Wall clock time and date at job start Tue Mar 31 2020 13:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32986 * 120.00113 * 2 1 4 4 C 1.50697 * 120.00263 * 359.97438 * 3 2 1 5 5 C 1.47109 * 119.99587 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00310 * 359.97438 * 5 3 2 7 7 N 1.34781 * 119.99530 * 180.02562 * 5 3 2 8 8 C 1.46503 * 119.99442 * 179.97438 * 7 5 3 9 9 H 1.08999 * 110.64588 * 323.29902 * 8 7 5 10 10 C 1.54595 * 110.72296 * 86.45520 * 8 7 5 11 11 C 1.53992 * 105.14042 * 140.49028 * 10 8 7 12 12 N 1.47896 * 107.05859 * 1.22377 * 11 10 8 13 13 C 1.46895 * 111.00235 * 214.15549 * 12 11 10 14 14 C 1.50702 * 109.47288 * 302.99496 * 13 12 11 15 15 O 1.21295 * 119.99746 * 354.33595 * 14 13 12 16 16 N 1.34777 * 120.00442 * 174.34224 * 14 13 12 17 17 C 1.37095 * 120.00131 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00234 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00021 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46783 * 60.00023 * 21 19 17 23 23 H 1.48496 * 109.47352 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47438 * 300.00182 * 21 19 17 25 25 C 1.48534 * 105.81963 * 334.66972 * 12 11 10 26 26 H 1.08997 * 110.66844 * 280.77167 * 25 12 11 27 27 C 1.53004 * 110.66950 * 157.64144 * 25 12 11 28 28 C 1.53003 * 109.47005 * 65.73489 * 27 25 12 29 29 H 1.08999 * 109.46584 * 59.99879 * 1 2 3 30 30 H 1.08996 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46645 * 300.00761 * 1 2 3 32 32 H 1.08001 * 119.99310 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.47050 * 270.00247 * 4 3 2 34 34 H 1.08999 * 109.47124 * 30.00282 * 4 3 2 35 35 H 1.09005 * 109.47290 * 149.99901 * 4 3 2 36 36 H 0.96994 * 120.00397 * 359.97438 * 7 5 3 37 37 H 1.08994 * 110.31252 * 21.57482 * 10 8 7 38 38 H 1.09003 * 110.30977 * 259.40922 * 10 8 7 39 39 H 1.09003 * 109.92002 * 241.86794 * 11 10 8 40 40 H 1.09009 * 109.91997 * 120.57485 * 11 10 8 41 41 H 1.08998 * 109.47462 * 182.99386 * 13 12 11 42 42 H 1.08997 * 109.47141 * 62.99328 * 13 12 11 43 43 H 0.97005 * 119.99536 * 359.97438 * 16 14 13 44 44 H 0.96998 * 120.00531 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.47623 * 185.73515 * 27 25 12 46 46 H 1.09000 * 109.47159 * 305.73905 * 27 25 12 47 47 H 1.09003 * 109.47366 * 280.52060 * 28 27 25 48 48 H 1.08996 * 109.46981 * 40.51384 * 28 27 25 49 49 H 1.09000 * 109.47041 * 160.52238 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6431 1.1515 0.0006 6 8 4.2511 0.0983 0.0015 7 7 4.3170 2.3188 0.0011 8 6 5.7820 2.3186 0.0022 9 1 6.1658 1.5008 0.6121 10 6 6.3302 2.2292 -1.4405 11 6 7.5453 3.1748 -1.4685 12 7 7.6881 3.7379 -0.1084 13 6 8.1816 5.1205 -0.1603 14 6 9.4921 5.1586 -0.9034 15 8 10.0194 4.1249 -1.2565 16 7 10.0785 6.3413 -1.1755 17 6 11.2704 6.3759 -1.8520 18 1 11.7398 5.4555 -2.1665 19 6 11.8746 7.5952 -2.1331 20 7 11.3037 8.7151 -1.7500 21 14 13.4990 7.6424 -3.0542 22 1 13.3307 7.0097 -4.3871 23 1 13.9298 9.0531 -3.2262 24 1 14.5281 6.9018 -2.2812 25 6 6.3339 3.6786 0.4987 26 1 5.7144 4.4998 0.1384 27 6 6.4253 3.6991 2.0259 28 6 6.9831 5.0477 2.4854 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 2.0469 -0.9354 -0.0004 33 1 1.2373 2.7712 -1.0283 34 1 0.4660 2.3267 0.5129 35 1 2.0075 3.2166 0.5133 36 1 3.8321 3.1588 0.0007 37 1 5.5756 2.5617 -2.1533 38 1 6.6399 1.2084 -1.6650 39 1 7.3751 3.9770 -2.1866 40 1 8.4433 2.6177 -1.7359 41 1 8.3281 5.4924 0.8538 42 1 7.4536 5.7471 -0.6754 43 1 9.6567 7.1680 -0.8934 44 1 11.7252 9.5664 -1.9465 45 1 5.4326 3.5525 2.4514 46 1 7.0859 2.8995 2.3611 47 1 8.0664 5.0531 2.3645 48 1 6.5466 5.8452 1.8842 49 1 6.7338 5.2055 3.5347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691963993.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:58 Heat of formation + Delta-G solvation = -55.805538 kcal Electronic energy + Delta-G solvation = -27845.472810 eV Core-core repulsion = 24000.658401 eV Total energy + Delta-G solvation = -3844.814409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.40200 -39.19095 -37.64541 -35.80954 -34.60327 -33.90339 -33.19404 -31.39616 -30.95970 -29.49959 -27.74008 -26.70394 -26.19018 -24.35242 -22.78559 -22.19666 -20.69798 -20.33191 -19.07378 -18.67382 -17.85313 -17.29306 -16.74928 -15.82358 -15.61275 -15.29108 -15.11214 -14.67070 -14.36396 -14.02748 -13.96650 -13.92000 -13.74491 -13.36165 -13.13015 -13.01791 -12.92699 -12.89217 -12.65554 -12.43335 -12.27620 -12.20978 -11.63514 -11.57190 -11.46460 -11.25982 -11.15882 -11.03467 -10.84919 -10.51669 -10.44113 -10.31555 -10.21047 -10.01247 -9.47788 -9.41790 -9.10353 -8.39565 -8.01023 -7.92343 -6.41325 -3.81973 1.10178 2.96945 3.10093 3.20384 3.25934 3.30585 3.91620 4.06435 4.24373 4.41109 4.52056 4.55036 4.68542 4.80472 4.87798 5.05450 5.08762 5.13180 5.22312 5.24399 5.25147 5.27087 5.31727 5.40383 5.41642 5.45822 5.57080 5.63499 5.71611 5.78539 5.82394 5.95518 6.01879 6.06421 6.08910 6.18515 6.21552 6.25628 6.29028 6.40379 6.44059 6.62432 7.20943 7.24524 7.38153 7.55446 8.06413 8.09248 8.62254 9.18574 9.54669 10.06704 10.76367 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.002337 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.888048 B =11976.217703 C =12302.899702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.192 4.192 4 C -0.118 4.118 5 C 0.554 3.446 6 O -0.542 6.542 7 N -0.717 5.717 8 C 0.147 3.853 9 H 0.103 0.897 10 C -0.142 4.142 11 C 0.048 3.952 12 N -0.482 5.482 13 C 0.025 3.975 14 C 0.442 3.558 15 O -0.578 6.578 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.058 3.942 26 H 0.054 0.946 27 C -0.106 4.106 28 C -0.158 4.158 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.729 -8.266 6.009 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.195 4.195 4 C -0.175 4.175 5 C 0.342 3.658 6 O -0.420 6.420 7 N -0.368 5.368 8 C 0.042 3.958 9 H 0.121 0.879 10 C -0.182 4.182 11 C -0.079 4.079 12 N -0.206 5.206 13 C -0.106 4.106 14 C 0.227 3.773 15 O -0.462 6.462 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.052 4.052 26 H 0.072 0.928 27 C -0.144 4.144 28 C -0.215 4.215 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.453 -9.780 6.045 24.340 hybrid contribution -0.181 1.711 -0.866 1.926 sum -21.634 -8.069 5.179 23.663 Atomic orbital electron populations 1.20993 0.92129 1.03075 1.02560 1.23579 0.96238 0.98004 0.91703 1.21441 0.92731 0.96808 1.08509 1.20829 1.00111 0.94013 1.02550 1.18378 0.87654 0.83705 0.76051 1.90797 1.70068 1.31187 1.49959 1.45942 1.07104 1.08578 1.75220 1.21891 0.78341 0.98479 0.97113 0.87869 1.22887 0.97777 1.01320 0.96190 1.22840 0.98387 0.97251 0.89467 1.64486 1.19877 1.18069 1.18196 1.22473 0.96298 0.89481 1.02375 1.19751 0.87452 0.84724 0.85374 1.90512 1.66036 1.32725 1.56911 1.41848 1.21206 1.06518 1.50535 1.19646 0.97468 0.94319 1.31355 0.87980 1.25253 0.99828 0.94732 0.98145 1.69599 1.40062 0.97742 1.46995 0.85922 0.81499 0.76995 0.79833 1.19948 1.21005 1.19886 1.23069 0.90852 0.95346 0.95889 0.92801 1.21426 1.00951 0.98875 0.93130 1.22004 1.02158 0.96785 1.00511 0.90759 0.91397 0.90645 0.85588 0.90907 0.90879 0.91749 0.76599 0.91613 0.90516 0.94082 0.88098 0.87738 0.93698 0.77546 0.91856 0.92000 0.90708 0.91268 0.92829 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.63 8.91 36.01 0.32 -0.31 16 2 C -0.08 -0.60 9.84 -36.13 -0.36 -0.96 16 3 C -0.19 -1.67 6.00 -102.85 -0.62 -2.29 16 4 C -0.12 -0.66 9.14 36.00 0.33 -0.33 16 5 C 0.55 6.63 7.75 -12.66 -0.10 6.53 16 6 O -0.54 -8.64 15.94 5.27 0.08 -8.55 16 7 N -0.72 -7.48 5.09 -53.18 -0.27 -7.75 16 8 C 0.15 1.87 2.78 -66.07 -0.18 1.69 16 9 H 0.10 1.52 7.60 -51.93 -0.39 1.12 16 10 C -0.14 -2.00 6.67 -25.38 -0.17 -2.17 16 11 C 0.05 0.82 5.31 -2.76 -0.01 0.81 16 12 N -0.48 -7.97 4.84 -224.06 -1.08 -9.06 16 13 C 0.02 0.44 4.71 -4.98 -0.02 0.42 16 14 C 0.44 10.37 7.35 -10.98 -0.08 10.29 16 15 O -0.58 -15.50 13.94 5.54 0.08 -15.42 16 16 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 21 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.06 0.73 2.08 -65.78 -0.14 0.59 16 26 H 0.05 0.62 7.78 -51.93 -0.40 0.22 16 27 C -0.11 -1.20 5.69 -26.73 -0.15 -1.35 16 28 C -0.16 -1.76 8.35 37.16 0.31 -1.45 16 29 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.30 7.40 -51.93 -0.38 -0.09 16 32 H 0.13 1.17 7.49 -52.49 -0.39 0.78 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.32 6.49 -51.93 -0.34 -0.02 16 35 H 0.06 0.32 6.70 -51.93 -0.35 -0.03 16 36 H 0.40 3.13 6.64 -40.82 -0.27 2.86 16 37 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.04 0.72 7.69 -51.93 -0.40 0.32 16 40 H 0.10 2.01 6.95 -51.92 -0.36 1.65 16 41 H 0.10 1.69 4.41 -51.93 -0.23 1.47 16 42 H 0.05 0.73 7.99 -51.93 -0.41 0.32 16 43 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 0.90 6.28 -51.93 -0.33 0.58 16 48 H 0.05 0.57 7.62 -51.93 -0.40 0.17 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -32.83 388.17 -8.68 -41.51 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.87 Total: 11.87 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.11 Total: 3.51 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.69 Total: -54.85 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.16 Total: -23.97 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.83 -8.68 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691963993.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.300 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds