Wall clock time and date at job start Tue Mar 31 2020 13:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47099 * 2 1 4 4 O 1.21283 * 120.00336 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00066 * 180.02562 * 3 2 1 6 6 C 1.47020 * 125.64689 * 359.97332 * 5 3 2 7 7 C 1.54320 * 107.27169 * 179.00085 * 6 5 3 8 8 C 1.55163 * 102.94322 * 337.80513 * 7 6 5 9 9 H 1.08998 * 111.00529 * 277.39488 * 8 7 6 10 10 C 1.50699 * 111.00429 * 153.57484 * 8 7 6 11 11 O 1.21272 * 119.99987 * 244.57916 * 10 8 7 12 12 N 1.34773 * 119.99604 * 64.58530 * 10 8 7 13 13 C 1.46496 * 120.00425 * 0.02562 * 12 10 8 14 14 C 1.46506 * 119.99905 * 179.97438 * 12 10 8 15 15 C 1.53779 * 113.61276 * 119.99863 * 14 12 10 16 16 C 1.53787 * 87.07963 * 89.20243 * 15 14 12 17 17 N 1.46496 * 113.61210 * 139.97940 * 16 15 14 18 18 C 1.36942 * 119.99927 * 155.00261 * 17 16 15 19 19 H 1.08001 * 119.99962 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99989 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00277 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47101 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47065 * 120.00010 * 22 20 18 25 25 H 1.48498 * 109.47654 * 240.00239 * 22 20 18 26 26 C 1.53779 * 113.69339 * 217.53795 * 14 12 10 27 27 C 1.47465 * 125.62907 * 180.02562 * 5 3 2 28 28 H 1.08997 * 109.47492 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47074 * 299.99679 * 1 2 3 30 30 H 1.08996 * 109.47400 * 59.99417 * 1 2 3 31 31 H 1.08995 * 109.46973 * 240.00130 * 2 1 3 32 32 H 1.09003 * 109.47382 * 119.99878 * 2 1 3 33 33 H 1.08999 * 109.88466 * 59.58133 * 6 5 3 34 34 H 1.08999 * 109.88228 * 298.41560 * 6 5 3 35 35 H 1.08998 * 110.72117 * 219.44353 * 7 6 5 36 36 H 1.08998 * 110.72366 * 96.16650 * 7 6 5 37 37 H 1.09001 * 109.46875 * 270.00037 * 13 12 10 38 38 H 1.09005 * 109.47368 * 29.99879 * 13 12 10 39 39 H 1.08997 * 109.47455 * 149.99944 * 13 12 10 40 40 H 1.09007 * 112.84595 * 348.80822 * 14 12 10 41 41 H 1.08997 * 113.61646 * 334.65874 * 15 14 12 42 42 H 1.08998 * 113.69354 * 203.76183 * 15 14 12 43 43 H 1.08994 * 113.61447 * 270.88515 * 16 15 14 44 44 H 0.97002 * 120.00490 * 335.00104 * 17 16 15 45 45 H 0.96994 * 120.00158 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.61557 * 156.32618 * 26 14 12 47 47 H 1.09004 * 113.61501 * 25.42039 * 26 14 12 48 48 H 1.09002 * 110.35405 * 85.22922 * 27 5 3 49 49 H 1.09000 * 110.40579 * 322.88864 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4181 0.6491 -0.0006 7 6 5.7689 1.3948 -0.0269 8 6 5.3892 2.7811 -0.6114 9 1 5.3413 2.7464 -1.6998 10 6 6.3523 3.8442 -0.1496 11 8 5.9627 4.7497 0.5568 12 7 7.6464 3.7886 -0.5218 13 6 8.1168 2.6952 -1.3757 14 6 8.5826 4.8225 -0.0733 15 6 9.7542 4.2737 0.7580 16 6 10.5091 4.0938 -0.5697 17 7 11.9281 4.4496 -0.4907 18 6 12.8232 3.8928 -1.3647 19 1 12.4831 3.1916 -2.1125 20 6 14.1676 4.2303 -1.2903 21 7 14.5821 5.0852 -0.3794 22 14 15.3888 3.4702 -2.4821 23 1 14.6750 2.5471 -3.4007 24 1 16.0444 4.5439 -3.2710 25 1 16.4177 2.7155 -1.7224 26 6 9.6231 5.2165 -1.1348 27 6 3.9829 3.0025 -0.0001 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.3259 0.0177 -0.8843 34 1 4.3481 0.0408 0.9012 35 1 6.4790 0.8837 -0.6770 36 1 6.1720 1.4984 0.9804 37 1 8.4495 1.8650 -0.7526 38 1 7.3036 2.3622 -2.0207 39 1 8.9472 3.0446 -1.9891 40 1 8.0830 5.6754 0.3862 41 1 9.5291 3.3344 1.2630 42 1 10.2054 5.0127 1.4202 43 1 10.3401 3.1254 -1.0403 44 1 12.2336 5.0797 0.1806 45 1 15.5216 5.3208 -0.3272 46 1 10.0376 6.2143 -0.9908 47 1 9.2920 5.0382 -2.1580 48 1 4.0673 3.3813 1.0185 49 1 3.4061 3.6926 -0.6158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999658956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:04 Heat of formation + Delta-G solvation = -51.633716 kcal Electronic energy + Delta-G solvation = -27698.183292 eV Core-core repulsion = 23853.549787 eV Total energy + Delta-G solvation = -3844.633505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88752 -40.90652 -39.61086 -38.08292 -36.10528 -34.80718 -33.86096 -32.63508 -31.74481 -30.17149 -28.28538 -26.92241 -26.48875 -25.99216 -24.27328 -23.55089 -22.64627 -20.99189 -20.19791 -19.74479 -18.99384 -18.58217 -18.25767 -17.44902 -16.75317 -16.72609 -16.49832 -16.21059 -15.85904 -15.54901 -15.37267 -14.86191 -14.64282 -14.55147 -14.16758 -13.97417 -13.76178 -13.63765 -13.45936 -13.32126 -13.14617 -13.11552 -12.87613 -12.81126 -12.78555 -12.57811 -12.54851 -12.25272 -12.06155 -12.05604 -11.85113 -11.83079 -11.67727 -11.09478 -10.94708 -10.86176 -10.77980 -9.71911 -9.61989 -8.97469 -7.92136 -5.20843 1.50458 1.50818 1.51559 1.59005 1.60821 1.73120 2.11658 2.58943 3.22161 3.36608 3.39908 3.64441 3.76388 3.77522 3.84338 3.95410 4.03398 4.19724 4.23256 4.25590 4.28911 4.30680 4.32697 4.36753 4.57722 4.70205 4.72108 4.74821 4.79416 4.85774 4.89408 4.89883 4.94169 4.98732 5.04483 5.05619 5.09739 5.12086 5.16056 5.23874 5.33100 5.37316 5.55026 5.74431 6.29289 6.39516 6.48967 7.09278 7.12768 7.35512 8.12183 8.34270 9.31549 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.030708 B = 0.002155 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.593504 B =12988.580969 C =13567.675779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.515 3.485 4 O -0.596 6.596 5 N -0.622 5.622 6 C 0.098 3.902 7 C -0.117 4.117 8 C -0.110 4.110 9 H 0.137 0.863 10 C 0.523 3.477 11 O -0.587 6.587 12 N -0.584 5.584 13 C 0.055 3.945 14 C 0.128 3.872 15 C -0.153 4.153 16 C 0.152 3.848 17 N -0.729 5.729 18 C -0.237 4.237 19 H 0.085 0.915 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.259 1.259 24 H -0.300 1.300 25 H -0.297 1.297 26 C -0.166 4.166 27 C 0.124 3.876 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.314 -16.815 -2.411 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.306 3.694 4 O -0.477 6.477 5 N -0.355 5.355 6 C -0.023 4.023 7 C -0.155 4.155 8 C -0.132 4.132 9 H 0.155 0.845 10 C 0.312 3.688 11 O -0.467 6.467 12 N -0.315 5.315 13 C -0.087 4.087 14 C 0.023 3.977 15 C -0.193 4.193 16 C 0.043 3.957 17 N -0.366 5.366 18 C -0.369 4.369 19 H 0.103 0.897 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.801 3.199 23 H -0.183 1.183 24 H -0.227 1.227 25 H -0.225 1.225 26 C -0.207 4.207 27 C 0.001 3.999 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.915 -16.050 -2.205 28.885 hybrid contribution 1.223 1.033 0.069 1.602 sum -22.691 -15.017 -2.137 27.294 Atomic orbital electron populations 1.21560 0.93720 1.02738 1.01669 1.21683 0.97814 0.90556 1.06787 1.21412 0.80057 0.93317 0.74621 1.90700 1.55775 1.48793 1.52428 1.48699 1.05804 1.08097 1.72929 1.22389 0.84482 0.90599 1.04834 1.22845 0.97883 0.91715 1.03066 1.22382 0.92118 0.95103 1.03569 0.84491 1.20745 0.82591 0.86146 0.79345 1.90700 1.78057 1.38070 1.39916 1.47525 1.07484 1.26434 1.50016 1.22441 1.02362 0.88970 0.94894 1.21586 0.88608 0.90995 0.96537 1.23729 0.96094 1.01467 0.98010 1.22240 0.82020 0.96668 0.94779 1.42681 1.03138 1.52039 1.38718 1.19780 0.88821 1.19038 1.09267 0.89671 1.25598 0.99292 1.01107 1.01247 1.69832 1.14856 1.39244 1.38417 0.85094 0.79056 0.77422 0.78317 1.18276 1.22723 1.22465 1.24047 0.96801 1.01209 0.98646 1.21803 0.91905 0.85618 1.00612 0.89285 0.93959 0.93638 0.85898 0.86481 0.87401 0.88984 0.85321 0.90729 0.90227 0.87678 0.90439 0.89683 0.90814 0.90700 0.88166 0.79737 0.94241 0.91090 0.90948 0.92683 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.96 16 2 C -0.13 -1.17 5.61 29.85 0.17 -1.00 16 3 C 0.51 9.91 7.85 87.66 0.69 10.60 16 4 O -0.60 -17.91 16.24 -3.04 -0.05 -17.96 16 5 N -0.62 -9.89 3.33 -811.65 -2.70 -12.59 16 6 C 0.10 0.62 6.49 86.73 0.56 1.18 16 7 C -0.12 -0.94 5.56 31.78 0.18 -0.76 16 8 C -0.11 -1.65 2.43 -10.14 -0.02 -1.68 16 9 H 0.14 1.41 7.41 -2.39 -0.02 1.39 16 10 C 0.52 12.50 7.06 87.66 0.62 13.12 16 11 O -0.59 -19.84 15.24 -3.01 -0.05 -19.88 16 12 N -0.58 -13.02 3.08 -819.65 -2.53 -15.55 16 13 C 0.05 0.79 7.40 127.77 0.95 1.74 16 14 C 0.13 3.68 4.45 45.52 0.20 3.88 16 15 C -0.15 -4.76 7.50 31.12 0.23 -4.53 16 16 C 0.15 5.31 3.81 45.52 0.17 5.49 16 17 N -0.73 -34.61 5.40 -320.44 -1.73 -36.35 16 18 C -0.24 -12.32 9.97 84.03 0.84 -11.48 16 19 H 0.09 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -58.44 13.06 21.65 0.28 -58.16 16 22 Si 0.97 44.22 29.55 68.60 2.03 46.25 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 26 C -0.17 -5.25 7.09 31.12 0.22 -5.03 16 27 C 0.12 2.63 6.00 86.86 0.52 3.15 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.04 0.65 8.10 -2.38 -0.02 0.63 16 30 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.13 0.26 6.64 -2.39 -0.02 0.24 16 36 H 0.07 0.81 8.03 -2.39 -0.02 0.79 16 37 H 0.08 0.93 7.76 -2.39 -0.02 0.91 16 38 H 0.10 0.78 6.03 -2.38 -0.01 0.77 16 39 H 0.08 1.39 4.84 -2.39 -0.01 1.38 16 40 H 0.09 2.76 7.23 -2.38 -0.02 2.75 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 43 H 0.10 3.12 5.51 -2.39 -0.01 3.11 16 44 H 0.37 19.49 7.92 -92.71 -0.73 18.75 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.07 2.10 7.37 -2.39 -0.02 2.08 16 48 H 0.05 1.46 7.45 -2.39 -0.02 1.45 16 49 H 0.06 1.53 8.04 -2.39 -0.02 1.52 16 Total: -1.00 -79.41 384.83 1.93 -77.48 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.22 Total: 27.02 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.45 Total: 9.73 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -6.68 Total: -122.64 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.10 Total: -37.84 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -79.41 1.93 -77.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999658956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.851 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds