Wall clock time and date at job start Tue Mar 31 2020 13:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47217 * 2 1 4 4 H 1.09002 * 109.12199 * 305.51917 * 3 2 1 5 5 C 1.52918 * 109.29999 * 186.03802 * 3 2 1 6 6 C 1.53347 * 108.67079 * 188.93375 * 5 3 2 7 7 H 1.09000 * 109.67315 * 307.76061 * 6 5 3 8 8 C 1.50695 * 109.67221 * 187.26222 * 6 5 3 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00095 * 179.97438 * 8 6 5 11 11 C 1.46501 * 119.99994 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47046 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.84580 * 314.66656 * 12 11 10 14 14 C 1.53779 * 113.61604 * 85.86220 * 12 11 10 15 15 C 1.53955 * 87.01980 * 139.95303 * 14 12 11 16 16 H 1.09004 * 113.61236 * 89.19742 * 15 14 12 17 17 N 1.46491 * 113.66718 * 220.06795 * 15 14 12 18 18 C 1.36939 * 119.99707 * 252.55987 * 17 15 14 19 19 H 1.07996 * 120.00421 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99500 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99737 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00240 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.47128 * 89.99941 * 22 20 18 24 24 H 1.48507 * 109.47126 * 209.99483 * 22 20 18 25 25 H 1.48494 * 109.47150 * 330.00080 * 22 20 18 26 26 C 1.53771 * 113.61674 * 183.47266 * 12 11 10 27 27 C 1.53074 * 108.42571 * 67.52812 * 6 5 3 28 28 C 1.50192 * 109.83408 * 310.88771 * 27 6 5 29 29 O 1.21280 * 118.26110 * 197.78916 * 28 27 6 30 30 N 1.33356 * 123.49312 * 18.07419 * 28 27 6 31 31 H 1.08994 * 109.47123 * 60.00058 * 1 2 3 32 32 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46961 * 299.99927 * 1 2 3 34 34 H 1.08998 * 109.47154 * 239.99555 * 2 1 3 35 35 H 1.09007 * 109.47190 * 119.99661 * 2 1 3 36 36 H 1.09004 * 109.60365 * 308.68732 * 5 3 2 37 37 H 1.08997 * 109.60591 * 69.17550 * 5 3 2 38 38 H 0.96996 * 119.99526 * 359.97438 * 10 8 6 39 39 H 1.08998 * 109.47004 * 300.00057 * 11 10 8 40 40 H 1.09000 * 109.46858 * 60.00084 * 11 10 8 41 41 H 1.09002 * 113.61182 * 254.52869 * 14 12 11 42 42 H 1.08992 * 113.61502 * 25.42942 * 14 12 11 43 43 H 0.96998 * 120.00186 * 72.55412 * 17 15 14 44 44 H 0.96998 * 120.00145 * 180.02562 * 21 20 18 45 45 H 1.09004 * 113.61374 * 334.56797 * 26 12 11 46 46 H 1.08999 * 113.62065 * 105.37769 * 26 12 11 47 47 H 1.09003 * 109.39935 * 71.22591 * 27 6 5 48 48 H 1.08997 * 109.39791 * 191.05352 * 27 6 5 49 49 H 0.97001 * 117.94942 * 177.50203 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5950 1.9787 -0.8382 5 6 3.5617 1.4406 -0.1518 6 6 4.0793 2.8664 0.0737 7 1 3.5359 3.5599 -0.5680 8 6 5.5510 2.9280 -0.2444 9 8 6.1334 1.9312 -0.6162 10 7 6.2200 4.0911 -0.1168 11 6 7.6506 4.1511 -0.4266 12 6 8.1622 5.5751 -0.2000 13 1 7.5021 6.3339 -0.6203 14 6 8.5773 5.8566 1.2537 15 6 9.7670 6.6452 0.6767 16 1 9.5472 7.6976 0.4969 17 7 11.0184 6.4427 1.4109 18 6 11.5168 7.4424 2.2030 19 1 10.9877 8.3802 2.2861 20 6 12.7024 7.2503 2.8991 21 7 13.1818 8.2113 3.6601 22 14 13.6180 5.6286 2.7549 23 1 14.5819 5.7028 1.6276 24 1 14.3527 5.3609 4.0174 25 1 12.6476 4.5327 2.5050 26 6 9.6402 5.7663 -0.5788 27 6 3.8534 3.2366 1.5417 28 6 2.4399 2.9170 1.9362 29 8 1.9923 3.4340 2.9378 30 7 1.6525 2.0905 1.2467 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 4.0021 0.7706 0.5867 37 1 3.8287 1.1090 -1.1552 38 1 5.7540 4.8885 0.1795 39 1 8.1921 3.4632 0.2228 40 1 7.8091 3.8690 -1.4674 41 1 7.8651 6.4758 1.7991 42 1 8.8716 4.9633 1.8045 43 1 11.4938 5.6006 1.3361 44 1 14.0104 8.0773 4.1462 45 1 10.2258 4.8482 -0.5301 46 1 9.7850 6.3114 -1.5116 47 1 4.5444 2.6721 2.1679 48 1 4.0308 4.3034 1.6774 49 1 0.7646 1.9126 1.5946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086157626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:52 Heat of formation + Delta-G solvation = -60.561157 kcal Electronic energy + Delta-G solvation = -27117.217920 eV Core-core repulsion = 23272.197292 eV Total energy + Delta-G solvation = -3845.020628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.18623 -39.76818 -38.64734 -37.43999 -34.89262 -34.40918 -33.32193 -32.52324 -30.78377 -29.56684 -27.89266 -25.81507 -25.24125 -24.01779 -23.17681 -22.28111 -21.04256 -20.54356 -19.75453 -19.29920 -17.85742 -17.46091 -17.21347 -16.81464 -16.23743 -15.75753 -15.47332 -15.07351 -14.90940 -14.63676 -14.38471 -14.24919 -14.09687 -13.97869 -13.77996 -13.31804 -13.09156 -12.69154 -12.50513 -12.25317 -12.01809 -11.96478 -11.85147 -11.66787 -11.64435 -11.56904 -11.51214 -11.35254 -10.91922 -10.62135 -10.50983 -10.28824 -10.17775 -9.88868 -9.76535 -9.56304 -9.53444 -9.18858 -8.91862 -7.29149 -5.80129 -3.15831 2.24070 2.35806 2.81404 2.90504 3.36074 3.38981 3.44141 3.92644 4.04498 4.11474 4.23147 4.47964 4.50878 4.56483 4.57562 4.73769 4.81807 4.83317 4.90621 4.98044 5.06017 5.07450 5.22646 5.25612 5.34854 5.39021 5.40093 5.41494 5.55145 5.60069 5.62078 5.67551 5.72755 5.76932 5.79903 6.12019 6.13840 6.18765 6.30400 6.34416 6.46766 6.64342 6.89773 6.94447 7.27793 7.80396 7.96125 7.97637 8.39614 9.17334 9.90057 10.09614 11.38022 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.002102 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.221714 B =13318.052139 C =13718.212421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.139 3.861 4 H 0.078 0.922 5 C -0.112 4.112 6 C -0.112 4.112 7 H 0.106 0.894 8 C 0.517 3.483 9 O -0.538 6.538 10 N -0.722 5.722 11 C 0.131 3.869 12 C -0.127 4.127 13 H 0.091 0.909 14 C -0.162 4.162 15 C 0.172 3.828 16 H 0.084 0.916 17 N -0.737 5.737 18 C -0.249 4.249 19 H 0.091 0.909 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.145 4.145 27 C -0.128 4.128 28 C 0.524 3.476 29 O -0.553 6.553 30 N -0.716 5.716 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.463 -15.168 -12.425 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.150 4.150 6 C -0.133 4.133 7 H 0.124 0.876 8 C 0.302 3.698 9 O -0.415 6.415 10 N -0.373 5.373 11 C 0.008 3.992 12 C -0.146 4.146 13 H 0.109 0.891 14 C -0.202 4.202 15 C 0.060 3.940 16 H 0.102 0.898 17 N -0.376 5.376 18 C -0.379 4.379 19 H 0.109 0.891 20 C -0.191 4.191 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.185 4.185 27 C -0.168 4.168 28 C 0.311 3.689 29 O -0.431 6.431 30 N -0.369 5.369 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.236 0.764 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.126 0.874 48 H 0.127 0.873 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -25.924 -15.325 -12.114 32.460 hybrid contribution 0.199 -0.850 0.217 0.900 sum -25.725 -16.175 -11.897 32.634 Atomic orbital electron populations 1.21813 0.95294 1.02366 1.01913 1.21928 0.96502 0.95331 1.03726 1.21091 0.95389 0.93807 0.86320 0.90364 1.21785 0.92845 0.95239 1.05147 1.21466 0.94184 1.00079 0.97598 0.87628 1.20341 0.88612 0.83305 0.77547 1.90724 1.69691 1.34736 1.46350 1.46075 1.11097 1.11694 1.68450 1.21455 0.79475 0.97440 1.00842 1.22641 0.97277 0.94972 0.99748 0.89073 1.23947 1.00584 1.01702 0.94017 1.21534 0.85941 0.96759 0.89732 0.89792 1.42756 1.24302 1.16019 1.54552 1.19137 1.04576 0.95102 1.19077 0.89129 1.24703 0.97845 0.97331 0.99238 1.69701 1.22528 1.32219 1.33514 0.86554 0.80089 0.84614 0.77283 1.21025 1.21695 1.20309 1.23461 0.93874 1.01194 0.99964 1.21679 0.94363 1.05143 0.95610 1.19993 0.87895 0.78041 0.82951 1.90800 1.74379 1.51583 1.26313 1.45709 1.18622 1.47213 1.25399 0.92259 0.92070 0.92771 0.89981 0.90940 0.89965 0.88582 0.76422 0.91252 0.91635 0.92222 0.90465 0.80456 0.93016 0.90361 0.91603 0.87380 0.87334 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 9.76 37.16 0.36 -0.13 16 2 C -0.14 -0.50 5.57 -26.73 -0.15 -0.65 16 3 C 0.14 0.62 3.07 -68.37 -0.21 0.41 16 4 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 5 C -0.11 -0.67 3.99 -26.59 -0.11 -0.78 16 6 C -0.11 -0.73 2.60 -91.56 -0.24 -0.97 16 7 H 0.11 0.50 8.13 -51.93 -0.42 0.07 16 8 C 0.52 5.06 7.13 -10.99 -0.08 4.98 16 9 O -0.54 -7.35 15.90 5.55 0.09 -7.26 16 10 N -0.72 -6.55 5.47 -60.29 -0.33 -6.88 16 11 C 0.13 1.46 5.50 -4.04 -0.02 1.44 16 12 C -0.13 -1.47 3.75 -89.81 -0.34 -1.81 16 13 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 14 C -0.16 -2.42 7.45 -25.83 -0.19 -2.61 16 15 C 0.17 3.08 4.48 -67.03 -0.30 2.78 16 16 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 17 N -0.74 -16.99 5.21 -52.55 -0.27 -17.27 16 18 C -0.25 -6.93 10.45 -15.06 -0.16 -7.08 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 21 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 22 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 26 C -0.15 -2.05 7.40 -25.92 -0.19 -2.24 16 27 C -0.13 -0.95 5.22 -28.09 -0.15 -1.09 16 28 C 0.52 4.82 7.71 -11.86 -0.09 4.73 16 29 O -0.55 -7.56 17.78 5.56 0.10 -7.46 16 30 N -0.72 -4.57 5.12 -54.84 -0.28 -4.85 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.18 6.67 -51.93 -0.35 -0.17 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 37 H 0.10 0.58 7.90 -51.93 -0.41 0.17 16 38 H 0.40 2.75 8.25 -40.82 -0.34 2.41 16 39 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.27 7.92 -51.93 -0.41 0.85 16 43 H 0.36 8.26 5.78 -40.82 -0.24 8.03 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.11 0.87 8.09 -51.93 -0.42 0.45 16 48 H 0.11 0.72 7.98 -51.93 -0.41 0.30 16 49 H 0.40 2.36 7.04 -40.82 -0.29 2.07 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -35.42 391.05 -9.05 -44.47 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.35 Total: 7.39 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.95 Total: -2.98 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.11 Total: -57.36 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.19 Total: -14.72 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.42 -9.05 -44.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086157626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.096 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds