Wall clock time and date at job start Tue Mar 31 2020 14:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 N 1.46493 * 109.47468 * 120.00380 * 2 1 3 5 5 C 1.46763 * 124.35209 * 119.94716 * 4 2 1 6 6 C 1.54482 * 105.47607 * 197.04039 * 5 4 2 7 7 H 1.08996 * 111.00555 * 92.71880 * 6 5 4 8 8 C 1.50707 * 110.97113 * 216.46866 * 6 5 4 9 9 O 1.21285 * 119.99449 * 353.82849 * 8 6 5 10 10 N 1.34773 * 120.00047 * 173.83318 * 8 6 5 11 11 C 1.46923 * 120.62750 * 179.97438 * 10 8 6 12 12 C 1.53196 * 108.77455 * 233.58193 * 11 10 8 13 13 C 1.53038 * 109.31164 * 305.36559 * 12 11 10 14 14 N 1.46505 * 109.45776 * 181.38342 * 13 12 11 15 15 C 1.36931 * 119.99788 * 155.00227 * 14 13 12 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48498 * 109.47174 * 90.00121 * 19 17 15 21 21 H 1.48501 * 109.47062 * 210.00072 * 19 17 15 22 22 H 1.48504 * 109.46913 * 329.99871 * 19 17 15 23 23 C 1.53045 * 109.53825 * 61.36664 * 13 12 11 24 24 C 1.46920 * 120.62930 * 359.97302 * 10 8 6 25 25 C 1.54625 * 101.76220 * 334.58315 * 6 5 4 26 26 C 1.34421 * 124.34777 * 299.97347 * 4 2 1 27 27 O 1.21272 * 124.94185 * 359.53508 * 26 4 2 28 28 H 1.08999 * 109.46774 * 299.99502 * 1 2 3 29 29 H 1.09002 * 109.47159 * 59.99504 * 1 2 3 30 30 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46710 * 240.00247 * 2 1 3 32 32 H 1.09000 * 109.47097 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47424 * 300.00333 * 3 2 1 34 34 H 1.08999 * 109.46805 * 60.00517 * 3 2 1 35 35 H 1.09005 * 110.24660 * 78.03670 * 5 4 2 36 36 H 1.08999 * 110.24992 * 316.04364 * 5 4 2 37 37 H 1.09007 * 109.58482 * 113.80056 * 11 10 8 38 38 H 1.08998 * 109.59242 * 353.37071 * 11 10 8 39 39 H 1.09000 * 109.49664 * 185.41723 * 12 11 10 40 40 H 1.09004 * 109.51858 * 65.33456 * 12 11 10 41 41 H 1.08991 * 109.46608 * 301.35544 * 13 12 11 42 42 H 0.97000 * 119.99792 * 335.00022 * 14 13 12 43 43 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.49596 * 58.57948 * 23 13 12 45 45 H 1.08994 * 109.49915 * 178.67709 * 23 13 12 46 46 H 1.09000 * 109.58989 * 246.19942 * 24 10 8 47 47 H 1.08996 * 109.59147 * 6.48708 * 24 10 8 48 48 H 1.09007 * 110.48723 * 143.48095 * 25 6 5 49 49 H 1.09004 * 110.49006 * 266.12016 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.8647 -1.8894 1.1725 6 6 2.7598 -2.4959 2.5894 7 1 1.9663 -3.2416 2.6375 8 6 4.0773 -3.0857 3.0226 9 8 5.0035 -3.1399 2.2414 10 7 4.2262 -3.5530 4.2780 11 6 5.5043 -4.1312 4.7147 12 6 5.2429 -5.5261 5.2917 13 6 4.1877 -5.4275 6.3957 14 7 3.9592 -6.7547 6.9724 15 6 3.4865 -6.8731 8.2521 16 1 3.2817 -5.9880 8.8362 17 6 3.2645 -8.1306 8.7964 18 7 3.5136 -9.2092 8.0845 19 14 2.6124 -8.2919 10.5395 20 1 1.1278 -8.3149 10.5124 21 1 3.1160 -9.5525 11.1417 22 1 3.0750 -7.1367 11.3499 23 6 2.8791 -4.8952 5.8070 24 6 3.1136 -3.4938 5.2356 25 6 2.4039 -1.2536 3.4385 26 6 1.7485 -0.3081 2.4561 27 8 1.0778 0.6552 2.7609 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.8975 -1.6178 0.9540 36 1 2.4953 -2.5976 0.4308 37 1 5.9497 -3.4965 5.4809 38 1 6.1803 -4.2089 3.8632 39 1 6.1674 -5.9272 5.7069 40 1 4.8826 -6.1853 4.5018 41 1 4.5381 -4.7491 7.1735 42 1 4.1427 -7.5496 6.4476 43 1 3.3588 -10.0879 8.4650 44 1 2.5409 -5.5600 5.0120 45 1 2.1212 -4.8475 6.5888 46 1 3.3636 -2.8070 6.0443 47 1 2.2128 -3.1484 4.7284 48 1 1.7072 -1.5214 4.2330 49 1 3.3057 -0.8054 3.8557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996654094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:16 Heat of formation + Delta-G solvation = -78.473421 kcal Electronic energy + Delta-G solvation = -28267.957736 eV Core-core repulsion = 24422.160374 eV Total energy + Delta-G solvation = -3845.797362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11797 -40.75994 -38.78267 -37.39914 -36.21366 -35.92289 -33.82994 -32.36949 -31.22689 -30.66837 -28.77177 -28.11897 -26.71961 -24.97431 -24.37576 -23.38259 -23.24098 -21.44386 -20.08106 -19.91673 -19.07115 -18.46469 -17.66878 -17.30120 -16.86626 -16.66504 -16.16333 -15.92491 -15.49983 -15.38509 -15.22032 -14.93483 -14.79367 -14.71229 -14.63394 -14.46722 -14.10057 -13.69020 -13.62272 -13.28087 -13.09287 -13.01656 -12.93892 -12.82134 -12.70812 -12.46951 -12.35611 -12.20253 -12.16014 -12.11864 -12.06678 -11.95818 -11.66261 -11.27114 -11.04714 -10.87490 -10.55230 -9.74543 -9.65791 -8.98158 -7.91802 -5.19870 1.49508 1.50216 1.50260 1.55055 1.58538 1.82041 2.08818 2.58178 3.11100 3.29884 3.41944 3.56324 3.80775 3.86523 3.88750 3.99811 4.08642 4.11708 4.12931 4.23031 4.29465 4.38591 4.45268 4.52255 4.57425 4.65262 4.67711 4.72389 4.79046 4.84494 4.87307 4.88831 4.89430 4.90958 4.93850 5.06819 5.12072 5.22519 5.30346 5.34619 5.51977 5.56774 5.65202 5.66631 6.11005 6.30248 6.40171 7.08095 7.14312 7.36476 8.13343 8.35153 9.31823 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.002511 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.468792 B =11146.101972 C =11783.225527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 C -0.163 4.163 4 N -0.612 5.612 5 C 0.121 3.879 6 C -0.115 4.115 7 H 0.140 0.860 8 C 0.529 3.471 9 O -0.574 6.574 10 N -0.601 5.601 11 C 0.123 3.877 12 C -0.128 4.128 13 C 0.171 3.829 14 N -0.739 5.739 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.968 3.032 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.268 1.268 23 C -0.142 4.142 24 C 0.110 3.890 25 C -0.142 4.142 26 C 0.515 3.485 27 O -0.565 6.565 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.110 0.890 48 H 0.130 0.870 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 18.996 -16.811 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.221 4.221 4 N -0.346 5.346 5 C -0.002 4.002 6 C -0.136 4.136 7 H 0.157 0.843 8 C 0.317 3.683 9 O -0.454 6.454 10 N -0.333 5.333 11 C 0.000 4.000 12 C -0.167 4.167 13 C 0.063 3.937 14 N -0.378 5.378 15 C -0.364 4.364 16 H 0.097 0.903 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.798 3.202 20 H -0.216 1.216 21 H -0.228 1.228 22 H -0.193 1.193 23 C -0.183 4.183 24 C -0.013 4.013 25 C -0.182 4.182 26 C 0.303 3.697 27 O -0.445 6.445 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.128 0.872 48 H 0.148 0.852 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.610 19.563 -16.950 26.016 hybrid contribution -0.201 -1.106 1.000 1.504 sum -2.811 18.457 -15.950 24.556 Atomic orbital electron populations 1.22131 0.94488 1.02512 1.02861 1.21184 0.94608 0.93186 0.86773 1.22141 1.01163 0.95924 1.02916 1.48621 1.50513 1.29212 1.06253 1.22004 0.95812 0.86173 0.96164 1.22193 0.96502 0.98563 0.96346 0.84277 1.20409 0.89438 0.77370 0.81050 1.90687 1.43258 1.58578 1.52830 1.48158 1.14059 1.59363 1.11680 1.21531 0.85352 0.92993 1.00093 1.22057 0.99637 0.97082 0.97911 1.20449 0.93245 0.86673 0.93322 1.42679 1.78503 1.03171 1.13454 1.19620 1.33485 0.92233 0.91025 0.90286 1.25527 1.03973 0.95477 1.02118 1.69818 1.56968 0.97205 1.38303 0.85205 0.77778 0.76800 0.80395 1.21573 1.22752 1.19300 1.22458 0.99704 0.96061 1.00095 1.22074 0.89592 0.96981 0.92617 1.22541 1.03735 0.93653 0.98314 1.21066 0.79304 0.84737 0.84569 1.90688 1.41378 1.30302 1.82101 0.93689 0.89628 0.92048 0.86865 0.92608 0.89513 0.93658 0.90156 0.87788 0.89789 0.89503 0.91202 0.93007 0.93344 0.79868 0.94249 0.93272 0.91619 0.89370 0.87189 0.85224 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.20 71.98 0.66 -1.57 16 2 C 0.14 1.95 3.47 44.99 0.16 2.11 16 3 C -0.16 -2.39 9.20 71.98 0.66 -1.73 16 4 N -0.61 -9.94 2.83 -794.04 -2.25 -12.19 16 5 C 0.12 1.73 6.62 86.83 0.57 2.30 16 6 C -0.11 -1.68 2.57 -10.48 -0.03 -1.71 16 7 H 0.14 1.57 7.83 -2.39 -0.02 1.56 16 8 C 0.53 11.21 7.01 87.66 0.61 11.83 16 9 O -0.57 -15.89 14.98 -3.04 -0.05 -15.93 16 10 N -0.60 -12.84 2.97 -818.98 -2.43 -15.28 16 11 C 0.12 2.94 6.43 86.36 0.56 3.49 16 12 C -0.13 -3.82 5.55 30.67 0.17 -3.65 16 13 C 0.17 5.95 2.73 45.02 0.12 6.08 16 14 N -0.74 -35.03 5.12 -322.81 -1.65 -36.69 16 15 C -0.23 -12.18 9.93 84.04 0.83 -11.35 16 16 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 18 N -0.97 -58.44 13.06 21.65 0.28 -58.16 16 19 Si 0.97 44.91 29.55 68.60 2.03 46.93 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 C -0.14 -4.08 5.66 30.66 0.17 -3.91 16 24 C 0.11 2.09 5.65 86.35 0.49 2.58 16 25 C -0.14 -2.10 5.16 30.59 0.16 -1.95 16 26 C 0.51 10.44 7.41 87.90 0.65 11.09 16 27 O -0.57 -15.65 15.12 -3.01 -0.05 -15.70 16 28 H 0.04 0.88 6.80 -2.39 -0.02 0.87 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 1.01 8.07 -2.38 -0.02 0.99 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.92 6.77 -2.39 -0.02 0.91 16 35 H 0.08 1.37 7.06 -2.38 -0.02 1.36 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.09 2.18 7.01 -2.39 -0.02 2.16 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 42 H 0.37 19.33 7.80 -92.71 -0.72 18.61 16 43 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 44 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.11 1.50 4.36 -2.39 -0.01 1.49 16 48 H 0.13 1.52 6.67 -2.38 -0.02 1.50 16 49 H 0.11 1.65 7.89 -2.38 -0.02 1.63 16 Total: -1.00 -71.28 381.07 2.37 -68.91 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.22 Total: 28.40 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 6.26 Total: 9.69 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -6.05 Total: -122.31 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.09 Total: -31.63 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.28 2.37 -68.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996654094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.563 kcal (2) G-P(sol) polarization free energy of solvation -71.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds