Wall clock time and date at job start Tue Mar 31 2020 14:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.99754 * 2 1 4 4 C 1.54322 * 109.88197 * 121.09079 * 2 1 3 5 5 H 1.08997 * 110.72158 * 260.15170 * 4 2 1 6 6 N 1.46499 * 110.71983 * 23.25093 * 4 2 1 7 7 C 1.36933 * 119.99905 * 202.55450 * 6 4 2 8 8 H 1.08002 * 120.00500 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99945 * 179.72553 * 7 6 4 10 10 N 1.31621 * 119.99902 * 0.27183 * 9 7 6 11 11 Si 1.86795 * 120.00104 * 180.27544 * 9 7 6 12 12 H 1.48510 * 109.47283 * 89.99808 * 11 9 7 13 13 H 1.48501 * 109.47545 * 209.99782 * 11 9 7 14 14 H 1.48500 * 109.47223 * 330.00144 * 11 9 7 15 15 C 1.55161 * 103.09844 * 141.69924 * 4 2 1 16 16 C 1.54912 * 101.58402 * 324.41243 * 15 4 2 17 17 N 1.47425 * 104.83063 * 37.00813 * 16 15 4 18 18 C 1.34774 * 125.64727 * 155.91238 * 17 16 15 19 19 O 1.21345 * 119.99811 * 179.97438 * 18 17 16 20 20 C 1.49454 * 119.99969 * 359.97438 * 18 17 16 21 21 O 1.21348 * 120.00138 * 6.81509 * 20 18 17 22 22 N 1.34777 * 119.99767 * 186.82486 * 20 18 17 23 23 C 1.46921 * 120.63045 * 8.47336 * 22 20 18 24 24 C 1.53624 * 108.54259 * 126.37296 * 23 22 20 25 25 C 1.53042 * 109.24205 * 54.85339 * 24 23 22 26 26 C 1.52997 * 109.46209 * 178.49114 * 25 24 23 27 27 C 1.53035 * 109.53929 * 298.51305 * 25 24 23 28 28 C 1.46927 * 120.62696 * 188.75914 * 22 20 18 29 29 H 1.09002 * 109.46775 * 298.90361 * 1 2 3 30 30 H 1.08996 * 109.46907 * 58.90321 * 1 2 3 31 31 H 1.08996 * 109.46655 * 178.90585 * 1 2 3 32 32 H 0.97000 * 120.00272 * 22.55799 * 6 4 2 33 33 H 0.97001 * 119.99654 * 179.97438 * 10 9 7 34 34 H 1.09001 * 111.00235 * 82.48765 * 15 4 2 35 35 H 1.09007 * 111.00381 * 206.33442 * 15 4 2 36 36 H 1.08993 * 110.36438 * 155.84876 * 16 15 4 37 37 H 1.09000 * 110.36451 * 278.16956 * 16 15 4 38 38 H 1.09008 * 109.58875 * 246.20133 * 23 22 20 39 39 H 1.08998 * 109.59063 * 6.62712 * 23 22 20 40 40 H 1.08994 * 109.63670 * 294.86365 * 24 23 22 41 41 H 1.09005 * 109.43462 * 174.71993 * 24 23 22 42 42 H 1.09005 * 109.44918 * 58.52540 * 25 24 23 43 43 H 1.09002 * 109.47398 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47147 * 300.06950 * 26 25 24 45 45 H 1.08995 * 109.47155 * 60.06860 * 26 25 24 46 46 H 1.08995 * 109.49883 * 301.41160 * 27 25 24 47 47 H 1.09004 * 109.50083 * 181.31681 * 27 25 24 48 48 H 1.09002 * 109.58612 * 353.36773 * 28 22 20 49 49 H 1.09002 * 109.58528 * 113.65489 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 1.2428 5 1 2.3500 -0.0459 2.0212 6 7 1.0472 -1.6854 1.7475 7 6 1.0906 -2.1004 3.0517 8 1 1.8679 -1.7381 3.7082 9 6 0.1325 -2.9829 3.5315 10 7 -0.8146 -3.4249 2.7313 11 14 0.1871 -3.5431 5.3126 12 1 -0.6109 -2.6111 6.1494 13 1 -0.3791 -4.9118 5.4188 14 1 1.5946 -3.5515 5.7859 15 6 3.2897 -1.5140 0.6969 16 6 2.8202 -1.8831 -0.7325 17 7 2.0353 -0.7197 -1.1840 18 6 1.8150 -0.3710 -2.4671 19 8 1.1501 0.6112 -2.7233 20 6 2.3895 -1.1941 -3.5744 21 8 2.9483 -2.2419 -3.3245 22 7 2.2873 -0.7724 -4.8504 23 6 1.7826 0.5732 -5.1559 24 6 2.8074 1.2879 -6.0498 25 6 3.0878 0.4270 -7.2836 26 6 4.0795 1.1514 -8.1960 27 6 3.6821 -0.9142 -6.8476 28 6 2.6725 -1.6519 -5.9625 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3632 -1.0275 -0.0196 32 1 0.3493 -2.0112 1.1578 33 1 -1.4838 -4.0418 3.0665 34 1 4.1668 -0.8676 0.6653 35 1 3.4871 -2.4092 1.2867 36 1 3.6789 -2.0380 -1.3856 37 1 2.1953 -2.7759 -0.7078 38 1 0.8290 0.4959 -5.6784 39 1 1.6500 1.1327 -4.2300 40 1 3.7331 1.4414 -5.4953 41 1 2.4059 2.2519 -6.3625 42 1 2.1573 0.2533 -7.8241 43 1 4.2791 0.5386 -9.0751 44 1 3.6564 2.1067 -8.5067 45 1 5.0103 1.3248 -7.6559 46 1 4.5996 -0.7400 -6.2855 47 1 3.9033 -1.5176 -7.7280 48 1 3.1273 -2.5609 -5.5688 49 1 1.7896 -1.9089 -6.5478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987142868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:59 Heat of formation + Delta-G solvation = -56.140316 kcal Electronic energy + Delta-G solvation = -28817.631906 eV Core-core repulsion = 24972.802980 eV Total energy + Delta-G solvation = -3844.828926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17661 -40.54454 -38.94802 -38.77934 -35.85651 -34.88571 -33.33332 -32.36871 -32.05159 -30.73420 -29.43806 -26.82849 -26.37214 -25.44003 -24.38288 -23.99130 -22.71722 -21.44945 -20.63178 -19.97193 -19.38503 -18.19960 -18.12206 -17.64733 -16.86137 -16.70576 -16.12511 -15.74360 -15.71774 -15.44266 -15.25101 -15.08302 -14.77294 -14.61552 -14.36270 -14.29409 -14.20356 -13.91394 -13.55634 -13.27326 -12.98248 -12.88458 -12.80880 -12.71648 -12.66882 -12.51647 -12.36389 -12.24750 -12.18400 -12.05565 -11.78510 -11.63096 -11.47361 -11.36212 -11.33614 -10.91121 -10.19873 -9.89466 -9.71660 -8.99719 -7.91314 -5.19790 0.29733 1.17995 1.50708 1.51286 1.59582 2.04480 2.30774 2.58473 3.07022 3.40461 3.66501 3.79942 3.82044 3.85027 3.88641 3.92279 4.10314 4.23159 4.26488 4.31192 4.34652 4.42113 4.51808 4.56932 4.71761 4.75311 4.76513 4.80151 4.88474 4.89446 4.92590 5.03712 5.05051 5.06637 5.08244 5.16256 5.16886 5.24610 5.33229 5.36967 5.40678 5.47839 5.51741 5.58022 5.98621 6.24217 6.29871 6.56922 6.88113 7.37109 8.10316 8.33751 9.32151 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.002703 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.757734 B =10356.769155 C =10574.397932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.130 3.870 3 H 0.102 0.898 4 C 0.163 3.837 5 H 0.084 0.916 6 N -0.726 5.726 7 C -0.233 4.233 8 H 0.083 0.917 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.289 1.289 13 H -0.302 1.302 14 H -0.267 1.267 15 C -0.149 4.149 16 C 0.116 3.884 17 N -0.576 5.576 18 C 0.514 3.486 19 O -0.529 6.529 20 C 0.505 3.495 21 O -0.541 6.541 22 N -0.577 5.577 23 C 0.066 3.934 24 C -0.123 4.123 25 C -0.093 4.093 26 C -0.143 4.143 27 C -0.120 4.120 28 C 0.102 3.898 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.376 0.624 33 H 0.248 0.752 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.496 10.366 -21.307 25.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.027 3.973 3 H 0.119 0.881 4 C 0.053 3.947 5 H 0.102 0.898 6 N -0.367 5.367 7 C -0.365 4.365 8 H 0.101 0.899 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.801 3.199 12 H -0.217 1.217 13 H -0.229 1.229 14 H -0.192 1.192 15 C -0.190 4.190 16 C -0.006 4.006 17 N -0.308 5.308 18 C 0.298 3.702 19 O -0.409 6.409 20 C 0.288 3.712 21 O -0.419 6.419 22 N -0.310 5.310 23 C -0.055 4.055 24 C -0.161 4.161 25 C -0.112 4.112 26 C -0.200 4.200 27 C -0.158 4.158 28 C -0.019 4.019 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.210 0.790 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.141 0.859 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.114 0.886 48 H 0.099 0.901 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.488 10.323 -21.204 25.810 hybrid contribution -0.727 -0.997 0.879 1.515 sum 9.761 9.326 -20.325 24.400 Atomic orbital electron populations 1.21777 0.94828 1.01077 1.01910 1.22188 0.94736 0.96576 0.83755 0.88051 1.21457 0.88949 0.91422 0.92841 0.89813 1.42729 1.31878 1.52440 1.09646 1.19643 1.08745 1.19834 0.88255 0.89886 1.25519 0.98144 1.01415 1.01711 1.69831 1.18175 1.37813 1.36359 0.85175 0.77826 0.76499 0.80441 1.21683 1.22950 1.19195 1.23459 0.99157 1.02036 0.94338 1.22400 0.95108 0.86878 0.96243 1.48700 1.49534 1.28274 1.04335 1.19948 0.81892 0.85240 0.83076 1.90456 1.40651 1.27987 1.81827 1.20040 0.80634 0.85904 0.84621 1.90716 1.42833 1.25038 1.83293 1.48085 1.61827 1.17063 1.04071 1.22998 0.97142 0.81306 1.04006 1.22057 0.98736 0.99372 0.95948 1.21172 0.99834 0.94368 0.95786 1.21784 0.98587 1.00552 0.99081 1.21938 0.97473 0.96907 0.99527 1.21933 0.99704 0.93460 0.86829 0.91379 0.92134 0.94488 0.78975 0.94280 0.88749 0.90686 0.88802 0.93530 0.90541 0.85866 0.92521 0.89018 0.90135 0.91809 0.91929 0.93142 0.92459 0.88557 0.90136 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.48 71.98 0.61 -4.48 16 2 C 0.13 4.37 3.45 45.25 0.16 4.52 16 3 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 4 C 0.16 5.99 3.46 46.18 0.16 6.15 16 5 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 6 N -0.73 -34.63 4.61 -317.33 -1.46 -36.09 16 7 C -0.23 -12.27 9.97 84.03 0.84 -11.43 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 10 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 11 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 13 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 C -0.15 -4.84 6.77 31.99 0.22 -4.63 16 16 C 0.12 3.95 5.94 86.86 0.52 4.46 16 17 N -0.58 -19.32 3.08 -788.52 -2.43 -21.75 16 18 C 0.51 16.78 7.57 87.27 0.66 17.44 16 19 O -0.53 -17.44 12.25 -3.23 -0.04 -17.48 16 20 C 0.51 15.45 7.68 87.27 0.67 16.12 16 21 O -0.54 -18.66 13.33 -3.24 -0.04 -18.70 16 22 N -0.58 -13.75 2.97 -819.63 -2.43 -16.18 16 23 C 0.07 1.34 6.01 86.51 0.52 1.86 16 24 C -0.12 -1.81 5.38 30.82 0.17 -1.65 16 25 C -0.09 -1.11 2.68 -10.77 -0.03 -1.14 16 26 C -0.14 -1.36 9.19 71.98 0.66 -0.70 16 27 C -0.12 -1.64 5.36 30.67 0.16 -1.48 16 28 C 0.10 1.90 6.44 86.36 0.56 2.45 16 29 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.14 6.93 -2.39 -0.02 2.13 16 31 H 0.04 1.59 6.21 -2.39 -0.01 1.58 16 32 H 0.38 19.86 5.58 -92.71 -0.52 19.35 16 33 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.09 3.04 6.36 -2.39 -0.02 3.02 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.12 3.05 4.31 -47.99 -0.21 2.84 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 1.75 7.01 -2.39 -0.02 1.74 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -64.75 376.80 2.47 -62.28 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.23 Total: 35.45 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 6.33 Total: 23.73 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -6.04 Total: -132.72 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.08 Total: -36.18 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -64.75 2.47 -62.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987142868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.140 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds