2.2311 33 1 3.7872 3.1910 0.5605 34 1 3.5895 6.3305 2.4755 35 1 4.8690 1.0299 0.2515 36 1 3.8526 -0.4251 0.3851 37 1 6.2143 -1.0750 1.3878 38 1 7.8633 -2.2204 2.5786 39 1 7.4252 -2.2180 5.4658 40 1 9.9631 -1.0517 4.2347 41 1 8.7159 -0.1310 5.1093 42 1 9.1328 -1.4926 7.1389 43 1 10.6213 -0.6815 6.5969 44 1 11.0603 -3.0522 7.1766 45 1 11.3321 -2.7582 5.4425 46 1 8.7937 -3.9237 6.6731 47 1 10.0410 -4.8450 5.7995 48 1 8.1355 -4.2940 4.3106 49 1 9.6243 -3.4828 3.7683 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292088031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:58 Heat of formation + Delta-G solvation = -76.923679 kcal Electronic energy + Delta-G solvation = -27608.235004 eV Core-core repulsion = 23762.504844 eV Total energy + Delta-G solvation = -3845.730160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21075 -40.27174 -38.99823 -37.97104 -35.76429 -35.02870 -34.93234 -33.91557 -31.69134 -30.63645 -29.84515 -28.33722 -26.02573 -24.46606 -23.58766 -22.93011 -22.05169 -21.57365 -20.96673 -20.47320 -19.59277 -18.57824 -18.33597 -17.21562 -16.98668 -16.72774 -16.38835 -16.00213 -15.81521 -15.71321 -15.39454 -15.18634 -14.96810 -14.90452 -14.68993 -14.15689 -13.95256 -13.82237 -13.47401 -13.38066 -13.13774 -13.06876 -12.80491 -12.56556 -12.52396 -12.29298 -12.15665 -12.06610 -11.97721 -11.69826 -11.48340 -11.38154 -11.28701 -11.23532 -11.12317 -10.66173 -10.55923 -10.20879 -10.09866 -8.99295 -8.21078 -6.28713 1.14264 1.28475 1.35235 1.38652 1.50924 1.53795 2.28104 2.38998 2.89163 3.12174 3.43684 3.70515 3.80552 3.82200 4.01743 4.08937 4.21476 4.27615 4.30361 4.35722 4.42509 4.44105 4.54035 4.56450 4.64231 4.70361 4.88198 4.92623 4.97214 5.05642 5.11333 5.17919 5.19905 5.20911 5.22546 5.30033 5.32809 5.38190 5.44840 5.53931 5.60974 5.67420 5.79470 6.05049 6.07249 6.34074 6.52606 6.71854 6.85881 7.26057 7.39100 7.41253 8.90781 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.002716 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.951177 B =10305.376692 C =11711.944120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.086 3.914 4 N -0.538 5.538 5 C 0.214 3.786 6 C -0.515 4.515 7 H 0.058 0.942 8 C -0.003 4.003 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.042 3.958 15 C 0.508 3.492 16 O -0.502 6.502 17 N -0.673 5.673 18 C 0.687 3.313 19 O -0.594 6.594 20 N -0.712 5.712 21 C 0.158 3.842 22 C -0.129 4.129 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.114 4.114 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.052 0.948 32 H -0.002 1.002 33 H -0.028 1.028 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.433 0.567 38 H 0.419 0.581 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.026 0.974 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.421 -23.836 -4.414 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.164 4.164 3 C -0.041 4.041 4 N -0.262 5.262 5 C 0.088 3.912 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.200 4.200 9 N -0.577 5.577 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.195 1.195 14 C -0.089 4.089 15 C 0.294 3.706 16 O -0.370 6.370 17 N -0.342 5.342 18 C 0.388 3.612 19 O -0.469 6.469 20 N -0.369 5.369 21 C 0.053 3.947 22 C -0.168 4.168 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.151 4.151 27 H 0.102 0.898 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.016 0.984 33 H -0.011 1.011 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.164 0.836 37 H 0.273 0.727 38 H 0.257 0.743 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.602 -23.115 -2.422 26.929 hybrid contribution 0.065 1.314 -0.658 1.471 sum 13.668 -21.801 -3.080 25.915 Atomic orbital electron populations 1.23930 0.95931 1.02179 1.00780 1.22937 0.96244 0.97609 0.99579 1.21192 0.95242 0.96862 0.90770 1.61602 1.14134 1.11759 1.38713 1.19354 0.95414 0.83431 0.93046 1.21453 0.95831 0.95329 1.42756 0.92359 1.25908 0.99127 0.98935 0.96030 1.70091 1.25046 1.12484 1.50042 0.85380 0.79280 0.78446 0.77803 1.18779 1.21075 1.19537 1.22092 0.93821 1.01363 0.91630 1.21649 0.79006 0.77185 0.92720 1.90875 1.61143 1.48397 1.36593 1.43932 1.32215 1.47180 1.10868 1.16514 0.80896 0.80199 0.83635 1.91057 1.66455 1.56083 1.33333 1.45147 1.31289 1.48488 1.12014 1.20983 0.93619 0.95766 0.84283 1.21918 0.98191 0.97494 0.99181 1.21509 0.99457 0.98723 0.95970 1.21553 0.97946 0.93227 1.02589 1.21525 0.98215 0.99486 0.96220 1.21778 1.00250 0.93401 0.99721 0.89771 0.86300 0.85460 0.91793 0.92969 0.98375 1.01075 0.92857 0.89895 0.83596 0.72721 0.74297 0.92672 0.89969 0.95491 0.93249 0.91464 0.91000 0.90566 0.92698 0.89302 0.90344 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.21 14.32 67.79 0.97 -4.24 16 2 C -0.15 -4.20 9.33 25.65 0.24 -3.97 16 3 C 0.09 3.16 5.24 85.56 0.45 3.61 16 4 N -0.54 -23.62 4.00 -909.96 -3.64 -27.26 16 5 C 0.21 12.05 4.33 85.56 0.37 12.42 16 6 C -0.52 -31.44 8.23 25.60 0.21 -31.22 16 7 H 0.06 3.53 7.31 -2.91 -0.02 3.51 16 8 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 9 N -0.94 -60.07 13.29 21.45 0.28 -59.78 16 10 Si 0.97 47.76 29.54 68.60 2.03 49.79 16 11 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.04 1.35 5.30 85.56 0.45 1.80 16 15 C 0.51 19.32 7.50 87.65 0.66 19.98 16 16 O -0.50 -27.15 13.46 19.86 0.27 -26.88 16 17 N -0.67 -17.58 5.24 -440.53 -2.31 -19.89 16 18 C 0.69 21.48 8.47 179.05 1.52 22.99 16 19 O -0.59 -27.31 14.41 18.95 0.27 -27.04 16 20 N -0.71 -13.47 5.08 -457.87 -2.33 -15.80 16 21 C 0.16 3.06 2.45 44.99 0.11 3.17 16 22 C -0.13 -2.64 5.49 30.60 0.17 -2.47 16 23 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 24 C -0.12 -1.26 5.92 30.59 0.18 -1.08 16 25 C -0.12 -1.16 5.93 30.61 0.18 -0.98 16 26 C -0.11 -1.17 5.39 30.61 0.17 -1.00 16 27 H 0.08 2.50 7.84 -2.91 -0.02 2.48 16 28 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 29 H 0.13 2.90 7.28 -2.91 -0.02 2.88 16 30 H 0.06 2.75 6.23 -2.38 -0.01 2.74 16 31 H 0.05 1.67 8.00 -2.39 -0.02 1.65 16 32 H 0.00 -0.12 6.60 -2.39 -0.02 -0.14 16 33 H -0.03 -1.64 8.12 -2.38 -0.02 -1.66 16 34 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.08 2.36 7.99 -2.39 -0.02 2.35 16 36 H 0.15 3.06 6.81 -2.39 -0.02 3.04 16 37 H 0.43 5.50 8.71 -92.71 -0.81 4.69 16 38 H 0.42 3.82 8.62 -92.71 -0.80 3.02 16 39 H 0.05 1.48 7.58 -2.39 -0.02 1.46 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -95.21 394.49 0.23 -94.98 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.66 Total: 14.41 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 6.32 Total: 17.47 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -7.99 Total: -122.73 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: 0.54 Total: -53.92 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -95.21 0.23 -94.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292088031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.058 kcal (2) G-P(sol) polarization free energy of solvation -95.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds