Wall clock time and date at job start Tue Mar 31 2020 13:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 H 1.09002 * 109.47292 * 54.55983 * 3 2 1 5 5 N 1.46898 * 109.47127 * 294.55819 * 3 2 1 6 6 C 1.46897 * 110.99791 * 150.09601 * 5 3 2 7 7 H 1.09000 * 109.47372 * 329.94195 * 6 5 3 8 8 C 1.53002 * 109.47253 * 209.93765 * 6 5 3 9 9 C 1.53002 * 109.46855 * 65.00024 * 8 6 5 10 10 C 1.50696 * 109.47540 * 180.02562 * 9 8 6 11 11 H 1.08007 * 119.99559 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00427 * 179.72557 * 10 9 8 13 13 N 1.31513 * 120.00266 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99971 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47376 * 89.99459 * 14 12 10 16 16 H 1.48498 * 109.47109 * 210.00280 * 14 12 10 17 17 H 1.48503 * 109.46734 * 329.99727 * 14 12 10 18 18 C 1.50702 * 109.47298 * 89.94245 * 6 5 3 19 19 C 1.38236 * 120.00154 * 39.72406 * 18 6 5 20 20 C 1.38229 * 120.00387 * 179.78848 * 19 18 6 21 21 C 1.38240 * 119.99594 * 0.44327 * 20 19 18 22 22 C 1.38235 * 120.00292 * 359.81292 * 21 20 19 23 23 C 1.38231 * 119.99700 * 359.97438 * 22 21 20 24 24 C 1.50698 * 109.47140 * 174.55730 * 3 2 1 25 25 C 1.38237 * 119.99881 * 79.72589 * 24 3 2 26 26 C 1.38235 * 120.00021 * 179.78949 * 25 24 3 27 27 C 1.38237 * 119.99864 * 0.44137 * 26 25 24 28 28 C 1.38229 * 120.00016 * 359.81163 * 27 26 25 29 29 C 1.38237 * 120.00030 * 260.00113 * 24 3 2 30 30 H 1.09000 * 109.46772 * 295.54121 * 1 2 3 31 31 H 1.08997 * 109.47232 * 55.53929 * 1 2 3 32 32 H 1.08991 * 109.47351 * 175.53904 * 1 2 3 33 33 H 1.08995 * 109.47253 * 240.00255 * 2 1 3 34 34 H 1.09000 * 109.47397 * 120.00166 * 2 1 3 35 35 H 1.00900 * 111.00177 * 274.05054 * 5 3 2 36 36 H 1.08999 * 109.47437 * 305.00317 * 8 6 5 37 37 H 1.09001 * 109.47633 * 185.00105 * 8 6 5 38 38 H 1.09007 * 109.46646 * 60.00207 * 9 8 6 39 39 H 1.09001 * 109.47066 * 300.00428 * 9 8 6 40 40 H 0.96994 * 120.00187 * 180.02562 * 13 12 10 41 41 H 1.08001 * 119.99440 * 359.97438 * 19 18 6 42 42 H 1.08000 * 120.00273 * 180.27296 * 20 19 18 43 43 H 1.08003 * 119.99603 * 179.83355 * 21 20 19 44 44 H 1.07997 * 119.99883 * 180.02562 * 22 21 20 45 45 H 1.08007 * 119.99939 * 180.02562 * 23 22 21 46 46 H 1.07999 * 120.00160 * 0.02562 * 25 24 3 47 47 H 1.07998 * 120.00332 * 180.27581 * 26 25 24 48 48 H 1.07999 * 120.00117 * 179.83549 * 27 26 25 49 49 H 1.08004 * 119.99940 * 179.97438 * 28 27 26 50 50 H 1.07995 * 120.00260 * 359.97438 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 0.8373 5 7 1.6605 2.0960 -1.2597 6 6 1.4671 3.5394 -1.0665 7 1 1.1237 3.7270 -0.0492 8 6 0.4224 4.0515 -2.0601 9 6 -0.9337 3.4159 -1.7472 10 6 -1.9626 3.9198 -2.7261 11 1 -1.6778 4.6234 -3.4945 12 6 -3.2663 3.4787 -2.6442 13 7 -4.1641 3.9180 -3.4989 14 14 -3.7575 2.2570 -1.3192 15 1 -4.1915 2.9923 -0.1043 16 1 -4.8754 1.4136 -1.8133 17 1 -2.5957 1.3938 -0.9867 18 6 2.7726 4.2564 -1.2962 19 6 3.6097 3.8567 -2.3211 20 6 4.8051 4.5171 -2.5346 21 6 5.1678 5.5714 -1.7172 22 6 4.3332 5.9677 -0.6890 23 6 3.1357 5.3101 -0.4783 24 6 3.5409 1.4447 0.1348 25 6 4.3344 1.1950 -0.9694 26 6 5.7113 1.2013 -0.8467 27 6 6.2946 1.4482 0.3820 28 6 5.5011 1.6927 1.4872 29 6 4.1242 1.6907 1.3637 30 1 -0.3633 0.4431 0.9272 31 1 -0.3633 0.5815 -0.8473 32 1 -0.3633 -1.0245 -0.0799 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3432 1.9160 -1.9805 36 1 0.7233 3.7851 -3.0733 37 1 0.3433 5.1355 -1.9778 38 1 -1.2346 3.6824 -0.7339 39 1 -0.8545 2.3319 -1.8295 40 1 -5.0814 3.6080 -3.4410 41 1 3.3282 3.0304 -2.9570 42 1 5.4570 4.2077 -3.3381 43 1 6.1030 6.0857 -1.8824 44 1 4.6164 6.7916 -0.0508 45 1 2.4834 5.6199 0.3248 46 1 3.8786 0.9988 -1.9286 47 1 6.3312 1.0106 -1.7102 48 1 7.3702 1.4505 0.4784 49 1 5.9568 1.8852 2.4472 50 1 3.5043 1.8818 2.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340456190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:43 Heat of formation + Delta-G solvation = 23.860531 kcal Electronic energy + Delta-G solvation = -28094.520794 eV Core-core repulsion = 24664.010229 eV Total energy + Delta-G solvation = -3430.510566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.194 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.15214 -39.83016 -37.92293 -35.89471 -34.62986 -32.63410 -31.94239 -31.74414 -31.52196 -30.80616 -28.18749 -26.27456 -24.81683 -23.62323 -23.29959 -22.93890 -22.25538 -21.20140 -21.00228 -18.85729 -18.38112 -17.50743 -16.79172 -16.52023 -16.20534 -15.87146 -15.66330 -15.52756 -15.27353 -15.15981 -14.79512 -14.72231 -14.30424 -14.19123 -14.11848 -13.78412 -13.68998 -13.48408 -13.30886 -13.00817 -12.86890 -12.71788 -12.56216 -12.32482 -11.95216 -11.92338 -11.85334 -11.73001 -11.67022 -11.59284 -11.46286 -11.34377 -11.11798 -10.68027 -9.87956 -9.68486 -9.63100 -9.36056 -9.25763 -8.23720 -6.25708 0.46895 0.52792 0.58055 0.63696 1.38233 1.41030 1.55647 2.41950 2.92723 2.98607 3.12998 3.24992 3.73867 3.81551 3.98024 4.06113 4.16612 4.20422 4.29751 4.29872 4.30751 4.33303 4.41174 4.56551 4.57927 4.66460 4.68514 4.72711 4.76539 4.81941 4.87166 4.98941 5.06925 5.12447 5.15533 5.19324 5.20220 5.21113 5.28535 5.33799 5.55187 5.60584 5.62969 5.63719 5.64126 5.67528 5.69017 5.73705 5.77660 5.86883 6.18392 6.18796 6.26758 6.37112 6.54951 6.82958 7.38425 8.93474 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.004416 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.408690 B = 6338.649420 C = 7785.530080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C 0.128 3.872 4 H 0.075 0.925 5 N -0.670 5.670 6 C 0.139 3.861 7 H 0.075 0.925 8 C -0.073 4.073 9 C 0.006 3.994 10 C -0.527 4.527 11 H 0.024 0.976 12 C 0.003 3.997 13 N -0.958 5.958 14 Si 0.946 3.054 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.232 1.232 18 C -0.104 4.104 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.126 4.126 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.344 0.656 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.005 0.995 39 H 0.038 0.962 40 H 0.263 0.737 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.134 0.866 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.308 -5.569 10.774 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C 0.018 3.982 4 H 0.093 0.907 5 N -0.302 5.302 6 C 0.029 3.971 7 H 0.093 0.907 8 C -0.112 4.112 9 C -0.031 4.031 10 C -0.565 4.565 11 H 0.042 0.958 12 C -0.193 4.193 13 N -0.599 5.599 14 Si 0.769 3.231 15 H -0.198 1.198 16 H -0.216 1.216 17 H -0.155 1.155 18 C -0.105 4.105 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.147 4.147 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.105 4.105 25 C -0.136 4.136 26 C -0.136 4.136 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.144 4.144 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.168 0.832 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.023 0.977 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.152 0.848 48 H 0.154 0.846 49 H 0.152 0.848 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 24.445 -5.756 10.770 27.325 hybrid contribution -0.168 0.283 0.092 0.342 sum 24.277 -5.473 10.863 27.153 Atomic orbital electron populations 1.21760 0.96118 1.01176 1.01767 1.21403 0.95441 0.94365 1.01944 1.20688 0.89123 0.96146 0.92231 0.90680 1.60797 1.52135 1.09229 1.08004 1.20546 0.90831 0.86655 0.99067 0.90717 1.21263 0.94325 0.97896 0.97683 1.19363 0.92194 0.97440 0.94147 1.21619 0.94481 1.25531 1.14839 0.95757 1.25994 0.96490 0.98445 0.98379 1.70089 1.03474 1.46904 1.39466 0.85723 0.78766 0.79670 0.78895 1.19784 1.21568 1.15530 1.20606 0.96414 0.97226 0.96286 1.20929 0.94971 1.00367 0.97336 1.21283 0.96375 0.96090 0.99749 1.21370 1.00343 0.97476 0.95500 1.21332 0.94234 0.99973 0.98554 1.21162 0.97492 0.96225 0.99835 1.20576 0.96273 0.99412 0.94234 1.20938 0.94198 1.00418 0.98015 1.21272 0.94521 0.99509 0.98255 1.21361 1.00614 0.99951 0.92813 1.21338 0.93522 0.99782 0.99545 1.21160 0.95553 1.00706 0.97006 0.93566 0.93002 0.92703 0.91914 0.90998 0.83238 0.93825 0.94205 0.97710 0.94376 0.92809 0.86512 0.84523 0.84245 0.84658 0.86377 0.86495 0.84818 0.84563 0.84799 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.85 71.98 0.71 -3.49 16 2 C -0.09 -2.20 5.58 30.60 0.17 -2.03 16 3 C 0.13 3.14 2.24 44.17 0.10 3.24 16 4 H 0.08 1.94 7.14 -2.39 -0.02 1.92 16 5 N -0.67 -19.00 4.91 -477.16 -2.34 -21.35 16 6 C 0.14 4.34 2.24 44.17 0.10 4.44 16 7 H 0.07 2.37 7.14 -2.39 -0.02 2.35 16 8 C -0.07 -2.97 4.81 30.60 0.15 -2.82 16 9 C 0.01 0.28 3.93 29.85 0.12 0.40 16 10 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 11 H 0.02 1.60 7.99 -2.91 -0.02 1.58 16 12 C 0.00 0.15 5.47 84.65 0.46 0.62 16 13 N -0.96 -62.22 13.96 21.45 0.30 -61.92 16 14 Si 0.95 45.73 27.47 68.60 1.88 47.61 16 15 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 H -0.23 -10.28 6.46 99.48 0.64 -9.64 16 18 C -0.10 -2.84 4.31 -19.86 -0.09 -2.93 16 19 C -0.12 -2.91 7.39 22.27 0.16 -2.75 16 20 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 21 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 22 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 23 C -0.13 -3.31 9.67 22.27 0.22 -3.09 16 24 C -0.10 -2.25 4.31 -19.87 -0.09 -2.33 16 25 C -0.12 -2.38 7.38 22.27 0.16 -2.22 16 26 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 27 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 28 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 29 C -0.13 -2.55 9.67 22.27 0.22 -2.34 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.77 6.31 -2.39 -0.02 1.76 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.34 9.05 3.83 -89.69 -0.34 8.70 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.00 0.22 7.58 -2.38 -0.02 0.20 16 39 H 0.04 1.81 5.53 -2.39 -0.01 1.80 16 40 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 41 H 0.12 2.81 6.35 -2.91 -0.02 2.79 16 42 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.12 2.91 8.04 -2.91 -0.02 2.89 16 46 H 0.12 2.33 6.38 -2.91 -0.02 2.31 16 47 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 48 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 49 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 50 H 0.12 2.26 8.04 -2.91 -0.02 2.23 16 Total: -1.00 -69.67 393.66 4.32 -65.35 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.50 Total: 29.67 kcal Atomic # 6 Polarization: -63.34 SS G_CDS: 3.98 Total: -59.36 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.04 Total: -83.27 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -69.67 4.32 -65.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340456190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.208 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds