Wall clock time and date at job start Tue Mar 31 2020 13:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32986 * 120.00113 * 2 1 4 4 C 1.50697 * 120.00263 * 359.97438 * 3 2 1 5 5 C 1.47109 * 119.99587 * 179.97438 * 3 2 1 6 6 O 1.21610 * 120.00310 * 359.97438 * 5 3 2 7 7 N 1.34781 * 119.99530 * 180.02562 * 5 3 2 8 8 C 1.46503 * 119.99442 * 179.97438 * 7 5 3 9 9 H 1.08999 * 110.64588 * 323.29902 * 8 7 5 10 10 C 1.54595 * 110.72296 * 86.45520 * 8 7 5 11 11 C 1.53992 * 105.14042 * 140.49028 * 10 8 7 12 12 N 1.47896 * 107.05859 * 1.22377 * 11 10 8 13 13 C 1.46895 * 111.00235 * 214.15549 * 12 11 10 14 14 C 1.50702 * 109.47288 * 302.99496 * 13 12 11 15 15 O 1.21295 * 119.99746 * 354.33595 * 14 13 12 16 16 N 1.34777 * 120.00442 * 174.34224 * 14 13 12 17 17 C 1.37095 * 120.00131 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00234 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00021 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00122 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46783 * 60.00023 * 21 19 17 23 23 H 1.48496 * 109.47352 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47438 * 300.00182 * 21 19 17 25 25 C 1.48534 * 105.81963 * 334.66972 * 12 11 10 26 26 H 1.08997 * 110.66844 * 280.77167 * 25 12 11 27 27 C 1.53004 * 110.66950 * 157.64144 * 25 12 11 28 28 C 1.53003 * 109.47005 * 65.73489 * 27 25 12 29 29 H 1.08999 * 109.46584 * 59.99879 * 1 2 3 30 30 H 1.08996 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46645 * 300.00761 * 1 2 3 32 32 H 1.08001 * 119.99310 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.47050 * 270.00247 * 4 3 2 34 34 H 1.08999 * 109.47124 * 30.00282 * 4 3 2 35 35 H 1.09005 * 109.47290 * 149.99901 * 4 3 2 36 36 H 0.96994 * 120.00397 * 359.97438 * 7 5 3 37 37 H 1.08994 * 110.31252 * 21.57482 * 10 8 7 38 38 H 1.09003 * 110.30977 * 259.40922 * 10 8 7 39 39 H 1.09003 * 109.92002 * 241.86794 * 11 10 8 40 40 H 1.09009 * 109.91997 * 120.57485 * 11 10 8 41 41 H 1.08998 * 109.47462 * 182.99386 * 13 12 11 42 42 H 1.08997 * 109.47141 * 62.99328 * 13 12 11 43 43 H 0.97005 * 119.99536 * 359.97438 * 16 14 13 44 44 H 0.96998 * 120.00531 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.47623 * 185.73515 * 27 25 12 46 46 H 1.09000 * 109.47159 * 305.73905 * 27 25 12 47 47 H 1.09003 * 109.47366 * 280.52060 * 28 27 25 48 48 H 1.08996 * 109.46981 * 40.51384 * 28 27 25 49 49 H 1.09000 * 109.47041 * 160.52238 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6431 1.1515 0.0006 6 8 4.2511 0.0983 0.0015 7 7 4.3170 2.3188 0.0011 8 6 5.7820 2.3186 0.0022 9 1 6.1658 1.5008 0.6121 10 6 6.3302 2.2292 -1.4405 11 6 7.5453 3.1748 -1.4685 12 7 7.6881 3.7379 -0.1084 13 6 8.1816 5.1205 -0.1603 14 6 9.4921 5.1586 -0.9034 15 8 10.0194 4.1249 -1.2565 16 7 10.0785 6.3413 -1.1755 17 6 11.2704 6.3759 -1.8520 18 1 11.7398 5.4555 -2.1665 19 6 11.8746 7.5952 -2.1331 20 7 11.3037 8.7151 -1.7500 21 14 13.4990 7.6424 -3.0542 22 1 13.3307 7.0097 -4.3871 23 1 13.9298 9.0531 -3.2262 24 1 14.5281 6.9018 -2.2812 25 6 6.3339 3.6786 0.4987 26 1 5.7144 4.4998 0.1384 27 6 6.4253 3.6991 2.0259 28 6 6.9831 5.0477 2.4854 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 2.0469 -0.9354 -0.0004 33 1 1.2373 2.7712 -1.0283 34 1 0.4660 2.3267 0.5129 35 1 2.0075 3.2166 0.5133 36 1 3.8321 3.1588 0.0007 37 1 5.5756 2.5617 -2.1533 38 1 6.6399 1.2084 -1.6650 39 1 7.3751 3.9770 -2.1866 40 1 8.4433 2.6177 -1.7359 41 1 8.3281 5.4924 0.8538 42 1 7.4536 5.7471 -0.6754 43 1 9.6567 7.1680 -0.8934 44 1 11.7252 9.5664 -1.9465 45 1 5.4326 3.5525 2.4514 46 1 7.0859 2.8995 2.3611 47 1 8.0664 5.0531 2.3645 48 1 6.5466 5.8452 1.8842 49 1 6.7338 5.2055 3.5347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691963993.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:57 Heat of formation + Delta-G solvation = -79.888506 kcal Electronic energy + Delta-G solvation = -27846.517126 eV Core-core repulsion = 24000.658401 eV Total energy + Delta-G solvation = -3845.858725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.49074 -40.50372 -39.27659 -36.46433 -36.06401 -35.52389 -34.28209 -33.30146 -32.26970 -30.12330 -28.86367 -27.97183 -27.00063 -26.04717 -23.91861 -23.19680 -21.78295 -21.51062 -20.82830 -19.84208 -19.50775 -18.02113 -17.86881 -17.54699 -16.83250 -16.52099 -16.37300 -16.00659 -15.74402 -15.57230 -15.50101 -14.66441 -14.52510 -14.45332 -14.29499 -14.00807 -13.95517 -13.86545 -13.55887 -13.47128 -13.33994 -13.31011 -12.96972 -12.81663 -12.66775 -12.49751 -12.42214 -12.27679 -12.15228 -12.13112 -11.84888 -11.65417 -11.55361 -11.40969 -10.96677 -10.30291 -10.16962 -10.00956 -9.87322 -9.36335 -8.46639 -5.94937 0.40108 1.38785 1.40801 1.51394 2.03106 2.05454 2.25124 2.29650 2.87153 3.19862 3.26143 3.37366 3.75202 3.77246 3.97060 4.02374 4.07446 4.17910 4.27605 4.30283 4.33775 4.41836 4.42829 4.48669 4.54320 4.61870 4.70126 4.77432 4.84876 4.86108 4.92565 4.97847 5.03336 5.09052 5.13642 5.18124 5.19801 5.31516 5.39774 5.40885 5.47112 5.52604 5.67534 5.83161 5.95219 6.09348 6.54289 6.60851 7.13045 7.21629 7.56012 8.12407 8.70468 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.002337 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.888048 B =11976.217703 C =12302.899702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.204 4.204 4 C -0.114 4.114 5 C 0.547 3.453 6 O -0.592 6.592 7 N -0.701 5.701 8 C 0.156 3.844 9 H 0.081 0.919 10 C -0.133 4.133 11 C 0.054 3.946 12 N -0.501 5.501 13 C 0.039 3.961 14 C 0.437 3.563 15 O -0.617 6.617 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.273 1.273 25 C 0.066 3.934 26 H 0.080 0.920 27 C -0.102 4.102 28 C -0.156 4.156 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.060 0.940 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.466 -6.701 6.701 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 C -0.207 4.207 4 C -0.171 4.171 5 C 0.338 3.662 6 O -0.474 6.474 7 N -0.353 5.353 8 C 0.050 3.950 9 H 0.099 0.901 10 C -0.172 4.172 11 C -0.074 4.074 12 N -0.226 5.226 13 C -0.091 4.091 14 C 0.225 3.775 15 O -0.503 6.503 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.199 1.199 25 C -0.043 4.043 26 H 0.097 0.903 27 C -0.140 4.140 28 C -0.213 4.213 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.235 -8.167 6.754 26.451 hybrid contribution 0.644 1.129 -1.058 1.676 sum -23.591 -7.038 5.697 25.269 Atomic orbital electron populations 1.21041 0.89374 1.04048 1.03793 1.23788 0.98167 0.96978 0.90367 1.21502 0.90687 0.98733 1.09729 1.20882 1.00535 0.92160 1.03504 1.19022 0.89164 0.83115 0.74916 1.90777 1.71326 1.32935 1.52318 1.45742 1.05903 1.09195 1.74486 1.21590 0.79808 0.97997 0.95594 0.90087 1.22773 0.96941 0.99775 0.97717 1.22619 0.97867 0.97128 0.89798 1.64412 1.22879 1.17438 1.17921 1.22370 0.93386 0.90742 1.02637 1.20801 0.88853 0.83537 0.84321 1.90497 1.67589 1.33987 1.58211 1.41900 1.20922 1.07298 1.50897 1.19592 0.99166 0.93993 1.33462 0.90509 1.26002 1.02727 0.94055 0.98415 1.69654 1.41120 0.98091 1.47083 0.85018 0.77471 0.77613 0.78410 1.19833 1.19361 1.19872 1.23137 0.88825 0.95745 0.96577 0.90260 1.21430 1.02069 0.98582 0.91947 1.21977 1.00569 0.96794 1.02002 0.89452 0.90746 0.89046 0.87864 0.90043 0.89120 0.90833 0.74599 0.89992 0.91894 0.94840 0.92144 0.85702 0.91326 0.76997 0.91288 0.89403 0.92449 0.93584 0.91704 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 8.91 71.24 0.63 -0.24 16 2 C -0.07 -1.08 9.84 24.52 0.24 -0.83 16 3 C -0.20 -3.18 6.00 -18.70 -0.11 -3.29 16 4 C -0.11 -0.87 9.14 71.23 0.65 -0.22 16 5 C 0.55 12.70 7.75 86.57 0.67 13.37 16 6 O -0.59 -19.40 15.94 -4.06 -0.06 -19.46 16 7 N -0.70 -13.37 5.09 -440.42 -2.24 -15.61 16 8 C 0.16 3.89 2.78 46.20 0.13 4.01 16 9 H 0.08 2.43 7.60 -2.39 -0.02 2.42 16 10 C -0.13 -3.77 6.67 31.47 0.21 -3.56 16 11 C 0.05 1.90 5.31 86.45 0.46 2.36 16 12 N -0.50 -16.53 4.84 -862.80 -4.17 -20.70 16 13 C 0.04 1.37 4.71 85.56 0.40 1.77 16 14 C 0.44 21.04 7.35 87.66 0.64 21.69 16 15 O -0.62 -34.62 13.94 -3.08 -0.04 -34.66 16 16 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 17 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 18 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 21 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.07 1.53 2.08 45.26 0.09 1.62 16 26 H 0.08 1.52 7.78 -2.39 -0.02 1.50 16 27 C -0.10 -2.10 5.69 30.60 0.17 -1.93 16 28 C -0.16 -3.09 8.35 71.98 0.60 -2.49 16 29 H 0.09 0.43 8.10 -2.39 -0.02 0.41 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.09 0.39 7.40 -2.39 -0.02 0.37 16 32 H 0.10 1.97 7.49 -2.91 -0.02 1.95 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.40 6.49 -2.39 -0.02 0.38 16 35 H 0.07 0.42 6.70 -2.38 -0.02 0.41 16 36 H 0.42 5.16 6.64 -92.71 -0.62 4.54 16 37 H 0.08 2.05 8.05 -2.39 -0.02 2.03 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.03 1.20 7.69 -2.39 -0.02 1.18 16 40 H 0.06 2.60 6.95 -2.38 -0.02 2.58 16 41 H 0.13 3.87 4.41 -2.39 -0.01 3.86 16 42 H 0.07 2.08 7.99 -2.39 -0.02 2.06 16 43 H 0.40 19.25 7.90 -92.70 -0.73 18.52 16 44 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.13 6.28 -2.39 -0.01 1.11 16 48 H 0.06 1.14 7.62 -2.39 -0.02 1.12 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.85 388.17 -0.14 -74.99 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.38 Total: 36.50 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.08 Total: 13.89 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -7.76 Total: -116.55 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -0.11 Total: -54.12 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.85 -0.14 -74.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691963993.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.901 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds