Wall clock time and date at job start Tue Mar 31 2020 13:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45207 * 109.47085 * 2 1 4 4 C 1.34223 * 116.99879 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00285 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99798 * 180.27419 * 4 3 2 7 7 N 1.46504 * 109.46977 * 179.72937 * 6 4 3 8 8 N 1.40080 * 126.03843 * 90.02911 * 7 6 4 9 9 C 1.30832 * 108.20753 * 180.02562 * 8 7 6 10 10 C 1.50698 * 125.90010 * 179.97438 * 9 8 7 11 11 C 1.39871 * 108.20425 * 359.97438 * 9 8 7 12 12 C 1.50695 * 126.04687 * 180.02562 * 11 9 8 13 13 N 1.46900 * 109.47325 * 89.97486 * 12 11 9 14 14 C 1.46900 * 111.00435 * 174.82366 * 13 12 11 15 15 H 1.09002 * 109.46767 * 325.91256 * 14 13 12 16 16 C 1.50697 * 109.47367 * 205.91119 * 14 13 12 17 17 H 1.08002 * 119.99613 * 359.97438 * 16 14 13 18 18 C 1.37874 * 120.00096 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99735 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00143 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46790 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46980 * 120.00109 * 20 18 16 23 23 H 1.48493 * 109.47308 * 240.00182 * 20 18 16 24 24 C 1.53000 * 109.47133 * 85.90648 * 14 13 12 25 25 C 1.53002 * 109.46746 * 65.16459 * 24 14 13 26 26 C 1.34953 * 126.03609 * 269.71687 * 7 6 4 27 27 C 1.50699 * 126.12564 * 359.97438 * 26 7 6 28 28 H 1.09002 * 109.46819 * 60.00083 * 1 2 3 29 29 H 1.09000 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47262 * 300.00077 * 1 2 3 31 31 H 1.08997 * 109.47695 * 240.00240 * 2 1 3 32 32 H 1.09001 * 109.47273 * 119.99641 * 2 1 3 33 33 H 1.08997 * 109.47284 * 299.72923 * 6 4 3 34 34 H 1.09002 * 109.46516 * 59.73200 * 6 4 3 35 35 H 1.09004 * 109.47434 * 90.02421 * 10 9 8 36 36 H 1.09003 * 109.46897 * 210.01836 * 10 9 8 37 37 H 1.09000 * 109.46942 * 330.02008 * 10 9 8 38 38 H 1.08996 * 109.47696 * 209.97783 * 12 11 9 39 39 H 1.09010 * 109.46661 * 329.98113 * 12 11 9 40 40 H 1.00905 * 111.00200 * 298.78084 * 13 12 11 41 41 H 0.97006 * 119.99804 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.46989 * 185.16184 * 24 14 13 43 43 H 1.09000 * 109.47675 * 305.16869 * 24 14 13 44 44 H 1.08999 * 109.47309 * 54.85138 * 25 24 14 45 45 H 1.09002 * 109.47165 * 174.84964 * 25 24 14 46 46 H 1.08998 * 109.47551 * 294.84506 * 25 24 14 47 47 H 1.09004 * 109.46868 * 90.02599 * 27 26 7 48 48 H 1.08996 * 109.47412 * 210.02202 * 27 26 7 49 49 H 1.08996 * 109.47788 * 330.03050 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0068 7 7 5.3837 2.8608 0.0127 8 7 6.2114 2.8214 -1.1167 9 6 7.4535 2.7543 -0.7111 10 6 8.6705 2.6929 -1.5977 11 6 7.4567 2.7494 0.6876 12 6 8.6755 2.6825 1.5713 13 7 9.1445 4.0438 1.8626 14 6 10.2577 4.0234 2.8210 15 1 10.1148 3.2048 3.5264 16 6 10.2997 5.3304 3.5700 17 1 9.5725 6.0994 3.3553 18 6 11.2665 5.5443 4.5295 19 7 12.1523 4.6080 4.7906 20 14 11.3190 7.1647 5.4575 21 1 10.2216 8.0441 4.9803 22 1 11.1512 6.9085 6.9106 23 1 12.6255 7.8292 5.2196 24 6 11.5749 3.8242 2.0686 25 6 11.8388 5.0361 1.1728 26 6 6.1723 2.8216 1.1071 27 6 5.7057 2.8494 2.5398 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.5885 3.4721 -0.8830 34 1 3.5810 3.4671 0.8969 35 1 9.0185 3.7043 -1.8077 36 1 9.4594 2.1346 -1.0936 37 1 8.4139 2.1954 -2.5330 38 1 8.4212 2.1786 2.5037 39 1 9.4637 2.1280 1.0618 40 1 9.4057 4.5254 1.0153 41 1 12.8323 4.7583 5.4658 42 1 12.3897 3.7173 2.7846 43 1 11.5104 2.9258 1.4546 44 1 11.8125 5.9450 1.7740 45 1 12.8193 4.9370 0.7069 46 1 11.0729 5.0899 0.3992 47 1 5.5395 1.8298 2.8876 48 1 6.4650 3.3255 3.1601 49 1 4.7751 3.4127 2.6081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437970607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:56 Heat of formation + Delta-G solvation = -17.635695 kcal Electronic energy + Delta-G solvation = -27859.205777 eV Core-core repulsion = 24016.046536 eV Total energy + Delta-G solvation = -3843.159240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40067 -40.49526 -37.03875 -36.44540 -34.26350 -33.01556 -32.25100 -31.64115 -30.42566 -29.67359 -27.58265 -26.37135 -25.94258 -23.93730 -23.31264 -22.92792 -21.52152 -19.51246 -19.24813 -19.12133 -18.23620 -17.03623 -16.94095 -16.23421 -15.90470 -14.99385 -14.87684 -14.67227 -14.48686 -13.77289 -13.71512 -13.48064 -13.31763 -13.22086 -13.04867 -12.89139 -12.62025 -12.52542 -12.36789 -12.23328 -12.15734 -11.99369 -11.91673 -11.77742 -11.56116 -11.35777 -10.92366 -10.90353 -10.83957 -10.67951 -10.45881 -10.22304 -9.91775 -9.70953 -9.48844 -8.92083 -8.89344 -8.29716 -8.01834 -7.06597 -5.92494 -3.93480 1.68652 1.84200 2.24419 2.74571 3.02915 3.33780 3.42203 3.47069 4.25854 4.34745 4.49033 4.52091 4.56817 4.74078 4.82808 4.86005 5.01300 5.20515 5.25475 5.34836 5.39046 5.48341 5.53726 5.61054 5.67869 5.79719 5.81120 5.92287 6.04040 6.08156 6.11397 6.32717 6.39666 6.42919 6.44220 6.62554 6.65400 6.93366 6.97271 7.13435 7.35773 7.37598 7.42074 7.58813 7.77943 7.92732 7.96089 8.36780 8.66865 8.72018 9.13169 9.70120 11.14330 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002669 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.651716 B =10489.293233 C =11363.137149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.442 3.558 5 O -0.485 6.485 6 C 0.151 3.849 7 N -0.375 5.375 8 N -0.299 5.299 9 C 0.090 3.910 10 C -0.073 4.073 11 C -0.208 4.208 12 C 0.136 3.864 13 N -0.679 5.679 14 C 0.214 3.786 15 H 0.032 0.968 16 C -0.483 4.483 17 H 0.061 0.939 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.145 4.145 25 C -0.129 4.129 26 C 0.109 3.891 27 C -0.095 4.095 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.326 0.674 41 H 0.257 0.743 42 H 0.091 0.909 43 H 0.011 0.989 44 H 0.068 0.932 45 H 0.022 0.978 46 H 0.028 0.972 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.161 -6.709 -9.811 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.276 6.276 4 C 0.281 3.719 5 O -0.370 6.370 6 C 0.026 3.974 7 N -0.159 5.159 8 N -0.120 5.120 9 C -0.077 4.077 10 C -0.131 4.131 11 C -0.219 4.219 12 C 0.005 3.995 13 N -0.309 5.309 14 C 0.107 3.893 15 H 0.049 0.951 16 C -0.522 4.522 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.185 4.185 25 C -0.187 4.187 26 C -0.016 4.016 27 C -0.153 4.153 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.144 0.856 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.030 0.970 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.122 0.878 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.210 -6.908 -10.194 23.666 hybrid contribution 1.280 0.221 0.627 1.442 sum -18.930 -6.687 -9.567 22.240 Atomic orbital electron populations 1.21812 0.92355 1.03114 1.03627 1.23063 0.95432 0.79833 1.02806 1.86474 1.23954 1.32891 1.84251 1.24144 0.81027 0.93203 0.73479 1.90748 1.60297 1.42545 1.43396 1.20799 0.77180 0.91393 1.07986 1.47636 1.03712 1.60214 1.04307 1.77224 1.01060 1.26646 1.07083 1.22218 0.93290 0.98280 0.93911 1.20183 0.92304 1.03064 0.97590 1.19834 0.94391 1.14678 0.93009 1.20120 0.90942 0.92478 0.95940 1.60837 1.40491 1.13254 1.16356 1.19225 0.83521 0.97476 0.89116 0.95055 1.21109 1.12560 1.00359 1.18187 0.92076 1.24912 0.95802 0.96578 0.97162 1.69897 1.17457 1.32974 1.33307 0.86557 0.77690 0.84207 0.79643 1.19827 1.21308 1.21323 1.22099 1.04278 0.93902 0.98194 1.21593 0.97276 1.01370 0.98443 1.20781 0.90648 1.00106 0.90048 1.20520 1.02482 1.02690 0.89598 0.91395 0.90118 0.91322 0.91166 0.91072 0.84791 0.84878 0.90356 0.90345 0.91300 0.91398 0.95708 0.85579 0.93279 0.89056 0.97048 0.91342 0.95894 0.95341 0.90789 0.87775 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.36 -3.44 10.22 -39.24 -0.40 -3.84 16 4 C 0.44 5.16 8.03 36.01 0.29 5.45 16 5 O -0.48 -7.60 16.18 -18.75 -0.30 -7.90 16 6 C 0.15 1.54 6.84 -5.19 -0.04 1.50 16 7 N -0.37 -5.54 3.10 -58.31 -0.18 -5.72 16 8 N -0.30 -5.01 12.57 33.67 0.42 -4.59 16 9 C 0.09 1.50 7.22 -82.41 -0.59 0.90 16 10 C -0.07 -0.98 10.26 36.00 0.37 -0.62 16 11 C -0.21 -3.59 5.66 -105.05 -0.59 -4.19 16 12 C 0.14 2.50 5.41 -4.98 -0.03 2.48 16 13 N -0.68 -14.12 6.19 -109.22 -0.68 -14.80 16 14 C 0.21 5.17 2.33 -68.87 -0.16 5.01 16 15 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 16 C -0.48 -12.82 7.25 -34.44 -0.25 -13.07 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.06 1.50 5.28 -17.82 -0.09 1.41 16 19 N -0.90 -25.06 11.38 55.43 0.63 -24.42 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 C -0.15 -3.35 5.51 -26.73 -0.15 -3.50 16 25 C -0.13 -2.73 9.40 37.16 0.35 -2.38 16 26 C 0.11 1.71 6.93 -82.26 -0.57 1.14 16 27 C -0.09 -1.23 9.72 36.00 0.35 -0.88 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.13 0.93 7.04 -51.93 -0.37 0.57 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.03 7.26 -51.93 -0.38 0.66 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.28 7.58 -51.93 -0.39 0.88 16 39 H 0.02 0.46 6.65 -51.92 -0.35 0.11 16 40 H 0.33 6.68 6.69 -39.29 -0.26 6.41 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.09 2.38 6.23 -51.93 -0.32 2.06 16 43 H 0.01 0.23 7.50 -51.93 -0.39 -0.15 16 44 H 0.07 1.59 6.85 -51.93 -0.36 1.24 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.03 0.54 6.63 -51.93 -0.34 0.19 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.10 1.53 7.79 -51.93 -0.40 1.13 16 49 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 LS Contribution 399.35 15.07 6.02 6.02 Total: -1.00 -32.54 399.35 -8.12 -40.66 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.10 Total: 4.85 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.50 Total: -6.40 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.20 Total: -49.53 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.70 Total: -11.75 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.54 -8.12 -40.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437970607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.021 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds