Wall clock time and date at job start Tue Mar 31 2020 13:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 H 1.09002 * 109.47292 * 54.55983 * 3 2 1 5 5 N 1.46898 * 109.47127 * 294.55819 * 3 2 1 6 6 C 1.46897 * 110.99791 * 150.09601 * 5 3 2 7 7 H 1.09000 * 109.47372 * 329.94195 * 6 5 3 8 8 C 1.53002 * 109.47253 * 209.93765 * 6 5 3 9 9 C 1.53002 * 109.46855 * 65.00024 * 8 6 5 10 10 C 1.50696 * 109.47540 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99559 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00427 * 179.72557 * 10 9 8 13 13 N 1.31513 * 120.00266 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99971 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47376 * 89.99459 * 14 12 10 16 16 H 1.48498 * 109.47109 * 210.00280 * 14 12 10 17 17 H 1.48503 * 109.46734 * 329.99727 * 14 12 10 18 18 C 1.50702 * 109.47298 * 89.94245 * 6 5 3 19 19 C 1.38236 * 120.00154 * 39.72406 * 18 6 5 20 20 C 1.38229 * 120.00387 * 179.78848 * 19 18 6 21 21 C 1.38240 * 119.99594 * 0.44327 * 20 19 18 22 22 C 1.38235 * 120.00292 * 359.81292 * 21 20 19 23 23 C 1.38231 * 119.99700 * 359.97438 * 22 21 20 24 24 C 1.50698 * 109.47140 * 174.55730 * 3 2 1 25 25 C 1.38237 * 119.99881 * 79.72589 * 24 3 2 26 26 C 1.38235 * 120.00021 * 179.78949 * 25 24 3 27 27 C 1.38237 * 119.99864 * 0.44137 * 26 25 24 28 28 C 1.38229 * 120.00016 * 359.81163 * 27 26 25 29 29 C 1.38237 * 120.00030 * 260.00113 * 24 3 2 30 30 H 1.09000 * 109.46772 * 295.54121 * 1 2 3 31 31 H 1.08997 * 109.47232 * 55.53929 * 1 2 3 32 32 H 1.08991 * 109.47351 * 175.53904 * 1 2 3 33 33 H 1.08995 * 109.47253 * 240.00255 * 2 1 3 34 34 H 1.09000 * 109.47397 * 120.00166 * 2 1 3 35 35 H 1.00900 * 111.00177 * 274.05054 * 5 3 2 36 36 H 1.08999 * 109.47437 * 305.00317 * 8 6 5 37 37 H 1.09001 * 109.47633 * 185.00105 * 8 6 5 38 38 H 1.09007 * 109.46646 * 60.00207 * 9 8 6 39 39 H 1.09001 * 109.47066 * 300.00428 * 9 8 6 40 40 H 0.96994 * 120.00187 * 180.02562 * 13 12 10 41 41 H 1.08001 * 119.99440 * 359.97438 * 19 18 6 42 42 H 1.08000 * 120.00273 * 180.27296 * 20 19 18 43 43 H 1.08003 * 119.99603 * 179.83355 * 21 20 19 44 44 H 1.07997 * 119.99883 * 180.02562 * 22 21 20 45 45 H 1.08007 * 119.99939 * 180.02562 * 23 22 21 46 46 H 1.07999 * 120.00160 * 0.02562 * 25 24 3 47 47 H 1.07998 * 120.00332 * 180.27581 * 26 25 24 48 48 H 1.07999 * 120.00117 * 179.83549 * 27 26 25 49 49 H 1.08004 * 119.99940 * 179.97438 * 28 27 26 50 50 H 1.07995 * 120.00260 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 0.8373 5 7 1.6605 2.0960 -1.2597 6 6 1.4671 3.5394 -1.0665 7 1 1.1237 3.7270 -0.0492 8 6 0.4224 4.0515 -2.0601 9 6 -0.9337 3.4159 -1.7472 10 6 -1.9626 3.9198 -2.7261 11 1 -1.6778 4.6234 -3.4945 12 6 -3.2663 3.4787 -2.6442 13 7 -4.1641 3.9180 -3.4989 14 14 -3.7575 2.2570 -1.3192 15 1 -4.1915 2.9923 -0.1043 16 1 -4.8754 1.4136 -1.8133 17 1 -2.5957 1.3938 -0.9867 18 6 2.7726 4.2564 -1.2962 19 6 3.6097 3.8567 -2.3211 20 6 4.8051 4.5171 -2.5346 21 6 5.1678 5.5714 -1.7172 22 6 4.3332 5.9677 -0.6890 23 6 3.1357 5.3101 -0.4783 24 6 3.5409 1.4447 0.1348 25 6 4.3344 1.1950 -0.9694 26 6 5.7113 1.2013 -0.8467 27 6 6.2946 1.4482 0.3820 28 6 5.5011 1.6927 1.4872 29 6 4.1242 1.6907 1.3637 30 1 -0.3633 0.4431 0.9272 31 1 -0.3633 0.5815 -0.8473 32 1 -0.3633 -1.0245 -0.0799 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3432 1.9160 -1.9805 36 1 0.7233 3.7851 -3.0733 37 1 0.3433 5.1355 -1.9778 38 1 -1.2346 3.6824 -0.7339 39 1 -0.8545 2.3319 -1.8295 40 1 -5.0814 3.6080 -3.4410 41 1 3.3282 3.0304 -2.9570 42 1 5.4570 4.2077 -3.3381 43 1 6.1030 6.0857 -1.8824 44 1 4.6164 6.7916 -0.0508 45 1 2.4834 5.6199 0.3248 46 1 3.8786 0.9988 -1.9286 47 1 6.3312 1.0106 -1.7102 48 1 7.3702 1.4505 0.4784 49 1 5.9568 1.8852 2.4472 50 1 3.5043 1.8818 2.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340456190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:44 Heat of formation + Delta-G solvation = 38.433119 kcal Electronic energy + Delta-G solvation = -28093.888879 eV Core-core repulsion = 24664.010229 eV Total energy + Delta-G solvation = -3429.878651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.19039 -38.95065 -36.88651 -34.46200 -32.77494 -31.27649 -31.02677 -30.69753 -30.43077 -29.82115 -26.58502 -25.14567 -23.41195 -22.66825 -22.40111 -22.04524 -20.76422 -20.19800 -19.62395 -17.49743 -16.76571 -16.49227 -15.74367 -15.57965 -15.03571 -14.72596 -14.48567 -14.16619 -14.12454 -14.02895 -13.63024 -13.47125 -13.27385 -13.13095 -12.83458 -12.70242 -12.44917 -12.17034 -11.92336 -11.82921 -11.56604 -11.37962 -11.33967 -11.06503 -10.96116 -10.87929 -10.70793 -10.58822 -10.40043 -9.81092 -9.72621 -9.57829 -9.03770 -9.01713 -8.81466 -8.72770 -8.42042 -8.38134 -8.15245 -5.93115 -3.89304 1.29330 1.33467 1.51164 1.53773 3.39150 3.46630 3.52818 3.73456 3.92182 4.35392 4.56330 4.64437 4.79164 4.90200 4.90992 4.97141 5.02664 5.06778 5.19522 5.26323 5.33252 5.42387 5.44624 5.48212 5.56958 5.59824 5.66960 5.70491 5.84684 5.94471 5.96646 5.99549 6.10113 6.11300 6.16097 6.25602 6.36614 6.40059 6.42461 6.45858 6.53971 6.54856 6.59970 6.69088 6.74505 6.83020 6.94436 7.07103 7.13668 7.32999 7.51904 7.62241 7.75378 7.95085 8.67013 9.13241 9.70692 11.20740 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.004416 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.408690 B = 6338.649420 C = 7785.530080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C 0.123 3.877 4 H 0.083 0.917 5 N -0.659 5.659 6 C 0.123 3.877 7 H 0.079 0.921 8 C -0.083 4.083 9 C -0.005 4.005 10 C -0.516 4.516 11 H 0.067 0.933 12 C 0.064 3.936 13 N -0.910 5.910 14 Si 0.876 3.124 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.256 1.256 18 C -0.091 4.091 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.096 4.096 25 C -0.110 4.110 26 C -0.113 4.113 27 C -0.127 4.127 28 C -0.119 4.119 29 C -0.113 4.113 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.339 0.661 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.002 0.998 39 H 0.035 0.965 40 H 0.260 0.740 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.473 -4.500 9.017 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 C 0.013 3.987 4 H 0.101 0.899 5 N -0.290 5.290 6 C 0.013 3.987 7 H 0.097 0.903 8 C -0.121 4.121 9 C -0.042 4.042 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.136 4.136 13 N -0.549 5.549 14 Si 0.703 3.297 15 H -0.208 1.208 16 H -0.218 1.218 17 H -0.180 1.180 18 C -0.092 4.092 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.132 4.132 24 C -0.098 4.098 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.145 4.145 28 C -0.137 4.137 29 C -0.132 4.132 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 21.582 -4.687 9.009 23.852 hybrid contribution 0.654 -0.131 0.724 0.984 sum 22.236 -4.818 9.733 24.747 Atomic orbital electron populations 1.21796 0.94644 1.01195 1.03271 1.21453 0.96892 0.94315 1.01169 1.20786 0.87981 0.96458 0.93504 0.89908 1.60882 1.51353 1.10011 1.06791 1.20964 0.91018 0.85629 1.01068 0.90293 1.21453 0.94779 0.98912 0.96915 1.19499 0.91610 0.97339 0.95742 1.21236 0.92854 1.26422 1.14853 0.91463 1.25016 0.96581 0.96223 0.95761 1.69929 1.02896 1.44991 1.37118 0.86832 0.78481 0.82133 0.82209 1.20752 1.21832 1.17990 1.20802 0.96875 0.96533 0.95032 1.20847 0.94447 1.00052 0.97603 1.20996 0.96706 0.96303 0.99242 1.21013 0.99610 0.97880 0.96302 1.21055 0.94832 0.99691 0.98095 1.21013 0.96559 0.96071 0.99571 1.20735 0.97231 0.98219 0.93589 1.20877 0.93610 1.00085 0.98235 1.21028 0.94770 0.99986 0.97340 1.21050 0.99425 1.00879 0.93140 1.21074 0.93855 1.00291 0.98467 1.21003 0.94780 1.00398 0.97023 0.93599 0.89865 0.93689 0.92031 0.92556 0.83792 0.92668 0.92851 0.97970 0.94720 0.93002 0.86525 0.86678 0.86821 0.86689 0.86455 0.86389 0.86510 0.86673 0.86597 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.85 37.16 0.37 -1.85 16 2 C -0.10 -1.25 5.58 -26.73 -0.15 -1.40 16 3 C 0.12 1.56 2.24 -68.87 -0.15 1.41 16 4 H 0.08 1.10 7.14 -51.93 -0.37 0.73 16 5 N -0.66 -9.44 4.91 -102.17 -0.50 -9.94 16 6 C 0.12 1.91 2.24 -68.86 -0.15 1.75 16 7 H 0.08 1.25 7.14 -51.93 -0.37 0.88 16 8 C -0.08 -1.62 4.81 -26.73 -0.13 -1.74 16 9 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 10 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 11 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 12 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.91 -28.61 13.96 55.43 0.77 -27.83 16 14 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 H -0.26 -6.02 6.46 56.52 0.37 -5.65 16 18 C -0.09 -1.27 4.31 -104.62 -0.45 -1.72 16 19 C -0.11 -1.44 7.39 -39.59 -0.29 -1.73 16 20 C -0.11 -1.34 10.05 -39.58 -0.40 -1.74 16 21 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.11 -1.51 9.67 -39.58 -0.38 -1.90 16 24 C -0.10 -1.11 4.31 -104.62 -0.45 -1.57 16 25 C -0.11 -1.21 7.38 -39.58 -0.29 -1.50 16 26 C -0.11 -1.15 10.05 -39.58 -0.40 -1.54 16 27 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 28 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 29 C -0.11 -1.26 9.67 -39.58 -0.38 -1.64 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.46 6.31 -51.93 -0.33 1.14 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.34 4.51 3.83 -39.29 -0.15 4.36 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.00 0.05 7.58 -51.93 -0.39 -0.35 16 39 H 0.03 0.82 5.53 -51.93 -0.29 0.53 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.12 1.44 6.35 -52.49 -0.33 1.11 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.12 1.47 8.04 -52.48 -0.42 1.05 16 46 H 0.12 1.24 6.38 -52.49 -0.33 0.91 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 49 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 50 H 0.12 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -31.42 393.66 -11.94 -43.36 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.08 Total: 6.90 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: -5.40 Total: -35.70 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.27 Total: -37.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.42 -11.94 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.790 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds