Wall clock time and date at job start Tue Mar 31 2020 13:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 H 1.08996 * 109.47288 * 305.80160 * 3 2 1 5 5 N 1.46504 * 109.46759 * 65.80457 * 3 2 1 6 6 C 1.34776 * 119.99974 * 274.99057 * 5 3 2 7 7 C 1.50695 * 120.00102 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99712 * 0.02562 * 6 5 3 9 9 C 1.50701 * 109.47168 * 185.80070 * 3 2 1 10 10 O 1.21281 * 120.00016 * 259.69777 * 9 3 2 11 11 N 1.34780 * 119.99868 * 79.69450 * 9 3 2 12 12 C 1.47154 * 121.21863 * 4.85360 * 11 9 3 13 13 C 1.52834 * 107.97907 * 122.70136 * 12 11 9 14 14 C 1.53088 * 110.58654 * 57.33912 * 13 12 11 15 15 H 1.09000 * 112.48855 * 71.38744 * 14 13 12 16 16 C 1.56022 * 106.39120 * 195.45066 * 14 13 12 17 17 C 1.54505 * 102.61607 * 78.38607 * 16 14 13 18 18 N 1.47436 * 107.14514 * 22.85038 * 17 16 14 19 19 C 1.36932 * 126.05495 * 181.64774 * 18 17 16 20 20 H 1.08002 * 119.99532 * 179.97438 * 19 18 17 21 21 C 1.38807 * 120.00480 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99679 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47368 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47402 * 120.00026 * 23 21 19 26 26 H 1.48495 * 109.47537 * 239.99929 * 23 21 19 27 27 C 1.48359 * 108.16309 * 1.48477 * 18 17 16 28 28 H 1.09000 * 108.31652 * 89.73252 * 27 18 17 29 29 C 1.46761 * 121.21920 * 184.57017 * 11 9 3 30 30 H 1.09004 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47132 * 299.99350 * 1 2 3 32 32 H 1.08995 * 109.47012 * 60.00248 * 1 2 3 33 33 H 1.08997 * 109.46968 * 120.00295 * 2 1 3 34 34 H 1.08998 * 109.47165 * 239.99863 * 2 1 3 35 35 H 0.96998 * 119.99904 * 95.00849 * 5 3 2 36 36 H 1.08996 * 109.47404 * 90.00526 * 7 6 5 37 37 H 1.09005 * 109.46960 * 210.00817 * 7 6 5 38 38 H 1.09008 * 109.47332 * 330.00333 * 7 6 5 39 39 H 1.08999 * 109.75824 * 242.31920 * 12 11 9 40 40 H 1.09004 * 109.76155 * 3.02332 * 12 11 9 41 41 H 1.08997 * 109.25574 * 177.62879 * 13 12 11 42 42 H 1.09001 * 109.25359 * 297.09220 * 13 12 11 43 43 H 1.09004 * 110.77962 * 196.66439 * 16 14 13 44 44 H 1.08997 * 110.78418 * 319.91206 * 16 14 13 45 45 H 1.08999 * 109.90492 * 142.22924 * 17 16 14 46 46 H 1.09000 * 109.89645 * 263.29063 * 17 16 14 47 47 H 0.97002 * 119.99840 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.22889 * 352.86250 * 29 11 9 49 49 H 1.08995 * 109.22383 * 112.22809 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9854 -0.8334 5 7 1.6690 2.0915 1.2599 6 6 0.4534 2.6579 1.3938 7 6 0.0719 3.3260 2.6896 8 8 -0.3335 2.6299 0.4713 9 6 3.5402 1.4450 -0.1436 10 8 4.2426 1.5989 0.8330 11 7 4.1012 1.2761 -1.3574 12 6 3.2771 1.1928 -2.5736 13 6 3.7369 2.2915 -3.5313 14 6 5.2285 2.1444 -3.8429 15 1 5.4385 1.2859 -4.4808 16 6 5.6812 3.4961 -4.4772 17 6 5.8283 4.4151 -3.2439 18 7 6.0347 3.5423 -2.0737 19 6 6.1785 3.9549 -0.7759 20 1 6.3252 3.2275 0.0088 21 6 6.1358 5.3080 -0.4690 22 7 5.9565 6.1944 -1.4253 23 14 6.3312 5.8707 1.3014 24 1 6.5180 4.6876 2.1793 25 1 7.5161 6.7593 1.4105 26 1 5.1157 6.6128 1.7221 27 6 6.0559 2.1354 -2.5440 28 1 7.0842 1.8728 -2.7925 29 6 5.5568 1.1748 -1.5151 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 2.2983 2.1138 1.9977 36 1 0.3564 4.3776 2.6537 37 1 -1.0052 3.2458 2.8364 38 1 0.5886 2.8378 3.5160 39 1 3.4086 0.2172 -3.0417 40 1 2.2276 1.3405 -2.3186 41 1 3.1675 2.2220 -4.4581 42 1 3.5603 3.2647 -3.0732 43 1 6.6360 3.3819 -4.9904 44 1 4.9208 3.8774 -5.1587 45 1 6.6877 5.0733 -3.3720 46 1 4.9231 5.0081 -3.1130 47 1 5.9270 7.1399 -1.2108 48 1 6.0369 1.3837 -0.5591 49 1 5.8139 0.1641 -1.8319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223549586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:53 Heat of formation + Delta-G solvation = -65.272363 kcal Electronic energy + Delta-G solvation = -30309.676314 eV Core-core repulsion = 26464.451393 eV Total energy + Delta-G solvation = -3845.224921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.82174 -40.69338 -39.48704 -36.60153 -36.36999 -34.67615 -33.62964 -32.84845 -31.07426 -30.54992 -30.06905 -27.99523 -26.47925 -25.21673 -23.92690 -22.99709 -21.75075 -21.71223 -21.05829 -19.77055 -18.61847 -18.42450 -17.78774 -17.20388 -16.92370 -16.80528 -16.26181 -16.05867 -15.88776 -15.51964 -15.17143 -14.98435 -14.65546 -14.43279 -14.23849 -14.11020 -13.77116 -13.57841 -13.38249 -13.18011 -13.12352 -13.06515 -12.96115 -12.84937 -12.62414 -12.53516 -12.47588 -12.34280 -12.01673 -11.87577 -11.65028 -11.41040 -11.28692 -11.17178 -10.95019 -10.70978 -10.67770 -10.11790 -9.53490 -8.81023 -7.82649 -5.12375 1.35214 1.36341 1.47268 1.48101 1.66512 1.91718 2.39665 2.47672 3.33801 3.36955 3.56495 3.78837 3.84691 3.91805 3.94223 4.00404 4.11092 4.28161 4.35043 4.44929 4.48894 4.49148 4.54463 4.59867 4.60281 4.66662 4.73500 4.81973 4.87529 4.88950 4.98567 5.01039 5.02343 5.11677 5.12875 5.16125 5.29924 5.35800 5.44225 5.53752 5.63024 5.67816 5.71575 5.81967 6.22473 6.47765 6.48233 7.14635 7.15754 7.19700 7.82433 8.46452 9.28320 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.005988 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.148241 B = 4675.279145 C = 6191.012912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C 0.132 3.868 4 H 0.097 0.903 5 N -0.714 5.714 6 C 0.507 3.493 7 C -0.167 4.167 8 O -0.577 6.577 9 C 0.510 3.490 10 O -0.575 6.575 11 N -0.589 5.589 12 C 0.104 3.896 13 C -0.122 4.122 14 C -0.081 4.081 15 H 0.126 0.874 16 C -0.130 4.130 17 C 0.188 3.812 18 N -0.609 5.609 19 C -0.194 4.194 20 H 0.072 0.928 21 C -0.072 4.072 22 N -0.954 5.954 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.297 1.297 27 C 0.136 3.864 28 H 0.035 0.965 29 C 0.119 3.881 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.411 0.589 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.027 0.973 43 H 0.069 0.931 44 H 0.079 0.921 45 H -0.004 1.004 46 H 0.002 0.998 47 H 0.240 0.760 48 H 0.057 0.943 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 -15.674 -1.680 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C 0.023 3.977 4 H 0.115 0.885 5 N -0.368 5.368 6 C 0.296 3.704 7 C -0.226 4.226 8 O -0.458 6.458 9 C 0.298 3.702 10 O -0.454 6.454 11 N -0.321 5.321 12 C -0.017 4.017 13 C -0.160 4.160 14 C -0.100 4.100 15 H 0.144 0.856 16 C -0.168 4.168 17 C 0.063 3.937 18 N -0.335 5.335 19 C -0.324 4.324 20 H 0.089 0.911 21 C -0.264 4.264 22 N -0.605 5.605 23 Si 0.787 3.213 24 H -0.200 1.200 25 H -0.220 1.220 26 H -0.225 1.225 27 C 0.030 3.970 28 H 0.053 0.947 29 C -0.004 4.004 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.014 0.986 46 H 0.020 0.980 47 H 0.049 0.951 48 H 0.076 0.924 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.367 -15.440 -1.690 18.674 hybrid contribution 0.880 1.572 1.463 2.320 sum -9.487 -13.869 -0.227 16.805 Atomic orbital electron populations 1.21713 0.93734 1.01656 1.02057 1.21821 0.97489 0.92045 1.04054 1.20893 0.90359 0.97208 0.89213 0.88546 1.46016 1.17126 1.57595 1.16093 1.21429 0.80559 0.77110 0.91261 1.21912 1.05177 1.02184 0.93337 1.90683 1.51393 1.60267 1.43411 1.20793 0.90595 0.75624 0.83208 1.90652 1.64598 1.50949 1.39230 1.47898 1.07328 1.70390 1.06469 1.22074 0.94742 1.00744 0.84154 1.21816 0.96047 0.98091 1.00031 1.22374 0.94426 0.98038 0.95204 0.85603 1.23019 1.01301 0.95930 0.96553 1.20903 0.96429 0.91142 0.85241 1.45016 1.84534 1.01211 1.02750 1.19181 1.38316 0.90736 0.84203 0.91057 1.25358 1.04435 0.96425 1.00186 1.70174 1.59449 0.99909 1.30989 0.85291 0.76604 0.77752 0.81652 1.20018 1.22002 1.22480 1.21081 0.97263 0.84937 0.93691 0.94735 1.20906 0.80209 0.99304 0.99992 0.91074 0.93849 0.92977 0.91063 0.88580 0.75199 0.88505 0.87553 0.87913 0.86832 0.89293 0.88098 0.95359 0.91274 0.90270 0.98595 0.97974 0.95088 0.92432 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.53 71.98 0.61 -2.24 16 2 C -0.12 -2.49 5.42 30.60 0.17 -2.32 16 3 C 0.13 3.82 1.81 44.24 0.08 3.90 16 4 H 0.10 3.03 5.88 -2.39 -0.01 3.01 16 5 N -0.71 -20.65 5.00 -446.10 -2.23 -22.88 16 6 C 0.51 14.14 6.55 87.66 0.57 14.71 16 7 C -0.17 -3.18 10.30 71.23 0.73 -2.44 16 8 O -0.58 -19.32 14.24 -3.04 -0.04 -19.36 16 9 C 0.51 17.93 6.96 87.66 0.61 18.54 16 10 O -0.57 -24.74 15.38 -3.03 -0.05 -24.79 16 11 N -0.59 -18.52 2.98 -826.57 -2.46 -20.98 16 12 C 0.10 2.39 5.77 86.20 0.50 2.89 16 13 C -0.12 -3.31 5.05 30.57 0.15 -3.15 16 14 C -0.08 -2.28 3.65 -9.38 -0.03 -2.32 16 15 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.13 -4.38 6.33 32.15 0.20 -4.17 16 17 C 0.19 9.23 4.61 86.71 0.40 9.63 16 18 N -0.61 -30.44 3.23 -672.84 -2.17 -32.61 16 19 C -0.19 -11.18 9.69 84.03 0.81 -10.36 16 20 H 0.07 4.21 6.49 -2.91 -0.02 4.19 16 21 C -0.07 -4.34 5.49 84.86 0.47 -3.88 16 22 N -0.95 -60.02 10.38 21.65 0.22 -59.79 16 23 Si 0.96 49.83 29.55 68.60 2.03 51.85 16 24 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 25 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 26 H -0.30 -15.48 7.11 99.48 0.71 -14.78 16 27 C 0.14 5.02 3.02 43.81 0.13 5.15 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 C 0.12 4.03 5.60 85.17 0.48 4.50 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.04 1.06 5.63 -2.39 -0.01 1.04 16 32 H 0.05 1.21 7.89 -2.39 -0.02 1.19 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.67 7.53 -2.39 -0.02 1.65 16 35 H 0.41 11.78 7.74 -92.71 -0.72 11.06 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.92 5.41 -2.38 -0.01 1.91 16 41 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.03 1.07 6.85 -2.39 -0.02 1.06 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.37 7.98 -2.39 -0.02 2.36 16 45 H 0.00 -0.24 7.57 -2.39 -0.02 -0.26 16 46 H 0.00 0.11 7.05 -2.39 -0.02 0.10 16 47 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.06 2.43 5.49 -2.39 -0.01 2.42 16 49 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -80.56 370.23 1.42 -79.13 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.24 Total: 20.99 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 5.89 Total: 28.45 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -6.64 Total: -136.27 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.09 Total: -44.15 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.85 kcal Total: -80.56 1.42 -79.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223549586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.859 kcal (2) G-P(sol) polarization free energy of solvation -80.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds