Wall clock time and date at job start Tue Mar 31 2020 13:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47145 * 2 1 4 4 H 1.09006 * 109.47190 * 182.77835 * 3 2 1 5 5 C 1.50703 * 109.47163 * 302.78137 * 3 2 1 6 6 H 1.07999 * 119.99765 * 120.00135 * 5 3 2 7 7 C 1.37877 * 120.00042 * 299.99480 * 5 3 2 8 8 N 1.31518 * 119.99880 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99920 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46846 * 90.00697 * 9 7 5 11 11 H 1.48498 * 109.46920 * 210.00343 * 9 7 5 12 12 H 1.48500 * 109.46898 * 330.00583 * 9 7 5 13 13 N 1.46900 * 109.47005 * 62.78255 * 3 2 1 14 14 C 1.46897 * 111.00170 * 87.26258 * 13 3 2 15 15 H 1.08997 * 109.47159 * 322.25520 * 14 13 3 16 16 C 1.53006 * 109.47346 * 82.25545 * 14 13 3 17 17 C 1.53006 * 109.47260 * 202.25569 * 14 13 3 18 18 C 1.50701 * 109.46848 * 64.99935 * 17 14 13 19 19 C 1.38318 * 119.87995 * 90.00534 * 18 17 14 20 20 C 1.38014 * 120.12048 * 180.02562 * 19 18 17 21 21 C 1.39339 * 119.88058 * 359.97438 * 20 19 18 22 22 C 1.48392 * 120.12321 * 179.97438 * 21 20 19 23 23 C 1.39335 * 120.11950 * 180.02562 * 22 21 20 24 24 C 1.38014 * 119.87687 * 180.02562 * 23 22 21 25 25 C 1.38326 * 120.11862 * 359.97438 * 24 23 22 26 26 C 1.38320 * 120.24691 * 0.25684 * 25 24 23 27 27 C 1.38017 * 120.11947 * 359.48883 * 26 25 24 28 28 C 1.39336 * 119.75299 * 0.25098 * 21 20 19 29 29 C 1.38020 * 119.88155 * 359.49631 * 28 21 20 30 30 H 1.09004 * 109.47499 * 55.82882 * 1 2 3 31 31 H 1.09001 * 109.47419 * 175.82277 * 1 2 3 32 32 H 1.08996 * 109.47508 * 295.82086 * 1 2 3 33 33 H 1.09008 * 109.47153 * 239.99876 * 2 1 3 34 34 H 1.08998 * 109.46940 * 120.00641 * 2 1 3 35 35 H 0.96995 * 119.99649 * 179.97438 * 8 7 5 36 36 H 1.00902 * 111.00129 * 211.21054 * 13 3 2 37 37 H 1.08998 * 109.46678 * 299.99826 * 16 14 13 38 38 H 1.08997 * 109.47011 * 59.99885 * 16 14 13 39 39 H 1.09005 * 109.46818 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.46893 * 304.99744 * 17 14 13 41 41 H 1.08994 * 109.46789 * 184.99819 * 17 14 13 42 42 H 1.08005 * 119.93739 * 0.03373 * 19 18 17 43 43 H 1.08005 * 120.06234 * 180.02562 * 20 19 18 44 44 H 1.07998 * 120.06086 * 359.97438 * 23 22 21 45 45 H 1.07997 * 119.94459 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.87238 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.93692 * 179.74646 * 26 25 24 48 48 H 1.07994 * 120.06734 * 180.23968 * 27 26 25 49 49 H 1.08007 * 120.05597 * 179.74769 * 28 21 20 50 50 H 1.07998 * 119.94091 * 180.24943 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1289 1.4428 -0.0498 5 6 1.4821 2.1725 -1.1946 6 1 0.8667 3.0486 -1.0529 7 6 1.7575 1.7219 -2.4682 8 7 2.5065 0.6548 -2.6406 9 14 1.0654 2.6265 -3.9488 10 1 2.0240 3.6752 -4.3806 11 1 0.8500 1.6651 -5.0599 12 1 -0.2278 3.2581 -3.5829 13 7 1.6059 2.1152 1.2316 14 6 2.5689 1.8954 2.3190 15 1 2.9557 0.8780 2.2616 16 6 3.7248 2.8888 2.1852 17 6 1.8729 2.1011 3.6660 18 6 0.8145 1.0444 3.8510 19 6 1.1368 -0.1542 4.4616 20 6 0.1715 -1.1256 4.6331 21 6 -1.1298 -0.8969 4.1904 22 6 -2.1718 -1.9378 4.3716 23 6 -3.4729 -1.7093 3.9285 24 6 -4.4381 -2.6807 4.1000 25 6 -4.1157 -3.8796 4.7101 26 6 -2.8268 -4.1098 5.1562 27 6 -1.8524 -3.1475 4.9851 28 6 -1.4477 0.3105 3.5719 29 6 -0.4758 1.2770 3.4101 30 1 -0.3634 0.5772 -0.8503 31 1 -0.3634 -1.0249 -0.0749 32 1 -0.3634 0.4476 0.9250 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.6999 0.3376 -3.5366 36 1 1.4588 3.1007 1.0728 37 1 4.2206 2.7422 1.2257 38 1 3.3380 3.9062 2.2427 39 1 4.4395 2.7253 2.9919 40 1 1.4096 3.0874 3.6886 41 1 2.6061 2.0255 4.4689 42 1 2.1456 -0.3301 4.8048 43 1 0.4240 -2.0610 5.1103 44 1 -3.7257 -0.7735 3.4524 45 1 -5.4468 -2.5049 3.7566 46 1 -4.8743 -4.6368 4.8427 47 1 -2.5816 -5.0461 5.6355 48 1 -0.8455 -3.3297 5.3303 49 1 -2.4538 0.4912 3.2232 50 1 -0.7220 2.2148 2.9344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652111332.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:46 Heat of formation + Delta-G solvation = 20.108485 kcal Electronic energy + Delta-G solvation = -27235.958994 eV Core-core repulsion = 23805.285727 eV Total energy + Delta-G solvation = -3430.673267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.76704 -39.50428 -38.33561 -35.84514 -33.88506 -33.02143 -32.29797 -31.28358 -30.97290 -29.80763 -27.64996 -26.98374 -25.10656 -24.32024 -23.69864 -22.26374 -22.12363 -21.27639 -20.52711 -18.49052 -18.21589 -16.97546 -16.75180 -16.41893 -16.34864 -15.76813 -15.39236 -15.26331 -15.07674 -14.81434 -14.62229 -14.52077 -14.42152 -13.98856 -13.83497 -13.76600 -13.66765 -13.40765 -13.17257 -12.85871 -12.79813 -12.76645 -12.45058 -12.33834 -12.17237 -12.08923 -11.86853 -11.73853 -11.57775 -11.48156 -11.39418 -11.25095 -10.73581 -10.51118 -10.31497 -9.82591 -9.64024 -8.83390 -8.67779 -8.06276 -6.17052 -0.12044 0.53198 0.69663 1.12358 1.40676 1.43137 1.51999 2.43905 2.80772 3.22964 3.25619 3.72565 3.77998 3.88569 4.03365 4.10722 4.19997 4.25416 4.31683 4.38663 4.48995 4.52578 4.58806 4.62457 4.69360 4.70670 4.75521 4.83298 4.93764 4.96729 5.00425 5.04563 5.06138 5.14807 5.17876 5.31181 5.32374 5.38558 5.41387 5.48302 5.51881 5.55587 5.63240 5.63958 5.72142 5.76306 5.87440 5.92839 5.93800 5.99450 6.13485 6.27390 6.32323 6.60648 6.91644 7.16010 7.51632 8.98766 Molecular weight = 323.19amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003478 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.368768 B = 8049.063533 C = 9470.370160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.087 4.087 3 C 0.231 3.769 4 H -0.036 1.036 5 C -0.517 4.517 6 H 0.058 0.942 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.667 5.667 14 C 0.090 3.910 15 H 0.048 0.952 16 C -0.171 4.171 17 C -0.061 4.061 18 C -0.062 4.062 19 C -0.130 4.130 20 C -0.120 4.120 21 C -0.071 4.071 22 C -0.056 4.056 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.121 4.121 29 C -0.092 4.092 30 H 0.033 0.967 31 H 0.014 0.986 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.009 0.991 35 H 0.258 0.742 36 H 0.330 0.670 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.133 0.867 49 H 0.126 0.874 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -4.250 18.048 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.126 4.126 3 C 0.122 3.878 4 H -0.018 1.018 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.297 5.297 14 C -0.021 4.021 15 H 0.066 0.934 16 C -0.230 4.230 17 C -0.098 4.098 18 C -0.062 4.062 19 C -0.148 4.148 20 C -0.138 4.138 21 C -0.071 4.071 22 C -0.056 4.056 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.138 4.138 29 C -0.110 4.110 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.145 0.855 45 H 0.160 0.840 46 H 0.163 0.837 47 H 0.163 0.837 48 H 0.151 0.849 49 H 0.144 0.856 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.742 -4.878 18.099 20.683 hybrid contribution 0.787 0.814 -1.736 2.073 sum -7.956 -4.064 16.363 18.642 Atomic orbital electron populations 1.21296 0.96257 0.97285 1.01190 1.21188 0.95998 0.98158 0.97257 1.18766 0.90922 0.91609 0.86488 1.01839 1.21485 1.30946 1.11748 0.91378 0.92406 1.25595 0.95565 0.95688 1.01414 1.70040 1.39031 1.24534 1.22169 0.85695 0.78996 0.78307 0.79460 1.20430 1.21498 1.19190 1.60682 1.46120 1.16221 1.06717 1.21495 0.90836 0.97749 0.91973 0.93371 1.22404 0.99401 1.00128 1.01042 1.20619 0.96033 0.97314 0.95868 1.19934 0.94628 0.95561 0.96060 1.21149 0.99660 0.93511 1.00440 1.21301 0.92303 0.99634 1.00572 1.18873 0.93526 0.94027 1.00673 1.19025 0.93293 0.94139 0.99102 1.21466 0.92710 1.00406 1.00257 1.21397 0.99970 0.93771 0.99123 1.21552 0.97222 0.97659 0.98305 1.21410 0.93209 0.99646 0.99844 1.21471 1.00526 0.93137 0.99483 1.21318 0.99940 0.93386 0.99205 1.20966 0.92742 0.99562 0.97769 0.94749 0.96671 0.91998 0.93400 0.97220 0.93303 0.85238 0.95263 0.91694 0.90850 0.90365 0.89396 0.84989 0.84779 0.85502 0.84018 0.83653 0.83689 0.84938 0.85614 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.76 9.52 71.98 0.69 -4.08 16 2 C -0.09 -4.36 5.57 30.59 0.17 -4.19 16 3 C 0.23 11.34 2.10 44.17 0.09 11.43 16 4 H -0.04 -2.00 6.91 -2.38 -0.02 -2.02 16 5 C -0.52 -27.44 7.12 25.60 0.18 -27.26 16 6 H 0.06 3.01 7.58 -2.91 -0.02 2.98 16 7 C 0.02 0.89 5.30 84.65 0.45 1.34 16 8 N -0.92 -53.18 11.35 21.45 0.24 -52.94 16 9 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.67 -26.06 4.86 -473.30 -2.30 -28.36 16 14 C 0.09 2.95 2.40 44.92 0.11 3.06 16 15 H 0.05 1.80 7.27 -2.39 -0.02 1.79 16 16 C -0.17 -5.11 9.15 71.98 0.66 -4.45 16 17 C -0.06 -1.57 5.02 29.85 0.15 -1.42 16 18 C -0.06 -1.76 4.96 -19.83 -0.10 -1.86 16 19 C -0.13 -3.50 9.68 22.24 0.22 -3.29 16 20 C -0.12 -3.21 9.43 22.48 0.21 -3.00 16 21 C -0.07 -2.01 5.88 -20.04 -0.12 -2.12 16 22 C -0.06 -1.44 5.88 -20.04 -0.12 -1.56 16 23 C -0.13 -3.10 9.43 22.48 0.21 -2.88 16 24 C -0.12 -2.44 10.03 22.24 0.22 -2.22 16 25 C -0.13 -2.28 10.04 22.31 0.22 -2.05 16 26 C -0.12 -2.28 10.03 22.24 0.22 -2.05 16 27 C -0.13 -2.86 9.43 22.48 0.21 -2.65 16 28 C -0.12 -3.49 9.35 22.48 0.21 -3.28 16 29 C -0.09 -2.74 8.10 22.24 0.18 -2.56 16 30 H 0.03 1.69 6.98 -2.38 -0.02 1.68 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 2.66 6.49 -2.39 -0.02 2.64 16 33 H 0.05 2.71 6.15 -2.38 -0.01 2.69 16 34 H 0.01 0.45 7.54 -2.39 -0.02 0.43 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.33 12.68 7.96 -89.69 -0.71 11.97 16 37 H 0.03 1.04 7.25 -2.39 -0.02 1.02 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 41 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 42 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 43 H 0.13 2.95 6.21 -2.91 -0.02 2.93 16 44 H 0.13 2.81 6.21 -2.91 -0.02 2.79 16 45 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 46 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 47 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 48 H 0.13 2.56 6.21 -2.91 -0.02 2.54 16 49 H 0.13 3.27 6.21 -2.91 -0.02 3.25 16 50 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -62.31 393.65 4.26 -58.05 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.21 Total: 32.73 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 4.07 Total: -55.09 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -2.06 Total: -81.30 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.31 4.26 -58.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652111332.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.163 kcal (2) G-P(sol) polarization free energy of solvation -62.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds