Wall clock time and date at job start Tue Mar 31 2020 15:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.63690 * 2 1 4 4 C 1.54332 * 110.99790 * 236.91938 * 2 1 3 5 5 N 1.47028 * 107.26302 * 219.59814 * 4 2 1 6 6 C 1.34774 * 125.64488 * 178.85096 * 5 4 2 7 7 O 1.21346 * 120.00366 * 359.72289 * 6 5 4 8 8 C 1.49452 * 119.99615 * 179.71933 * 6 5 4 9 9 O 1.21342 * 120.00078 * 353.12572 * 8 6 5 10 10 N 1.34779 * 119.99707 * 173.13027 * 8 6 5 11 11 C 1.46922 * 120.63250 * 351.09198 * 10 8 6 12 12 C 1.52765 * 109.00679 * 233.58726 * 11 10 8 13 13 C 1.53044 * 109.38247 * 305.58392 * 12 11 10 14 14 C 1.52995 * 109.46066 * 181.26437 * 13 12 11 15 15 C 1.50702 * 109.47306 * 64.93248 * 14 13 12 16 16 H 1.08004 * 119.99877 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99708 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00498 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99692 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47052 * 89.99393 * 19 17 15 21 21 H 1.48495 * 109.47351 * 209.99589 * 19 17 15 22 22 H 1.48501 * 109.47199 * 329.99621 * 19 17 15 23 23 C 1.53035 * 109.53503 * 61.24086 * 13 12 11 24 24 C 1.46929 * 120.62971 * 171.37143 * 10 8 6 25 25 C 1.47422 * 108.70156 * 358.58899 * 5 4 2 26 26 C 1.54908 * 104.83270 * 24.35671 * 25 5 4 27 27 H 1.09003 * 111.00594 * 204.91423 * 26 25 5 28 28 N 1.46903 * 111.00714 * 81.06434 * 26 25 5 29 29 H 1.09003 * 109.46794 * 296.85719 * 1 2 3 30 30 H 1.08995 * 109.47468 * 56.85956 * 1 2 3 31 31 H 1.09001 * 109.47192 * 176.86676 * 1 2 3 32 32 H 1.08998 * 109.99028 * 100.13195 * 4 2 1 33 33 H 1.09000 * 109.78222 * 338.95928 * 4 2 1 34 34 H 1.08999 * 109.58649 * 353.41642 * 11 10 8 35 35 H 1.08995 * 109.59282 * 113.84570 * 11 10 8 36 36 H 1.09004 * 109.56122 * 185.55405 * 12 11 10 37 37 H 1.08997 * 109.36191 * 65.49736 * 12 11 10 38 38 H 1.08997 * 109.45697 * 301.22338 * 13 12 11 39 39 H 1.08993 * 109.47105 * 184.93247 * 14 13 12 40 40 H 1.09002 * 109.46861 * 304.93288 * 14 13 12 41 41 H 0.96997 * 120.00248 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.49447 * 178.68111 * 23 13 12 43 43 H 1.09001 * 109.52443 * 58.60656 * 23 13 12 44 44 H 1.09001 * 109.58725 * 246.15331 * 24 10 8 45 45 H 1.09002 * 109.58582 * 6.43630 * 24 10 8 46 46 H 1.09000 * 110.36406 * 143.19223 * 25 5 4 47 47 H 1.09001 * 110.36969 * 265.40109 * 25 5 4 48 48 H 1.00902 * 111.00085 * 61.44978 * 28 26 25 49 49 H 1.00895 * 110.99783 * 185.40804 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5470 -0.7353 6 6 4.0004 -2.3785 -1.4844 7 8 3.7295 -2.5528 -2.6543 8 6 5.1668 -3.0860 -0.8740 9 8 5.5140 -2.8190 0.2576 10 7 5.8331 -4.0205 -1.5806 11 6 5.3141 -4.4949 -2.8706 12 6 5.2166 -6.0191 -2.8375 13 6 6.5762 -6.6067 -2.4523 14 6 6.4889 -8.1341 -2.4493 15 6 6.2230 -8.6249 -3.8491 16 1 6.1255 -7.9179 -4.6598 17 6 6.1031 -9.9763 -4.0947 18 7 6.2213 -10.8371 -3.1075 19 14 5.7727 -10.5846 -5.8298 20 1 7.0632 -10.8253 -6.5240 21 1 4.9983 -11.8503 -5.7716 22 1 4.9940 -9.5616 -6.5731 23 6 6.9691 -6.1156 -1.0571 24 6 7.0893 -4.5885 -1.0726 25 6 3.4652 -1.2446 0.6913 26 6 2.0790 -0.7934 1.2151 27 1 2.1820 -0.1489 2.0882 28 7 1.2271 -1.9517 1.5161 29 1 -0.3633 0.4643 0.9169 30 1 -0.3634 0.5618 -0.8604 31 1 -0.3633 -1.0261 -0.0562 32 1 2.3848 -0.0962 -1.9950 33 1 1.3215 -1.4702 -1.5823 34 1 4.3253 -4.0707 -3.0449 35 1 5.9900 -4.1920 -3.6703 36 1 4.9266 -6.3877 -3.8215 37 1 4.4697 -6.3175 -2.1020 38 1 7.3275 -6.2875 -3.1746 39 1 7.4300 -8.5511 -2.0908 40 1 5.6780 -8.4504 -1.7932 41 1 6.1373 -11.7879 -3.2804 42 1 7.9265 -6.5531 -0.7738 43 1 6.2061 -6.4133 -0.3379 44 1 7.9131 -4.2935 -1.7227 45 1 7.2728 -4.2240 -0.0619 46 1 3.7993 -2.1363 1.2218 47 1 4.1945 -0.4422 0.8030 48 1 1.6380 -2.5250 2.2377 49 1 0.2963 -1.6590 1.7728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572960473.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:06 Heat of formation + Delta-G solvation = -60.127949 kcal Electronic energy + Delta-G solvation = -28419.693200 eV Core-core repulsion = 24574.691358 eV Total energy + Delta-G solvation = -3845.001843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01360 -39.48475 -38.01806 -37.40338 -34.31967 -33.65198 -32.18796 -32.06347 -30.72872 -28.55614 -28.13910 -27.28693 -25.22596 -23.69557 -22.93634 -22.28384 -21.12121 -20.09932 -19.82183 -18.79691 -17.35425 -17.04801 -16.64885 -16.22881 -16.12541 -15.78663 -15.65394 -14.54786 -14.51089 -14.29965 -14.03294 -13.66754 -13.56781 -13.45467 -13.37206 -13.04339 -12.95830 -12.78811 -12.71080 -12.42098 -12.20865 -11.79532 -11.52893 -11.43054 -11.28780 -11.15560 -10.97559 -10.87591 -10.68098 -10.66342 -10.37554 -10.06818 -9.70151 -9.33040 -9.10004 -9.02618 -8.91797 -8.74358 -8.38285 -8.30562 -5.96409 -3.97991 1.49195 2.26962 3.24842 3.34288 3.40798 3.41955 3.44137 3.92797 4.03377 4.19666 4.36647 4.48935 4.51691 4.93369 5.00264 5.11915 5.26167 5.28927 5.31589 5.39071 5.42989 5.46828 5.50889 5.53210 5.60116 5.67550 5.69310 5.74394 5.90747 5.91784 5.97245 6.06520 6.28541 6.37823 6.43592 6.57415 6.66743 6.75119 7.01269 7.02890 7.06119 7.09312 7.17399 7.41334 7.70562 7.72031 7.85518 8.03580 8.06726 8.46520 9.08522 9.65712 11.14946 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.002690 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.335956 B =10407.277823 C =10916.239431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.087 0.913 4 C 0.119 3.881 5 N -0.581 5.581 6 C 0.522 3.478 7 O -0.511 6.511 8 C 0.508 3.492 9 O -0.534 6.534 10 N -0.569 5.569 11 C 0.068 3.932 12 C -0.118 4.118 13 C -0.083 4.083 14 C 0.028 3.972 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.128 4.128 24 C 0.109 3.891 25 C 0.108 3.892 26 C 0.074 3.926 27 H 0.060 0.940 28 N -0.837 5.837 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.346 0.654 49 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 23.971 9.849 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.003 4.003 5 N -0.315 5.315 6 C 0.307 3.693 7 O -0.388 6.388 8 C 0.291 3.709 9 O -0.413 6.413 10 N -0.301 5.301 11 C -0.053 4.053 12 C -0.156 4.156 13 C -0.102 4.102 14 C -0.009 4.009 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.166 4.166 24 C -0.013 4.013 25 C -0.015 4.015 26 C -0.039 4.039 27 H 0.077 0.923 28 N -0.370 5.370 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.095 0.905 48 H 0.160 0.840 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.562 23.557 9.034 26.643 hybrid contribution -0.129 -0.168 -0.002 0.212 sum -8.691 23.389 9.032 26.536 Atomic orbital electron populations 1.21711 0.93457 1.03124 1.01821 1.22296 0.96951 0.98544 0.93945 0.89512 1.22022 0.87523 0.94468 0.96316 1.48062 1.28904 1.42869 1.11616 1.19947 0.83503 0.79935 0.85963 1.90543 1.70687 1.61551 1.16056 1.19831 0.84021 0.81362 0.85702 1.90662 1.67702 1.65668 1.17238 1.48068 1.23303 1.36816 1.21930 1.22891 1.03203 0.96643 0.82572 1.21843 0.98484 0.91996 1.03295 1.21229 0.95720 0.99535 0.93689 1.19119 0.97091 0.87674 0.97016 1.21252 1.48325 0.91612 0.94114 0.92548 1.25019 0.95586 0.97133 0.96756 1.69961 1.50637 1.01934 1.31078 0.86644 0.78246 0.78300 0.85121 1.20770 1.21335 1.19828 1.22015 1.02142 0.92705 0.99732 1.21837 0.84185 0.94975 1.00284 1.22620 0.95364 1.02661 0.80812 1.22588 0.93022 0.91732 0.96528 0.92262 1.58578 1.05875 1.21096 1.51481 0.92492 0.92217 0.90931 0.91340 0.90446 0.85299 0.91629 0.89547 0.92566 0.92314 0.96642 0.96649 0.93091 0.90941 0.91981 0.91228 0.89494 0.88174 0.90516 0.84013 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.21 37.16 0.31 -0.44 16 2 C -0.10 -0.63 3.44 -88.78 -0.31 -0.94 16 3 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.12 1.14 6.48 -3.06 -0.02 1.12 16 5 N -0.58 -6.95 3.33 -171.02 -0.57 -7.52 16 6 C 0.52 7.82 7.76 -11.59 -0.09 7.73 16 7 O -0.51 -8.52 13.52 5.50 0.07 -8.44 16 8 C 0.51 8.06 7.68 -11.58 -0.09 7.97 16 9 O -0.53 -8.69 13.33 5.50 0.07 -8.62 16 10 N -0.57 -9.17 2.98 -173.54 -0.52 -9.69 16 11 C 0.07 1.13 5.95 -3.93 -0.02 1.10 16 12 C -0.12 -2.25 5.17 -26.83 -0.14 -2.39 16 13 C -0.08 -1.68 2.10 -90.58 -0.19 -1.87 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.51 -14.31 8.39 -34.44 -0.29 -14.59 16 16 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.13 -2.20 5.36 -26.61 -0.14 -2.35 16 24 C 0.11 1.66 6.45 -3.71 -0.02 1.63 16 25 C 0.11 1.06 5.65 -2.53 -0.01 1.04 16 26 C 0.07 0.50 3.98 -65.56 -0.26 0.24 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 N -0.84 -5.80 8.73 -2.85 -0.02 -5.83 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.45 7.04 -51.93 -0.37 0.09 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 34 H 0.13 2.21 4.34 -54.65 -0.24 1.97 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.75 6.91 -51.93 -0.36 1.39 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 46 H 0.10 1.16 6.36 -51.93 -0.33 0.83 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.35 2.25 9.07 -39.29 -0.36 1.89 16 49 H 0.34 1.76 7.54 -39.29 -0.30 1.46 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -32.24 377.96 -9.19 -41.43 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.14 Total: 2.21 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.50 Total: 0.35 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.37 Total: -49.35 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.15 Total: -17.06 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.24 -9.19 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572960473.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.699 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds