Wall clock time and date at job start Tue Mar 31 2020 13:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 H 1.08996 * 109.47288 * 305.80160 * 3 2 1 5 5 N 1.46504 * 109.46759 * 65.80457 * 3 2 1 6 6 C 1.34776 * 119.99974 * 274.99057 * 5 3 2 7 7 C 1.50695 * 120.00102 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99712 * 0.02562 * 6 5 3 9 9 C 1.50701 * 109.47168 * 185.80070 * 3 2 1 10 10 O 1.21281 * 120.00016 * 259.69777 * 9 3 2 11 11 N 1.34780 * 119.99868 * 79.69450 * 9 3 2 12 12 C 1.47154 * 121.21863 * 4.85360 * 11 9 3 13 13 C 1.52834 * 107.97907 * 122.70136 * 12 11 9 14 14 C 1.53088 * 110.58654 * 57.33912 * 13 12 11 15 15 H 1.09000 * 112.48855 * 71.38744 * 14 13 12 16 16 C 1.56022 * 106.39120 * 195.45066 * 14 13 12 17 17 C 1.54505 * 102.61607 * 78.38607 * 16 14 13 18 18 N 1.47436 * 107.14514 * 22.85038 * 17 16 14 19 19 C 1.36932 * 126.05495 * 181.64774 * 18 17 16 20 20 H 1.08002 * 119.99532 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00480 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99679 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47368 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47402 * 120.00026 * 23 21 19 26 26 H 1.48495 * 109.47537 * 239.99929 * 23 21 19 27 27 C 1.48359 * 108.16309 * 1.48477 * 18 17 16 28 28 H 1.09000 * 108.31652 * 89.73252 * 27 18 17 29 29 C 1.46761 * 121.21920 * 184.57017 * 11 9 3 30 30 H 1.09004 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47132 * 299.99350 * 1 2 3 32 32 H 1.08995 * 109.47012 * 60.00248 * 1 2 3 33 33 H 1.08997 * 109.46968 * 120.00295 * 2 1 3 34 34 H 1.08998 * 109.47165 * 239.99863 * 2 1 3 35 35 H 0.96998 * 119.99904 * 95.00849 * 5 3 2 36 36 H 1.08996 * 109.47404 * 90.00526 * 7 6 5 37 37 H 1.09005 * 109.46960 * 210.00817 * 7 6 5 38 38 H 1.09008 * 109.47332 * 330.00333 * 7 6 5 39 39 H 1.08999 * 109.75824 * 242.31920 * 12 11 9 40 40 H 1.09004 * 109.76155 * 3.02332 * 12 11 9 41 41 H 1.08997 * 109.25574 * 177.62879 * 13 12 11 42 42 H 1.09001 * 109.25359 * 297.09220 * 13 12 11 43 43 H 1.09004 * 110.77962 * 196.66439 * 16 14 13 44 44 H 1.08997 * 110.78418 * 319.91206 * 16 14 13 45 45 H 1.08999 * 109.90492 * 142.22924 * 17 16 14 46 46 H 1.09000 * 109.89645 * 263.29063 * 17 16 14 47 47 H 0.97002 * 119.99840 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.22889 * 352.86250 * 29 11 9 49 49 H 1.08995 * 109.22383 * 112.22809 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9854 -0.8334 5 7 1.6690 2.0915 1.2599 6 6 0.4534 2.6579 1.3938 7 6 0.0719 3.3260 2.6896 8 8 -0.3335 2.6299 0.4713 9 6 3.5402 1.4450 -0.1436 10 8 4.2426 1.5989 0.8330 11 7 4.1012 1.2761 -1.3574 12 6 3.2771 1.1928 -2.5736 13 6 3.7369 2.2915 -3.5313 14 6 5.2285 2.1444 -3.8429 15 1 5.4385 1.2859 -4.4808 16 6 5.6812 3.4961 -4.4772 17 6 5.8283 4.4151 -3.2439 18 7 6.0347 3.5423 -2.0737 19 6 6.1785 3.9549 -0.7759 20 1 6.3252 3.2275 0.0088 21 6 6.1358 5.3080 -0.4690 22 7 5.9565 6.1944 -1.4253 23 14 6.3312 5.8707 1.3014 24 1 6.5180 4.6876 2.1793 25 1 7.5161 6.7593 1.4105 26 1 5.1157 6.6128 1.7221 27 6 6.0559 2.1354 -2.5440 28 1 7.0842 1.8728 -2.7925 29 6 5.5568 1.1748 -1.5151 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 2.2983 2.1138 1.9977 36 1 0.3564 4.3776 2.6537 37 1 -1.0052 3.2458 2.8364 38 1 0.5886 2.8378 3.5160 39 1 3.4086 0.2172 -3.0417 40 1 2.2276 1.3405 -2.3186 41 1 3.1675 2.2220 -4.4581 42 1 3.5603 3.2647 -3.0732 43 1 6.6360 3.3819 -4.9904 44 1 4.9208 3.8774 -5.1587 45 1 6.6877 5.0733 -3.3720 46 1 4.9231 5.0081 -3.1130 47 1 5.9270 7.1399 -1.2108 48 1 6.0369 1.3837 -0.5591 49 1 5.8139 0.1641 -1.8319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223549586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:54 Heat of formation + Delta-G solvation = -41.322396 kcal Electronic energy + Delta-G solvation = -30308.637765 eV Core-core repulsion = 26464.451393 eV Total energy + Delta-G solvation = -3844.186373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.54118 -39.41551 -38.04412 -35.23662 -35.03464 -32.87083 -32.54444 -31.23015 -29.77981 -29.36802 -28.38414 -26.80971 -24.62582 -23.72788 -22.57517 -21.95405 -20.54241 -19.96784 -19.75724 -18.34501 -17.38298 -16.71916 -16.37304 -15.96497 -15.71725 -15.19770 -14.77683 -14.67098 -14.21349 -13.99629 -13.95174 -13.65749 -13.47856 -13.08883 -12.97468 -12.70279 -12.59662 -12.40886 -12.06409 -11.95893 -11.87422 -11.63310 -11.52601 -11.36896 -11.22569 -10.93721 -10.88308 -10.76313 -10.71576 -10.09323 -9.87428 -9.85746 -9.81112 -9.67322 -9.49236 -9.35878 -8.94222 -8.52694 -8.20061 -6.75950 -5.62452 -2.93995 2.65870 2.89466 3.12690 3.45182 3.51710 3.54982 3.56998 4.55134 4.58651 4.83802 4.95677 4.97015 5.07452 5.09563 5.20327 5.29398 5.35510 5.39903 5.47159 5.50033 5.57501 5.67543 5.71903 5.75636 5.79040 5.81695 5.89240 5.95138 6.00962 6.06387 6.12851 6.24174 6.28760 6.35409 6.42826 6.44517 6.47519 6.60206 6.74043 6.92171 7.03779 7.59592 7.63431 7.64574 7.78184 7.92422 8.28316 8.30189 8.51962 9.30624 9.90038 10.55338 11.49973 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.005988 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.148241 B = 4675.279145 C = 6191.012912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.127 3.873 4 H 0.109 0.891 5 N -0.710 5.710 6 C 0.514 3.486 7 C -0.172 4.172 8 O -0.547 6.547 9 C 0.519 3.481 10 O -0.531 6.531 11 N -0.588 5.588 12 C 0.106 3.894 13 C -0.124 4.124 14 C -0.099 4.099 15 H 0.075 0.925 16 C -0.143 4.143 17 C 0.180 3.820 18 N -0.592 5.592 19 C -0.209 4.209 20 H 0.082 0.918 21 C -0.011 4.011 22 N -0.926 5.926 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.147 3.853 28 H 0.032 0.968 29 C 0.117 3.883 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.411 0.589 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.044 0.956 47 H 0.248 0.752 48 H 0.097 0.903 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 -12.499 -0.422 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C 0.018 3.982 4 H 0.126 0.874 5 N -0.364 5.364 6 C 0.301 3.699 7 C -0.232 4.232 8 O -0.425 6.425 9 C 0.306 3.694 10 O -0.407 6.407 11 N -0.320 5.320 12 C -0.017 4.017 13 C -0.162 4.162 14 C -0.118 4.118 15 H 0.093 0.907 16 C -0.181 4.181 17 C 0.055 3.945 18 N -0.318 5.318 19 C -0.337 4.337 20 H 0.100 0.900 21 C -0.206 4.206 22 N -0.575 5.575 23 Si 0.736 3.264 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.039 3.961 28 H 0.049 0.951 29 C -0.006 4.006 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.115 0.885 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.316 -12.218 -0.405 15.370 hybrid contribution 0.508 0.621 1.105 1.365 sum -8.808 -11.597 0.700 14.579 Atomic orbital electron populations 1.21795 0.94129 1.00649 1.03311 1.21856 0.97430 0.94226 1.02952 1.20877 0.92597 0.95333 0.89349 0.87357 1.45868 1.16879 1.57462 1.16181 1.20719 0.81192 0.77682 0.90288 1.21873 1.03974 1.02494 0.94847 1.90705 1.50668 1.59075 1.42032 1.20221 0.89496 0.76396 0.83309 1.90679 1.63443 1.48901 1.37714 1.47728 1.07409 1.71284 1.05602 1.21776 0.94828 0.99194 0.85891 1.21843 0.95937 1.00155 0.98294 1.22313 0.94784 0.97641 0.97107 0.90714 1.23154 0.99630 0.96182 0.99168 1.21177 1.00373 0.90456 0.82446 1.44792 1.85095 0.98270 1.03640 1.19097 1.40847 0.91132 0.82640 0.90006 1.24702 1.02799 0.95881 0.97235 1.69970 1.57350 1.00364 1.29817 0.86118 0.77017 0.78383 0.84920 1.20266 1.22102 1.22134 1.20730 0.96103 0.87690 0.91531 0.95114 1.21010 0.79558 0.97580 1.02469 0.93330 0.92302 0.91985 0.91267 0.90663 0.75237 0.88655 0.88967 0.90185 0.91472 0.90247 0.91850 0.90075 0.92761 0.92267 0.94197 0.93793 0.94155 0.88455 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.53 37.16 0.32 -1.33 16 2 C -0.13 -1.49 5.42 -26.73 -0.14 -1.64 16 3 C 0.13 1.88 1.81 -69.08 -0.12 1.76 16 4 H 0.11 1.72 5.88 -51.93 -0.31 1.41 16 5 N -0.71 -10.26 5.00 -54.93 -0.27 -10.53 16 6 C 0.51 7.22 6.55 -10.99 -0.07 7.15 16 7 C -0.17 -1.73 10.30 36.00 0.37 -1.36 16 8 O -0.55 -9.16 14.24 5.56 0.08 -9.08 16 9 C 0.52 9.23 6.96 -10.98 -0.08 9.15 16 10 O -0.53 -11.19 15.38 5.56 0.09 -11.11 16 11 N -0.59 -9.78 2.98 -175.19 -0.52 -10.30 16 12 C 0.11 1.42 5.77 -3.77 -0.02 1.40 16 13 C -0.12 -1.89 5.05 -26.77 -0.14 -2.02 16 14 C -0.10 -1.58 3.65 -88.43 -0.32 -1.91 16 15 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.14 -2.56 6.33 -24.32 -0.15 -2.71 16 17 C 0.18 4.28 4.61 -2.74 -0.01 4.26 16 18 N -0.59 -14.45 3.23 -164.02 -0.53 -14.98 16 19 C -0.21 -5.78 9.69 -15.06 -0.15 -5.92 16 20 H 0.08 2.32 6.49 -52.49 -0.34 1.97 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 22 N -0.93 -27.62 10.38 55.49 0.58 -27.04 16 23 Si 0.90 23.24 29.55 -169.99 -5.02 18.21 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 27 C 0.15 2.84 3.02 -68.18 -0.21 2.63 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 C 0.12 2.08 5.60 -5.70 -0.03 2.05 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.75 5.63 -51.93 -0.29 0.46 16 32 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 35 H 0.41 5.81 7.74 -40.82 -0.32 5.49 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.98 5.41 -51.93 -0.28 0.70 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.58 6.85 -51.93 -0.36 1.22 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.96 7.98 -51.93 -0.41 0.55 16 45 H 0.04 1.07 7.57 -51.93 -0.39 0.67 16 46 H 0.04 1.17 7.05 -51.93 -0.37 0.81 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.10 2.04 5.49 -51.93 -0.29 1.76 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -33.70 370.23 -8.82 -42.52 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.94 Total: 5.63 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.86 Total: 11.10 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.75 Total: -62.85 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.16 Total: -20.19 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.70 -8.82 -42.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223549586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.201 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds