Wall clock time and date at job start Tue Mar 31 2020 13:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47145 * 2 1 4 4 H 1.09006 * 109.47190 * 182.77835 * 3 2 1 5 5 C 1.50703 * 109.47163 * 302.78137 * 3 2 1 6 6 H 1.07999 * 119.99765 * 120.00135 * 5 3 2 7 7 C 1.37877 * 120.00042 * 299.99480 * 5 3 2 8 8 N 1.31518 * 119.99880 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46846 * 90.00697 * 9 7 5 11 11 H 1.48498 * 109.46920 * 210.00343 * 9 7 5 12 12 H 1.48500 * 109.46898 * 330.00583 * 9 7 5 13 13 N 1.46900 * 109.47005 * 62.78255 * 3 2 1 14 14 C 1.46897 * 111.00170 * 87.26258 * 13 3 2 15 15 H 1.08997 * 109.47159 * 322.25520 * 14 13 3 16 16 C 1.53006 * 109.47346 * 82.25545 * 14 13 3 17 17 C 1.53006 * 109.47260 * 202.25569 * 14 13 3 18 18 C 1.50701 * 109.46848 * 64.99935 * 17 14 13 19 19 C 1.38318 * 119.87995 * 90.00534 * 18 17 14 20 20 C 1.38014 * 120.12048 * 180.02562 * 19 18 17 21 21 C 1.39339 * 119.88058 * 359.97438 * 20 19 18 22 22 C 1.48392 * 120.12321 * 179.97438 * 21 20 19 23 23 C 1.39335 * 120.11950 * 180.02562 * 22 21 20 24 24 C 1.38014 * 119.87687 * 180.02562 * 23 22 21 25 25 C 1.38326 * 120.11862 * 359.97438 * 24 23 22 26 26 C 1.38320 * 120.24691 * 0.25684 * 25 24 23 27 27 C 1.38017 * 120.11947 * 359.48883 * 26 25 24 28 28 C 1.39336 * 119.75299 * 0.25098 * 21 20 19 29 29 C 1.38020 * 119.88155 * 359.49631 * 28 21 20 30 30 H 1.09004 * 109.47499 * 55.82882 * 1 2 3 31 31 H 1.09001 * 109.47419 * 175.82277 * 1 2 3 32 32 H 1.08996 * 109.47508 * 295.82086 * 1 2 3 33 33 H 1.09008 * 109.47153 * 239.99876 * 2 1 3 34 34 H 1.08998 * 109.46940 * 120.00641 * 2 1 3 35 35 H 0.96995 * 119.99649 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00129 * 211.21054 * 13 3 2 37 37 H 1.08998 * 109.46678 * 299.99826 * 16 14 13 38 38 H 1.08997 * 109.47011 * 59.99885 * 16 14 13 39 39 H 1.09005 * 109.46818 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.46893 * 304.99744 * 17 14 13 41 41 H 1.08994 * 109.46789 * 184.99819 * 17 14 13 42 42 H 1.08005 * 119.93739 * 0.03373 * 19 18 17 43 43 H 1.08005 * 120.06234 * 180.02562 * 20 19 18 44 44 H 1.07998 * 120.06086 * 359.97438 * 23 22 21 45 45 H 1.07997 * 119.94459 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.87238 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.93692 * 179.74646 * 26 25 24 48 48 H 1.07994 * 120.06734 * 180.23968 * 27 26 25 49 49 H 1.08007 * 120.05597 * 179.74769 * 28 21 20 50 50 H 1.07998 * 119.94091 * 180.24943 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1289 1.4428 -0.0498 5 6 1.4821 2.1725 -1.1946 6 1 0.8667 3.0486 -1.0529 7 6 1.7575 1.7219 -2.4682 8 7 2.5065 0.6548 -2.6406 9 14 1.0654 2.6265 -3.9488 10 1 2.0240 3.6752 -4.3806 11 1 0.8500 1.6651 -5.0599 12 1 -0.2278 3.2581 -3.5829 13 7 1.6059 2.1152 1.2316 14 6 2.5689 1.8954 2.3190 15 1 2.9557 0.8780 2.2616 16 6 3.7248 2.8888 2.1852 17 6 1.8729 2.1011 3.6660 18 6 0.8145 1.0444 3.8510 19 6 1.1368 -0.1542 4.4616 20 6 0.1715 -1.1256 4.6331 21 6 -1.1298 -0.8969 4.1904 22 6 -2.1718 -1.9378 4.3716 23 6 -3.4729 -1.7093 3.9285 24 6 -4.4381 -2.6807 4.1000 25 6 -4.1157 -3.8796 4.7101 26 6 -2.8268 -4.1098 5.1562 27 6 -1.8524 -3.1475 4.9851 28 6 -1.4477 0.3105 3.5719 29 6 -0.4758 1.2770 3.4101 30 1 -0.3634 0.5772 -0.8503 31 1 -0.3634 -1.0249 -0.0749 32 1 -0.3634 0.4476 0.9250 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.6999 0.3376 -3.5366 36 1 1.4588 3.1007 1.0728 37 1 4.2206 2.7422 1.2257 38 1 3.3380 3.9062 2.2427 39 1 4.4395 2.7253 2.9919 40 1 1.4096 3.0874 3.6886 41 1 2.6061 2.0255 4.4689 42 1 2.1456 -0.3301 4.8048 43 1 0.4240 -2.0610 5.1103 44 1 -3.7257 -0.7735 3.4524 45 1 -5.4468 -2.5049 3.7566 46 1 -4.8743 -4.6368 4.8427 47 1 -2.5816 -5.0461 5.6355 48 1 -0.8455 -3.3297 5.3303 49 1 -2.4538 0.4912 3.2232 50 1 -0.7220 2.2148 2.9344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652111332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:47 Heat of formation + Delta-G solvation = 31.441660 kcal Electronic energy + Delta-G solvation = -27235.467550 eV Core-core repulsion = 23805.285727 eV Total energy + Delta-G solvation = -3430.181823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.78840 -38.46464 -36.84398 -34.22425 -32.60404 -31.38831 -31.18655 -30.31122 -29.68359 -28.38102 -25.98926 -25.62235 -23.41766 -23.15020 -22.65888 -21.29910 -20.78927 -20.08889 -18.75922 -17.52467 -16.35876 -15.86458 -15.43729 -15.33216 -14.91884 -14.28688 -14.15802 -13.89950 -13.79036 -13.70684 -13.55949 -13.22424 -13.12495 -12.85562 -12.67318 -12.33266 -12.05199 -11.84408 -11.72627 -11.63183 -11.50767 -11.24200 -11.16091 -10.91608 -10.66692 -10.54825 -10.49989 -10.41307 -10.20480 -9.93611 -9.67307 -9.39444 -9.23623 -8.99318 -8.72024 -8.53426 -8.43385 -7.69541 -7.12925 -5.98679 -4.03375 0.83252 1.36534 1.78810 2.11014 3.29615 3.37220 3.40095 3.73180 4.28474 4.42173 4.71098 4.75690 4.90184 4.99930 5.10291 5.21633 5.29016 5.29780 5.34955 5.40741 5.42244 5.59004 5.70497 5.76009 5.80590 5.91407 5.94885 5.98693 5.99267 6.15003 6.23309 6.32384 6.37832 6.41954 6.44152 6.47021 6.57516 6.62828 6.68951 6.76448 6.79391 6.93069 6.97264 6.97933 7.06849 7.33624 7.36145 7.43860 7.59238 7.82446 7.84744 7.92395 8.32149 8.46144 8.73757 9.07151 9.60998 11.07218 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003478 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.368768 B = 8049.063533 C = 9470.370160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.096 4.096 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.089 3.911 15 H 0.071 0.929 16 C -0.178 4.178 17 C -0.072 4.072 18 C -0.045 4.045 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.066 4.066 22 C -0.029 4.029 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.130 4.130 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.106 4.106 29 C -0.080 4.080 30 H 0.053 0.947 31 H 0.007 0.993 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.007 0.993 35 H 0.259 0.741 36 H 0.328 0.672 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.118 0.882 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.244 -4.071 16.622 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.135 4.135 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.305 5.305 14 C -0.022 4.022 15 H 0.089 0.911 16 C -0.237 4.237 17 C -0.110 4.110 18 C -0.045 4.045 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.066 4.066 22 C -0.029 4.029 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.124 4.124 29 C -0.098 4.098 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.585 -4.715 16.652 18.896 hybrid contribution 0.466 0.845 -1.372 1.677 sum -7.119 -3.870 15.281 17.297 Atomic orbital electron populations 1.21461 0.97542 0.97113 1.01445 1.21351 0.95092 0.98191 0.98828 1.19078 0.93284 0.91511 0.84957 0.98262 1.21190 1.31433 1.11798 0.90491 0.92485 1.24869 0.95177 0.94985 0.98762 1.69897 1.37767 1.23163 1.21854 0.86634 0.79428 0.79468 0.82682 1.20927 1.21318 1.19915 1.60784 1.45263 1.16459 1.08037 1.21467 0.90649 0.98599 0.91515 0.91121 1.22506 0.99567 0.99865 1.01806 1.20708 0.95877 0.97029 0.97348 1.19788 0.94511 0.94893 0.95350 1.20885 0.98768 0.93722 1.00756 1.21018 0.92444 0.98845 1.00552 1.18621 0.92857 0.93833 1.01258 1.18892 0.93021 0.93565 0.97401 1.21284 0.92494 0.99660 0.99815 1.21080 0.99276 0.93861 0.99358 1.21149 0.96636 0.97409 0.99593 1.21056 0.93344 0.99053 1.00239 1.21244 0.99514 0.93229 0.99516 1.21141 0.99478 0.93100 0.98693 1.20882 0.92229 0.99446 0.97287 0.92801 0.97346 0.93393 0.90173 0.97426 0.93077 0.85480 0.92121 0.93044 0.93481 0.91344 0.91828 0.86613 0.86585 0.85655 0.86099 0.86363 0.86185 0.85856 0.86411 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.16 0.35 -2.37 16 2 C -0.10 -2.34 5.57 -26.74 -0.15 -2.49 16 3 C 0.22 5.26 2.10 -68.87 -0.14 5.11 16 4 H 0.00 -0.01 6.91 -51.93 -0.36 -0.37 16 5 C -0.51 -13.38 7.12 -34.44 -0.25 -13.63 16 6 H 0.06 1.49 7.58 -52.49 -0.40 1.09 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.09 11.35 55.43 0.63 -24.46 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.17 4.86 -100.95 -0.49 -13.66 16 14 C 0.09 1.48 2.40 -67.71 -0.16 1.32 16 15 H 0.07 1.32 7.27 -51.93 -0.38 0.94 16 16 C -0.18 -2.75 9.15 37.16 0.34 -2.41 16 17 C -0.07 -0.99 5.02 -27.88 -0.14 -1.13 16 18 C -0.05 -0.67 4.96 -104.56 -0.52 -1.19 16 19 C -0.12 -1.73 9.68 -39.63 -0.38 -2.12 16 20 C -0.11 -1.52 9.43 -39.25 -0.37 -1.90 16 21 C -0.07 -0.94 5.88 -104.90 -0.62 -1.56 16 22 C -0.03 -0.38 5.88 -104.90 -0.62 -1.00 16 23 C -0.11 -1.40 9.43 -39.26 -0.37 -1.77 16 24 C -0.12 -1.26 10.03 -39.63 -0.40 -1.65 16 25 C -0.13 -1.31 10.04 -39.52 -0.40 -1.71 16 26 C -0.12 -1.24 10.03 -39.63 -0.40 -1.63 16 27 C -0.12 -1.38 9.43 -39.25 -0.37 -1.75 16 28 C -0.11 -1.54 9.35 -39.25 -0.37 -1.91 16 29 C -0.08 -1.21 8.10 -39.63 -0.32 -1.53 16 30 H 0.05 1.33 6.98 -51.93 -0.36 0.97 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.05 1.03 6.49 -51.93 -0.34 0.69 16 33 H 0.08 2.20 6.15 -51.92 -0.32 1.88 16 34 H 0.01 0.17 7.54 -51.93 -0.39 -0.22 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.33 6.36 7.96 -39.29 -0.31 6.05 16 37 H 0.06 1.08 7.25 -51.93 -0.38 0.70 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.12 1.35 6.21 -52.48 -0.33 1.02 16 44 H 0.13 1.39 6.21 -52.49 -0.33 1.07 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.27 6.21 -52.49 -0.33 0.95 16 49 H 0.12 1.52 6.21 -52.48 -0.33 1.19 16 50 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -28.52 393.65 -12.21 -40.73 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.89 Total: 9.05 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -5.37 Total: -33.67 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.14 Total: -38.12 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.52 -12.21 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.171 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds