Wall clock time and date at job start Tue Mar 31 2020 14:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.99754 * 2 1 4 4 C 1.54322 * 109.88197 * 121.09079 * 2 1 3 5 5 H 1.08997 * 110.72158 * 260.15170 * 4 2 1 6 6 N 1.46499 * 110.71983 * 23.25093 * 4 2 1 7 7 C 1.36933 * 119.99905 * 202.55450 * 6 4 2 8 8 H 1.08002 * 120.00500 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99945 * 179.72553 * 7 6 4 10 10 N 1.31621 * 119.99902 * 0.27183 * 9 7 6 11 11 Si 1.86795 * 120.00104 * 180.27544 * 9 7 6 12 12 H 1.48510 * 109.47283 * 89.99808 * 11 9 7 13 13 H 1.48501 * 109.47545 * 209.99782 * 11 9 7 14 14 H 1.48500 * 109.47223 * 330.00144 * 11 9 7 15 15 C 1.55161 * 103.09844 * 141.69924 * 4 2 1 16 16 C 1.54912 * 101.58402 * 324.41243 * 15 4 2 17 17 N 1.47425 * 104.83063 * 37.00813 * 16 15 4 18 18 C 1.34774 * 125.64727 * 155.91238 * 17 16 15 19 19 O 1.21345 * 119.99811 * 179.97438 * 18 17 16 20 20 C 1.49454 * 119.99969 * 359.97438 * 18 17 16 21 21 O 1.21348 * 120.00138 * 6.81509 * 20 18 17 22 22 N 1.34777 * 119.99767 * 186.82486 * 20 18 17 23 23 C 1.46921 * 120.63045 * 8.47336 * 22 20 18 24 24 C 1.53624 * 108.54259 * 126.37296 * 23 22 20 25 25 C 1.53042 * 109.24205 * 54.85339 * 24 23 22 26 26 C 1.52997 * 109.46209 * 178.49114 * 25 24 23 27 27 C 1.53035 * 109.53929 * 298.51305 * 25 24 23 28 28 C 1.46927 * 120.62696 * 188.75914 * 22 20 18 29 29 H 1.09002 * 109.46775 * 298.90361 * 1 2 3 30 30 H 1.08996 * 109.46907 * 58.90321 * 1 2 3 31 31 H 1.08996 * 109.46655 * 178.90585 * 1 2 3 32 32 H 0.97000 * 120.00272 * 22.55799 * 6 4 2 33 33 H 0.97001 * 119.99654 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00235 * 82.48765 * 15 4 2 35 35 H 1.09007 * 111.00381 * 206.33442 * 15 4 2 36 36 H 1.08993 * 110.36438 * 155.84876 * 16 15 4 37 37 H 1.09000 * 110.36451 * 278.16956 * 16 15 4 38 38 H 1.09008 * 109.58875 * 246.20133 * 23 22 20 39 39 H 1.08998 * 109.59063 * 6.62712 * 23 22 20 40 40 H 1.08994 * 109.63670 * 294.86365 * 24 23 22 41 41 H 1.09005 * 109.43462 * 174.71993 * 24 23 22 42 42 H 1.09005 * 109.44918 * 58.52540 * 25 24 23 43 43 H 1.09002 * 109.47398 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47147 * 300.06950 * 26 25 24 45 45 H 1.08995 * 109.47155 * 60.06860 * 26 25 24 46 46 H 1.08995 * 109.49883 * 301.41160 * 27 25 24 47 47 H 1.09004 * 109.50083 * 181.31681 * 27 25 24 48 48 H 1.09002 * 109.58612 * 353.36773 * 28 22 20 49 49 H 1.09002 * 109.58528 * 113.65489 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 1.2428 5 1 2.3500 -0.0459 2.0212 6 7 1.0472 -1.6854 1.7475 7 6 1.0906 -2.1004 3.0517 8 1 1.8679 -1.7381 3.7082 9 6 0.1325 -2.9829 3.5315 10 7 -0.8146 -3.4249 2.7313 11 14 0.1871 -3.5431 5.3126 12 1 -0.6109 -2.6111 6.1494 13 1 -0.3791 -4.9118 5.4188 14 1 1.5946 -3.5515 5.7859 15 6 3.2897 -1.5140 0.6969 16 6 2.8202 -1.8831 -0.7325 17 7 2.0353 -0.7197 -1.1840 18 6 1.8150 -0.3710 -2.4671 19 8 1.1501 0.6112 -2.7233 20 6 2.3895 -1.1941 -3.5744 21 8 2.9483 -2.2419 -3.3245 22 7 2.2873 -0.7724 -4.8504 23 6 1.7826 0.5732 -5.1559 24 6 2.8074 1.2879 -6.0498 25 6 3.0878 0.4270 -7.2836 26 6 4.0795 1.1514 -8.1960 27 6 3.6821 -0.9142 -6.8476 28 6 2.6725 -1.6519 -5.9625 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3632 -1.0275 -0.0196 32 1 0.3493 -2.0112 1.1578 33 1 -1.4838 -4.0418 3.0665 34 1 4.1668 -0.8676 0.6653 35 1 3.4871 -2.4092 1.2867 36 1 3.6789 -2.0380 -1.3856 37 1 2.1953 -2.7759 -0.7078 38 1 0.8290 0.4959 -5.6784 39 1 1.6500 1.1327 -4.2300 40 1 3.7331 1.4414 -5.4953 41 1 2.4059 2.2519 -6.3625 42 1 2.1573 0.2533 -7.8241 43 1 4.2791 0.5386 -9.0751 44 1 3.6564 2.1067 -8.5067 45 1 5.0103 1.3248 -7.6559 46 1 4.5996 -0.7400 -6.2855 47 1 3.9033 -1.5176 -7.7280 48 1 3.1273 -2.5609 -5.5688 49 1 1.7896 -1.9089 -6.5478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987142868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:59 Heat of formation + Delta-G solvation = -38.586878 kcal Electronic energy + Delta-G solvation = -28816.870732 eV Core-core repulsion = 24972.802980 eV Total energy + Delta-G solvation = -3844.067752 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97016 -39.34397 -37.79159 -37.56896 -34.35020 -33.73617 -31.58506 -31.36797 -30.80879 -29.06133 -28.61161 -25.34736 -25.14661 -23.60441 -23.56354 -22.93352 -21.57492 -20.45103 -19.40671 -18.74893 -17.49159 -17.01119 -16.79959 -16.36153 -15.62665 -15.29538 -14.98022 -14.60448 -14.49948 -14.33868 -14.01142 -13.89787 -13.59782 -13.33102 -13.17618 -13.02059 -12.97691 -12.53849 -12.24091 -12.18767 -12.09427 -11.79757 -11.48453 -11.41461 -11.25475 -11.17783 -11.00877 -10.99203 -10.76862 -10.69077 -10.61366 -10.42889 -10.21896 -10.03081 -9.62277 -9.01677 -8.95145 -8.82705 -8.42229 -7.03310 -5.81898 -3.11695 1.55241 2.34625 3.29584 3.41085 3.46391 3.48033 3.48296 4.26676 4.46258 4.49226 4.54245 4.55439 4.85388 5.04913 5.09365 5.15611 5.20597 5.25140 5.34450 5.36045 5.46195 5.51303 5.58164 5.60160 5.65418 5.68191 5.73324 5.73817 5.80809 5.83321 5.87181 5.90989 6.05427 6.13321 6.15985 6.33203 6.35495 6.41755 6.52606 6.59165 6.68996 6.81857 6.96233 7.06600 7.54471 7.66212 7.78531 8.14113 8.36138 9.47812 10.02482 10.37427 11.40314 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.002703 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.757734 B =10356.769155 C =10574.397932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 H 0.078 0.922 4 C 0.171 3.829 5 H 0.071 0.929 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.163 4.163 16 C 0.106 3.894 17 N -0.571 5.571 18 C 0.517 3.483 19 O -0.525 6.525 20 C 0.510 3.490 21 O -0.515 6.515 22 N -0.586 5.586 23 C 0.069 3.931 24 C -0.129 4.129 25 C -0.096 4.096 26 C -0.146 4.146 27 C -0.127 4.127 28 C 0.107 3.893 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.388 0.612 33 H 0.256 0.744 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.144 0.856 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 8.836 -19.907 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 H 0.096 0.904 4 C 0.059 3.941 5 H 0.089 0.911 6 N -0.357 5.357 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.204 4.204 16 C -0.016 4.016 17 N -0.303 5.303 18 C 0.301 3.699 19 O -0.405 6.405 20 C 0.293 3.707 21 O -0.391 6.391 22 N -0.320 5.320 23 C -0.053 4.053 24 C -0.167 4.167 25 C -0.114 4.114 26 C -0.204 4.204 27 C -0.165 4.165 28 C -0.015 4.015 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.876 8.732 -19.763 23.359 hybrid contribution -0.257 -0.618 0.574 0.882 sum 8.619 8.113 -19.189 22.546 Atomic orbital electron populations 1.21930 0.93742 1.03195 1.01946 1.22276 0.95737 0.95681 0.84174 0.90447 1.21212 0.89269 0.91758 0.91822 0.91098 1.42574 1.30982 1.51610 1.10488 1.19226 1.09646 1.21436 0.87168 0.90982 1.24755 0.97723 1.00146 0.98020 1.69663 1.17011 1.36421 1.34677 0.86185 0.77417 0.77796 0.84707 1.21715 1.21827 1.20724 1.23592 0.99055 1.02470 0.95277 1.22574 0.95445 0.87805 0.95761 1.48689 1.49218 1.28347 1.04088 1.19638 0.82087 0.85221 0.82978 1.90435 1.40645 1.27843 1.81625 1.20187 0.80344 0.86248 0.83878 1.90731 1.41334 1.24136 1.82855 1.47908 1.63298 1.16285 1.04547 1.22970 0.95782 0.82219 1.04302 1.22092 0.99923 0.98697 0.96024 1.21174 0.99096 0.95017 0.96154 1.21822 0.99182 1.00195 0.99153 1.21962 0.98740 0.96376 0.99448 1.21705 0.98414 0.94026 0.87332 0.91012 0.92594 0.91410 0.77501 0.93406 0.92082 0.89182 0.89762 0.90547 0.91552 0.83973 0.91671 0.90652 0.91017 0.92731 0.92612 0.92724 0.91405 0.90674 0.88772 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.48 37.16 0.32 -2.44 16 2 C 0.12 2.14 3.45 -66.70 -0.23 1.91 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.17 3.23 3.46 -66.10 -0.23 3.00 16 5 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 6 N -0.71 -16.86 4.61 -51.65 -0.24 -17.10 16 7 C -0.24 -6.42 9.97 -15.06 -0.15 -6.57 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 11 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C -0.16 -2.74 6.77 -24.58 -0.17 -2.91 16 16 C 0.11 1.81 5.94 -2.53 -0.02 1.79 16 17 N -0.57 -9.69 3.08 -163.17 -0.50 -10.19 16 18 C 0.52 8.53 7.57 -11.58 -0.09 8.44 16 19 O -0.53 -8.83 12.25 5.50 0.07 -8.76 16 20 C 0.51 7.85 7.68 -11.58 -0.09 7.77 16 21 O -0.52 -8.82 13.33 5.50 0.07 -8.75 16 22 N -0.59 -7.26 2.97 -173.01 -0.51 -7.78 16 23 C 0.07 0.74 6.01 -3.49 -0.02 0.72 16 24 C -0.13 -1.09 5.38 -26.39 -0.14 -1.24 16 25 C -0.10 -0.71 2.68 -90.58 -0.24 -0.95 16 26 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 27 C -0.13 -1.01 5.36 -26.61 -0.14 -1.15 16 28 C 0.11 1.08 6.44 -3.71 -0.02 1.05 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.99 6.93 -51.93 -0.36 0.63 16 31 H 0.07 1.41 6.21 -51.93 -0.32 1.09 16 32 H 0.39 9.92 5.58 -40.82 -0.23 9.69 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.08 1.38 6.36 -51.93 -0.33 1.05 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.14 1.83 4.31 -54.81 -0.24 1.60 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 1.05 7.01 -51.93 -0.36 0.69 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -29.63 376.80 -8.86 -38.49 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.15 Total: 9.79 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.98 Total: 8.48 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.53 Total: -61.75 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.14 Total: -17.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.63 -8.86 -38.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987142868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.097 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds