Wall clock time and date at job start Tue Mar 31 2020 13:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47099 * 2 1 4 4 O 1.21283 * 120.00336 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00066 * 180.02562 * 3 2 1 6 6 C 1.47020 * 125.64689 * 359.97332 * 5 3 2 7 7 C 1.54320 * 107.27169 * 179.00085 * 6 5 3 8 8 C 1.55163 * 102.94322 * 337.80513 * 7 6 5 9 9 H 1.08998 * 111.00529 * 277.39488 * 8 7 6 10 10 C 1.50699 * 111.00429 * 153.57484 * 8 7 6 11 11 O 1.21272 * 119.99987 * 244.57916 * 10 8 7 12 12 N 1.34773 * 119.99604 * 64.58530 * 10 8 7 13 13 C 1.46496 * 120.00425 * 0.02562 * 12 10 8 14 14 C 1.46506 * 119.99905 * 179.97438 * 12 10 8 15 15 C 1.53779 * 113.61276 * 119.99863 * 14 12 10 16 16 C 1.53787 * 87.07963 * 89.20243 * 15 14 12 17 17 N 1.46496 * 113.61210 * 139.97940 * 16 15 14 18 18 C 1.36942 * 119.99927 * 155.00261 * 17 16 15 19 19 H 1.08001 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99989 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00277 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47101 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47065 * 120.00010 * 22 20 18 25 25 H 1.48498 * 109.47654 * 240.00239 * 22 20 18 26 26 C 1.53779 * 113.69339 * 217.53795 * 14 12 10 27 27 C 1.47465 * 125.62907 * 180.02562 * 5 3 2 28 28 H 1.08997 * 109.47492 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47074 * 299.99679 * 1 2 3 30 30 H 1.08996 * 109.47400 * 59.99417 * 1 2 3 31 31 H 1.08995 * 109.46973 * 240.00130 * 2 1 3 32 32 H 1.09003 * 109.47382 * 119.99878 * 2 1 3 33 33 H 1.08999 * 109.88466 * 59.58133 * 6 5 3 34 34 H 1.08999 * 109.88228 * 298.41560 * 6 5 3 35 35 H 1.08998 * 110.72117 * 219.44353 * 7 6 5 36 36 H 1.08998 * 110.72366 * 96.16650 * 7 6 5 37 37 H 1.09001 * 109.46875 * 270.00037 * 13 12 10 38 38 H 1.09005 * 109.47368 * 29.99879 * 13 12 10 39 39 H 1.08997 * 109.47455 * 149.99944 * 13 12 10 40 40 H 1.09007 * 112.84595 * 348.80822 * 14 12 10 41 41 H 1.08997 * 113.61646 * 334.65874 * 15 14 12 42 42 H 1.08998 * 113.69354 * 203.76183 * 15 14 12 43 43 H 1.08994 * 113.61447 * 270.88515 * 16 15 14 44 44 H 0.97002 * 120.00490 * 335.00104 * 17 16 15 45 45 H 0.96994 * 120.00158 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.61557 * 156.32618 * 26 14 12 47 47 H 1.09004 * 113.61501 * 25.42039 * 26 14 12 48 48 H 1.09002 * 110.35405 * 85.22922 * 27 5 3 49 49 H 1.09000 * 110.40579 * 322.88864 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0006 7 6 5.7689 1.3948 -0.0269 8 6 5.3892 2.7811 -0.6114 9 1 5.3413 2.7464 -1.6998 10 6 6.3523 3.8442 -0.1496 11 8 5.9627 4.7497 0.5568 12 7 7.6464 3.7886 -0.5218 13 6 8.1168 2.6952 -1.3757 14 6 8.5826 4.8225 -0.0733 15 6 9.7542 4.2737 0.7580 16 6 10.5091 4.0938 -0.5697 17 7 11.9281 4.4496 -0.4907 18 6 12.8232 3.8928 -1.3647 19 1 12.4831 3.1916 -2.1125 20 6 14.1676 4.2303 -1.2903 21 7 14.5821 5.0852 -0.3794 22 14 15.3888 3.4702 -2.4821 23 1 14.6750 2.5471 -3.4007 24 1 16.0444 4.5439 -3.2710 25 1 16.4177 2.7155 -1.7224 26 6 9.6231 5.2165 -1.1348 27 6 3.9829 3.0025 -0.0001 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.3259 0.0177 -0.8843 34 1 4.3481 0.0408 0.9012 35 1 6.4790 0.8837 -0.6770 36 1 6.1720 1.4984 0.9804 37 1 8.4495 1.8650 -0.7526 38 1 7.3036 2.3622 -2.0207 39 1 8.9472 3.0446 -1.9891 40 1 8.0830 5.6754 0.3862 41 1 9.5291 3.3344 1.2630 42 1 10.2054 5.0127 1.4202 43 1 10.3401 3.1254 -1.0403 44 1 12.2336 5.0797 0.1806 45 1 15.5216 5.3208 -0.3272 46 1 10.0376 6.2143 -0.9908 47 1 9.2920 5.0382 -2.1580 48 1 4.0673 3.3813 1.0185 49 1 3.4061 3.6926 -0.6158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999658956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:05 Heat of formation + Delta-G solvation = -28.258889 kcal Electronic energy + Delta-G solvation = -27697.169683 eV Core-core repulsion = 23853.549787 eV Total energy + Delta-G solvation = -3843.619896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96046 -39.98946 -38.46904 -37.21190 -34.72641 -33.36983 -33.10314 -31.79012 -30.01940 -29.53975 -27.33389 -25.97986 -25.19150 -24.44795 -23.28200 -22.83184 -21.51474 -19.87691 -19.52927 -18.60475 -17.70049 -17.57823 -17.12657 -16.39820 -15.92952 -15.65397 -15.32131 -15.10372 -14.87213 -14.27047 -14.03349 -13.92253 -13.78903 -13.46751 -13.30820 -12.99440 -12.82159 -12.64887 -12.51046 -12.34225 -12.32878 -12.03651 -11.91509 -11.70198 -11.68534 -11.57743 -11.44657 -11.28483 -10.96513 -10.80736 -10.43613 -10.23677 -10.15706 -9.95941 -9.71592 -9.53940 -9.00521 -8.95073 -8.55498 -7.03830 -5.85142 -3.14496 2.31854 2.46765 2.53066 2.97369 3.37171 3.42278 3.45217 3.90264 4.00295 4.33245 4.39082 4.52341 4.60210 4.66481 4.70250 4.82612 4.84884 5.00935 5.05154 5.06869 5.11673 5.17804 5.31007 5.37868 5.39990 5.41017 5.46319 5.47993 5.56900 5.58383 5.68444 5.70739 5.80208 5.82929 5.89955 5.91616 6.12739 6.24356 6.27917 6.37795 6.49644 6.65961 7.02934 7.13558 7.38719 7.61210 7.83832 8.09510 8.32933 9.44283 10.02029 10.36007 11.37105 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.030708 B = 0.002155 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.593504 B =12988.580969 C =13567.675779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.539 6.539 5 N -0.623 5.623 6 C 0.102 3.898 7 C -0.123 4.123 8 C -0.123 4.123 9 H 0.111 0.889 10 C 0.526 3.474 11 O -0.539 6.539 12 N -0.586 5.586 13 C 0.063 3.937 14 C 0.113 3.887 15 C -0.162 4.162 16 C 0.161 3.839 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.175 4.175 27 C 0.126 3.874 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.672 -12.837 -0.665 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.315 3.685 4 O -0.415 6.415 5 N -0.359 5.359 6 C -0.022 4.022 7 C -0.161 4.161 8 C -0.145 4.145 9 H 0.129 0.871 10 C 0.313 3.687 11 O -0.416 6.416 12 N -0.318 5.318 13 C -0.079 4.079 14 C 0.009 3.991 15 C -0.202 4.202 16 C 0.049 3.951 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.217 4.217 27 C 0.003 3.997 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.102 0.898 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.246 -11.992 -0.424 26.161 hybrid contribution 1.129 -0.227 -0.508 1.259 sum -22.117 -12.219 -0.932 25.285 Atomic orbital electron populations 1.21544 0.92913 1.01647 1.03453 1.21617 0.98599 0.93386 1.04289 1.20506 0.80168 0.92035 0.75783 1.90727 1.54252 1.46793 1.49741 1.48583 1.05276 1.08081 1.73917 1.22077 0.86472 0.91346 1.02262 1.22758 0.96682 0.93572 1.03136 1.22447 0.94775 0.94924 1.02379 0.87066 1.20068 0.82302 0.86056 0.80294 1.90711 1.77253 1.35937 1.37681 1.47484 1.07989 1.26425 1.49905 1.22167 1.01318 0.89741 0.94713 1.21931 0.88820 0.90560 0.97753 1.23870 0.96204 1.01170 0.98932 1.21879 0.84678 0.95436 0.93131 1.42437 1.01058 1.52196 1.39315 1.19312 0.88436 1.20268 1.09673 0.91074 1.24781 0.97199 0.99764 0.99106 1.69667 1.15117 1.36936 1.36067 0.86127 0.81482 0.78348 0.80241 1.20529 1.21830 1.21831 1.24276 0.96958 1.02932 0.97537 1.22008 0.90562 0.84593 1.02494 0.91977 0.91934 0.91947 0.88927 0.88935 0.90778 0.90803 0.88564 0.89642 0.92023 0.91367 0.89149 0.88120 0.92048 0.89379 0.90097 0.78042 0.93437 0.89206 0.92221 0.89833 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.14 -0.84 5.61 -27.89 -0.16 -1.00 16 3 C 0.53 5.35 7.85 -10.98 -0.09 5.27 16 4 O -0.54 -7.79 16.24 5.55 0.09 -7.70 16 5 N -0.62 -5.57 3.33 -170.48 -0.57 -6.14 16 6 C 0.10 0.55 6.49 -3.07 -0.02 0.53 16 7 C -0.12 -0.76 5.56 -24.90 -0.14 -0.90 16 8 C -0.12 -1.08 2.43 -89.61 -0.22 -1.30 16 9 H 0.11 0.81 7.41 -51.93 -0.38 0.43 16 10 C 0.53 6.62 7.06 -10.99 -0.08 6.54 16 11 O -0.54 -8.89 15.24 5.56 0.08 -8.80 16 12 N -0.59 -7.18 3.08 -173.00 -0.53 -7.72 16 13 C 0.06 0.60 7.40 59.84 0.44 1.04 16 14 C 0.11 1.67 4.45 -67.12 -0.30 1.37 16 15 C -0.16 -2.57 7.50 -25.92 -0.19 -2.77 16 16 C 0.16 2.91 3.81 -67.12 -0.26 2.65 16 17 N -0.71 -16.96 5.40 -52.64 -0.28 -17.25 16 18 C -0.25 -6.49 9.97 -15.06 -0.15 -6.64 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 22 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C -0.18 -2.84 7.09 -25.92 -0.18 -3.03 16 27 C 0.13 1.34 6.00 -2.49 -0.01 1.32 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.41 6.64 -51.93 -0.34 0.07 16 36 H 0.08 0.61 8.03 -51.93 -0.42 0.20 16 37 H 0.06 0.52 7.76 -51.93 -0.40 0.12 16 38 H 0.07 0.45 6.03 -51.93 -0.31 0.14 16 39 H 0.09 0.99 4.84 -51.93 -0.25 0.74 16 40 H 0.10 1.60 7.23 -51.93 -0.38 1.23 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.47 8.12 -51.93 -0.42 1.04 16 43 H 0.08 1.38 5.51 -51.93 -0.29 1.09 16 44 H 0.39 9.89 7.92 -40.82 -0.32 9.57 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 47 H 0.06 0.92 7.37 -51.93 -0.38 0.54 16 48 H 0.08 1.04 7.45 -51.93 -0.39 0.66 16 49 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -34.09 384.83 -8.87 -42.96 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.05 Total: 6.83 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.11 Total: 2.09 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.66 Total: -57.74 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.17 Total: -16.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.09 -8.87 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999658956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.703 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds