Wall clock time and date at job start Tue Mar 31 2020 13:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47217 * 2 1 4 4 H 1.09002 * 109.12199 * 305.51917 * 3 2 1 5 5 C 1.52918 * 109.29999 * 186.03802 * 3 2 1 6 6 C 1.53347 * 108.67079 * 188.93375 * 5 3 2 7 7 H 1.09000 * 109.67315 * 307.76061 * 6 5 3 8 8 C 1.50695 * 109.67221 * 187.26222 * 6 5 3 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 6 5 10 10 N 1.34780 * 120.00095 * 179.97438 * 8 6 5 11 11 C 1.46501 * 119.99994 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47046 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.84580 * 314.66656 * 12 11 10 14 14 C 1.53779 * 113.61604 * 85.86220 * 12 11 10 15 15 C 1.53955 * 87.01980 * 139.95303 * 14 12 11 16 16 H 1.09004 * 113.61236 * 89.19742 * 15 14 12 17 17 N 1.46491 * 113.66718 * 220.06795 * 15 14 12 18 18 C 1.36939 * 119.99707 * 252.55987 * 17 15 14 19 19 H 1.07996 * 120.00421 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99500 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99737 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00240 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.47128 * 89.99941 * 22 20 18 24 24 H 1.48507 * 109.47126 * 209.99483 * 22 20 18 25 25 H 1.48494 * 109.47150 * 330.00080 * 22 20 18 26 26 C 1.53771 * 113.61674 * 183.47266 * 12 11 10 27 27 C 1.53074 * 108.42571 * 67.52812 * 6 5 3 28 28 C 1.50192 * 109.83408 * 310.88771 * 27 6 5 29 29 O 1.21280 * 118.26110 * 197.78916 * 28 27 6 30 30 N 1.33356 * 123.49312 * 18.07419 * 28 27 6 31 31 H 1.08994 * 109.47123 * 60.00058 * 1 2 3 32 32 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46961 * 299.99927 * 1 2 3 34 34 H 1.08998 * 109.47154 * 239.99555 * 2 1 3 35 35 H 1.09007 * 109.47190 * 119.99661 * 2 1 3 36 36 H 1.09004 * 109.60365 * 308.68732 * 5 3 2 37 37 H 1.08997 * 109.60591 * 69.17550 * 5 3 2 38 38 H 0.96996 * 119.99526 * 359.97438 * 10 8 6 39 39 H 1.08998 * 109.47004 * 300.00057 * 11 10 8 40 40 H 1.09000 * 109.46858 * 60.00084 * 11 10 8 41 41 H 1.09002 * 113.61182 * 254.52869 * 14 12 11 42 42 H 1.08992 * 113.61502 * 25.42942 * 14 12 11 43 43 H 0.96998 * 120.00186 * 72.55412 * 17 15 14 44 44 H 0.96998 * 120.00145 * 180.02562 * 21 20 18 45 45 H 1.09004 * 113.61374 * 334.56797 * 26 12 11 46 46 H 1.08999 * 113.62065 * 105.37769 * 26 12 11 47 47 H 1.09003 * 109.39935 * 71.22591 * 27 6 5 48 48 H 1.08997 * 109.39791 * 191.05352 * 27 6 5 49 49 H 0.97001 * 117.94942 * 177.50203 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5950 1.9787 -0.8382 5 6 3.5617 1.4406 -0.1518 6 6 4.0793 2.8664 0.0737 7 1 3.5359 3.5599 -0.5680 8 6 5.5510 2.9280 -0.2444 9 8 6.1334 1.9312 -0.6162 10 7 6.2200 4.0911 -0.1168 11 6 7.6506 4.1511 -0.4266 12 6 8.1622 5.5751 -0.2000 13 1 7.5021 6.3339 -0.6203 14 6 8.5773 5.8566 1.2537 15 6 9.7670 6.6452 0.6767 16 1 9.5472 7.6976 0.4969 17 7 11.0184 6.4427 1.4109 18 6 11.5168 7.4424 2.2030 19 1 10.9877 8.3802 2.2861 20 6 12.7024 7.2503 2.8991 21 7 13.1818 8.2113 3.6601 22 14 13.6180 5.6286 2.7549 23 1 14.5819 5.7028 1.6276 24 1 14.3527 5.3609 4.0174 25 1 12.6476 4.5327 2.5050 26 6 9.6402 5.7663 -0.5788 27 6 3.8534 3.2366 1.5417 28 6 2.4399 2.9170 1.9362 29 8 1.9923 3.4340 2.9378 30 7 1.6525 2.0905 1.2467 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 4.0021 0.7706 0.5867 37 1 3.8287 1.1090 -1.1552 38 1 5.7540 4.8885 0.1795 39 1 8.1921 3.4632 0.2228 40 1 7.8091 3.8690 -1.4674 41 1 7.8651 6.4758 1.7991 42 1 8.8716 4.9633 1.8045 43 1 11.4938 5.6006 1.3361 44 1 14.0104 8.0773 4.1462 45 1 10.2258 4.8482 -0.5301 46 1 9.7850 6.3114 -1.5116 47 1 4.5444 2.6721 2.1679 48 1 4.0308 4.3034 1.6774 49 1 0.7646 1.9126 1.5946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086157626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:51 Heat of formation + Delta-G solvation = -86.994878 kcal Electronic energy + Delta-G solvation = -27118.364172 eV Core-core repulsion = 23272.197292 eV Total energy + Delta-G solvation = -3846.166880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.84608 -40.64477 -39.80124 -38.07495 -36.11373 -35.18213 -34.75048 -33.04954 -32.71749 -30.08364 -28.96272 -26.51404 -26.44724 -25.48185 -24.05353 -22.73246 -22.32387 -21.42107 -20.66108 -20.25392 -19.34451 -18.48239 -17.94504 -17.50701 -17.09409 -16.64082 -16.45176 -16.25596 -15.97319 -15.75761 -15.40676 -15.04695 -14.77687 -14.73857 -14.62813 -14.35723 -14.11444 -13.96314 -13.76819 -13.23953 -13.17263 -13.03697 -12.97307 -12.69473 -12.36542 -12.33022 -12.13721 -12.10162 -11.91784 -11.85871 -11.76872 -11.68306 -11.58858 -11.32229 -11.08902 -10.87643 -10.58154 -10.11149 -10.04055 -9.25935 -8.02813 -5.34960 1.37090 1.39845 1.47052 1.53213 1.60164 2.16644 2.25899 2.47702 3.27493 3.37188 3.52118 3.59450 3.61355 3.70789 3.75114 3.85602 4.03490 4.09274 4.11849 4.19424 4.28616 4.33261 4.41012 4.49836 4.55236 4.58054 4.66542 4.74981 4.81532 4.86298 4.96849 4.97303 4.99631 5.06182 5.16322 5.17039 5.24032 5.27695 5.35814 5.42564 5.47202 5.67956 5.78583 5.79704 6.23269 6.29820 6.56309 7.08328 7.15110 7.24424 7.87042 8.04285 9.18733 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.002102 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.221714 B =13318.052139 C =13718.212421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.143 3.857 4 H 0.102 0.898 5 C -0.111 4.111 6 C -0.099 4.099 7 H 0.135 0.865 8 C 0.517 3.483 9 O -0.578 6.578 10 N -0.714 5.714 11 C 0.137 3.863 12 C -0.096 4.096 13 H 0.120 0.880 14 C -0.156 4.156 15 C 0.143 3.857 16 H 0.077 0.923 17 N -0.744 5.744 18 C -0.231 4.231 19 H 0.059 0.941 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.298 1.298 25 H -0.254 1.254 26 C -0.135 4.135 27 C -0.124 4.124 28 C 0.524 3.476 29 O -0.605 6.605 30 N -0.705 5.705 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.415 0.585 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.365 0.635 44 H 0.257 0.743 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.119 0.881 49 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.360 -16.705 -14.847 36.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.119 0.881 5 C -0.149 4.149 6 C -0.120 4.120 7 H 0.152 0.848 8 C 0.304 3.696 9 O -0.458 6.458 10 N -0.366 5.366 11 C 0.013 3.987 12 C -0.115 4.115 13 H 0.138 0.862 14 C -0.197 4.197 15 C 0.034 3.966 16 H 0.095 0.905 17 N -0.385 5.385 18 C -0.362 4.362 19 H 0.077 0.923 20 C -0.259 4.259 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.179 1.179 26 C -0.175 4.175 27 C -0.164 4.164 28 C 0.311 3.689 29 O -0.487 6.487 30 N -0.356 5.356 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.252 0.748 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.198 0.802 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.117 0.883 48 H 0.137 0.863 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -27.902 -16.890 -14.609 35.738 hybrid contribution 0.693 -0.338 0.917 1.198 sum -27.209 -17.229 -13.693 34.995 Atomic orbital electron populations 1.21816 0.94751 1.02603 1.02192 1.21907 0.96897 0.94607 1.03773 1.21231 0.94522 0.94520 0.85866 0.88065 1.21775 0.93652 0.94588 1.04893 1.21434 0.92122 1.01155 0.97319 0.84752 1.20813 0.89641 0.82619 0.76496 1.90714 1.70727 1.36101 1.48249 1.45980 1.10313 1.12298 1.67976 1.21243 0.80471 0.96326 1.00656 1.22467 0.96374 0.96163 0.96530 0.86194 1.23766 0.99189 1.00500 0.96198 1.21993 0.84885 0.97694 0.91983 0.90481 1.42791 1.26096 1.14935 1.54693 1.19136 1.03772 0.94912 1.18411 0.92303 1.25520 0.99340 1.01236 0.99764 1.69883 1.23285 1.34803 1.35521 0.85420 0.78892 0.80664 0.76845 1.20362 1.22491 1.17896 1.23344 0.95492 1.00134 0.98505 1.21634 0.93048 1.05695 0.95994 1.20235 0.88467 0.77805 0.82352 1.90780 1.75434 1.53865 1.28607 1.45732 1.18404 1.45947 1.25551 0.91423 0.91936 0.93032 0.88924 0.91986 0.91519 0.88181 0.74827 0.93217 0.91176 0.91678 0.91852 0.80205 0.93445 0.90551 0.89930 0.88257 0.86312 0.76072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.76 71.98 0.70 0.05 16 2 C -0.13 -0.70 5.57 30.60 0.17 -0.53 16 3 C 0.14 0.91 3.07 45.11 0.14 1.05 16 4 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 5 C -0.11 -1.09 3.99 30.68 0.12 -0.97 16 6 C -0.10 -1.03 2.60 -11.40 -0.03 -1.06 16 7 H 0.13 0.69 8.13 -2.39 -0.02 0.68 16 8 C 0.52 8.92 7.13 87.65 0.62 9.55 16 9 O -0.58 -14.90 15.90 -3.04 -0.05 -14.95 16 10 N -0.71 -10.87 5.47 -463.05 -2.53 -13.40 16 11 C 0.14 2.68 5.50 86.38 0.48 3.15 16 12 C -0.10 -1.93 3.75 -10.27 -0.04 -1.96 16 13 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 14 C -0.16 -4.40 7.45 31.18 0.23 -4.17 16 15 C 0.14 4.96 4.48 45.58 0.20 5.16 16 16 H 0.08 2.75 8.10 -2.39 -0.02 2.73 16 17 N -0.74 -33.93 5.21 -320.18 -1.67 -35.60 16 18 C -0.23 -13.09 10.45 84.03 0.88 -12.21 16 19 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.98 -63.43 13.97 21.65 0.30 -63.13 16 22 Si 0.95 45.88 27.74 68.60 1.90 47.78 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 25 H -0.25 -11.10 6.52 99.48 0.65 -10.45 16 26 C -0.14 -3.45 7.40 31.12 0.23 -3.22 16 27 C -0.12 -1.62 5.22 29.71 0.16 -1.47 16 28 C 0.52 9.05 7.71 87.72 0.68 9.73 16 29 O -0.60 -16.45 17.78 -3.03 -0.05 -16.51 16 30 N -0.70 -7.80 5.12 -446.61 -2.29 -10.09 16 31 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.05 0.25 6.67 -2.39 -0.02 0.23 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.07 0.88 8.11 -2.38 -0.02 0.86 16 37 H 0.10 0.97 7.90 -2.39 -0.02 0.95 16 38 H 0.41 4.17 8.25 -92.71 -0.76 3.41 16 39 H 0.05 1.20 7.87 -2.39 -0.02 1.18 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.99 7.92 -2.39 -0.02 1.97 16 43 H 0.36 16.13 5.78 -92.71 -0.54 15.59 16 44 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 45 H 0.08 2.02 8.08 -2.38 -0.02 2.00 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 48 H 0.12 1.31 7.98 -2.39 -0.02 1.29 16 49 H 0.40 4.19 7.04 -92.71 -0.65 3.54 16 Total: -1.00 -79.72 391.05 -0.43 -80.14 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -1.05 Total: 26.16 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.01 Total: -0.42 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -6.19 Total: -122.22 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.10 Total: -31.45 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Total: -79.72 -0.43 -80.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086157626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.853 kcal (2) G-P(sol) polarization free energy of solvation -79.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds