Wall clock time and date at job start Tue Mar 31 2020 14:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 N 1.46493 * 109.47468 * 120.00380 * 2 1 3 5 5 C 1.46763 * 124.35209 * 119.94716 * 4 2 1 6 6 C 1.54482 * 105.47607 * 197.04039 * 5 4 2 7 7 H 1.08996 * 111.00555 * 92.71880 * 6 5 4 8 8 C 1.50707 * 110.97113 * 216.46866 * 6 5 4 9 9 O 1.21285 * 119.99449 * 353.82849 * 8 6 5 10 10 N 1.34773 * 120.00047 * 173.83318 * 8 6 5 11 11 C 1.46923 * 120.62750 * 179.97438 * 10 8 6 12 12 C 1.53196 * 108.77455 * 233.58193 * 11 10 8 13 13 C 1.53038 * 109.31164 * 305.36559 * 12 11 10 14 14 N 1.46505 * 109.45776 * 181.38342 * 13 12 11 15 15 C 1.36931 * 119.99788 * 155.00227 * 14 13 12 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00121 * 19 17 15 21 21 H 1.48501 * 109.47062 * 210.00072 * 19 17 15 22 22 H 1.48504 * 109.46913 * 329.99871 * 19 17 15 23 23 C 1.53045 * 109.53825 * 61.36664 * 13 12 11 24 24 C 1.46920 * 120.62930 * 359.97302 * 10 8 6 25 25 C 1.54625 * 101.76220 * 334.58315 * 6 5 4 26 26 C 1.34421 * 124.34777 * 299.97347 * 4 2 1 27 27 O 1.21272 * 124.94185 * 359.53508 * 26 4 2 28 28 H 1.08999 * 109.46774 * 299.99502 * 1 2 3 29 29 H 1.09002 * 109.47159 * 59.99504 * 1 2 3 30 30 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46710 * 240.00247 * 2 1 3 32 32 H 1.09000 * 109.47097 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47424 * 300.00333 * 3 2 1 34 34 H 1.08999 * 109.46805 * 60.00517 * 3 2 1 35 35 H 1.09005 * 110.24660 * 78.03670 * 5 4 2 36 36 H 1.08999 * 110.24992 * 316.04364 * 5 4 2 37 37 H 1.09007 * 109.58482 * 113.80056 * 11 10 8 38 38 H 1.08998 * 109.59242 * 353.37071 * 11 10 8 39 39 H 1.09000 * 109.49664 * 185.41723 * 12 11 10 40 40 H 1.09004 * 109.51858 * 65.33456 * 12 11 10 41 41 H 1.08991 * 109.46608 * 301.35544 * 13 12 11 42 42 H 0.97000 * 119.99792 * 335.00022 * 14 13 12 43 43 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.49596 * 58.57948 * 23 13 12 45 45 H 1.08994 * 109.49915 * 178.67709 * 23 13 12 46 46 H 1.09000 * 109.58989 * 246.19942 * 24 10 8 47 47 H 1.08996 * 109.59147 * 6.48708 * 24 10 8 48 48 H 1.09007 * 110.48723 * 143.48095 * 25 6 5 49 49 H 1.09004 * 110.49006 * 266.12016 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.8647 -1.8894 1.1725 6 6 2.7598 -2.4959 2.5894 7 1 1.9663 -3.2416 2.6375 8 6 4.0773 -3.0857 3.0226 9 8 5.0035 -3.1399 2.2414 10 7 4.2262 -3.5530 4.2780 11 6 5.5043 -4.1312 4.7147 12 6 5.2429 -5.5261 5.2917 13 6 4.1877 -5.4275 6.3957 14 7 3.9592 -6.7547 6.9724 15 6 3.4865 -6.8731 8.2521 16 1 3.2817 -5.9880 8.8362 17 6 3.2645 -8.1306 8.7964 18 7 3.5136 -9.2092 8.0845 19 14 2.6124 -8.2919 10.5395 20 1 1.1278 -8.3149 10.5124 21 1 3.1160 -9.5525 11.1417 22 1 3.0750 -7.1367 11.3499 23 6 2.8791 -4.8952 5.8070 24 6 3.1136 -3.4938 5.2356 25 6 2.4039 -1.2536 3.4385 26 6 1.7485 -0.3081 2.4561 27 8 1.0778 0.6552 2.7609 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.8975 -1.6178 0.9540 36 1 2.4953 -2.5976 0.4308 37 1 5.9497 -3.4965 5.4809 38 1 6.1803 -4.2089 3.8632 39 1 6.1674 -5.9272 5.7069 40 1 4.8826 -6.1853 4.5018 41 1 4.5381 -4.7491 7.1735 42 1 4.1427 -7.5496 6.4476 43 1 3.3588 -10.0879 8.4650 44 1 2.5409 -5.5600 5.0120 45 1 2.1212 -4.8475 6.5888 46 1 3.3636 -2.8070 6.0443 47 1 2.2128 -3.1484 4.7284 48 1 1.7072 -1.5214 4.2330 49 1 3.3057 -0.8054 3.8557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996654094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:17 Heat of formation + Delta-G solvation = -57.896373 kcal Electronic energy + Delta-G solvation = -28267.065448 eV Core-core repulsion = 24422.160374 eV Total energy + Delta-G solvation = -3844.905074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29075 -39.80907 -37.57982 -36.53915 -35.31731 -34.55878 -32.21701 -31.26474 -30.18243 -29.22058 -28.01604 -27.50632 -25.28531 -23.68248 -23.19609 -22.63419 -22.07760 -20.21832 -19.23759 -18.94368 -17.65135 -17.09014 -16.95466 -16.34830 -16.00336 -15.24629 -15.07457 -14.87596 -14.50007 -14.11404 -13.99856 -13.92091 -13.76749 -13.71764 -13.49960 -13.41012 -13.07521 -12.87166 -12.42960 -12.38966 -12.26813 -11.99521 -11.95928 -11.66620 -11.58126 -11.50527 -11.41634 -11.02093 -10.93350 -10.86042 -10.53791 -10.28251 -10.11571 -9.89480 -9.74524 -9.66534 -8.99997 -8.96194 -8.62256 -7.03747 -5.82755 -3.12270 2.32640 2.45463 2.58552 2.95056 3.39108 3.44609 3.46274 3.89677 4.01214 4.34050 4.49055 4.53111 4.62220 4.71375 4.76804 4.86896 4.97713 5.14565 5.23470 5.24551 5.26120 5.30217 5.30578 5.32590 5.42947 5.47064 5.47580 5.52979 5.59335 5.60968 5.65009 5.86360 5.86826 5.92132 5.93202 6.15238 6.27979 6.31003 6.33110 6.43417 6.52293 6.81388 6.83924 6.96367 7.36010 7.63471 7.91619 8.04136 8.35374 9.46787 10.03737 10.38151 11.39675 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.002511 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.468792 B =11146.101972 C =11783.225527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.617 5.617 5 C 0.119 3.881 6 C -0.123 4.123 7 H 0.120 0.880 8 C 0.527 3.473 9 O -0.544 6.544 10 N -0.599 5.599 11 C 0.116 3.884 12 C -0.139 4.139 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.152 4.152 24 C 0.101 3.899 25 C -0.148 4.148 26 C 0.522 3.478 27 O -0.527 6.527 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.114 0.886 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 17.477 -16.118 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.351 5.351 5 C -0.004 4.004 6 C -0.145 4.145 7 H 0.137 0.863 8 C 0.314 3.686 9 O -0.423 6.423 10 N -0.332 5.332 11 C -0.007 4.007 12 C -0.178 4.178 13 C 0.068 3.932 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.193 4.193 24 C -0.022 4.022 25 C -0.189 4.189 26 C 0.310 3.690 27 O -0.404 6.404 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.132 0.868 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.049 17.987 -16.235 24.317 hybrid contribution -0.433 -0.700 0.872 1.199 sum -2.482 17.286 -15.364 23.260 Atomic orbital electron populations 1.22189 0.94591 1.02477 1.03333 1.20952 0.94485 0.93153 0.86393 1.22187 1.01371 0.95739 1.03313 1.48501 1.51166 1.29238 1.06241 1.21982 0.96370 0.86196 0.95877 1.22216 0.97842 0.98263 0.96170 0.86256 1.19989 0.88850 0.78043 0.81725 1.90691 1.41968 1.57436 1.52167 1.48119 1.14262 1.59480 1.11298 1.21662 0.84707 0.94390 0.99908 1.22210 1.00916 0.95495 0.99178 1.20165 0.91130 0.89258 0.92616 1.42434 1.78513 1.01409 1.14075 1.19221 1.35771 0.92183 0.90040 0.91151 1.24757 1.02263 0.95472 0.98398 1.69660 1.54556 0.97079 1.36690 0.86209 0.78595 0.77061 0.84423 1.21713 1.21778 1.20733 1.22689 1.02073 0.93744 1.00822 1.22067 0.88592 0.99543 0.92037 1.22539 1.03501 0.94374 0.98444 1.20717 0.79676 0.84955 0.83663 1.90701 1.39589 1.28638 1.81452 0.90959 0.91443 0.92390 0.89332 0.92425 0.91456 0.90947 0.89135 0.89736 0.91393 0.89255 0.90477 0.91799 0.93371 0.78256 0.93462 0.92138 0.90500 0.91113 0.90161 0.86792 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.20 37.16 0.34 -0.96 16 2 C 0.15 1.19 3.47 -67.93 -0.24 0.95 16 3 C -0.17 -1.33 9.20 37.16 0.34 -0.99 16 4 N -0.62 -5.62 2.83 -164.84 -0.47 -6.09 16 5 C 0.12 1.00 6.62 -3.12 -0.02 0.98 16 6 C -0.12 -1.09 2.57 -90.14 -0.23 -1.32 16 7 H 0.12 0.92 7.83 -51.93 -0.41 0.51 16 8 C 0.53 6.26 7.01 -10.98 -0.08 6.18 16 9 O -0.54 -8.04 14.98 5.55 0.08 -7.96 16 10 N -0.60 -7.18 2.97 -172.79 -0.51 -7.70 16 11 C 0.12 1.49 6.43 -3.71 -0.02 1.46 16 12 C -0.14 -2.12 5.55 -26.61 -0.15 -2.27 16 13 C 0.18 3.18 2.73 -67.88 -0.19 3.00 16 14 N -0.72 -17.08 5.12 -53.38 -0.27 -17.35 16 15 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 19 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C -0.15 -2.31 5.66 -26.63 -0.15 -2.46 16 24 C 0.10 1.12 5.65 -3.73 -0.02 1.10 16 25 C -0.15 -1.30 5.16 -26.74 -0.14 -1.44 16 26 C 0.52 5.70 7.41 -10.86 -0.08 5.62 16 27 O -0.53 -7.41 15.12 5.56 0.08 -7.32 16 28 H 0.07 0.73 6.80 -51.93 -0.35 0.38 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.53 8.07 -51.92 -0.42 0.11 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 35 H 0.09 0.87 7.06 -51.93 -0.37 0.50 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 0.71 4.36 -51.93 -0.23 0.49 16 48 H 0.11 0.87 6.67 -51.93 -0.35 0.53 16 49 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -32.25 381.07 -8.69 -40.94 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.18 Total: 6.81 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.87 Total: 2.90 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.53 Total: -57.83 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.17 Total: -15.28 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.25 -8.69 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996654094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.952 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds