Wall clock time and date at job start Tue Mar 31 2020 14:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.49513 * 2 1 4 4 C 1.53046 * 109.52497 * 120.07581 * 2 1 3 5 5 C 1.53040 * 109.53695 * 181.33587 * 4 2 1 6 6 C 1.53629 * 109.24159 * 298.50989 * 5 4 2 7 7 N 1.46925 * 108.53986 * 54.86022 * 6 5 4 8 8 C 1.34779 * 120.62962 * 126.37217 * 7 6 5 9 9 O 1.21348 * 119.99990 * 188.10827 * 8 7 6 10 10 C 1.49450 * 120.00437 * 8.10319 * 8 7 6 11 11 O 1.21355 * 119.99388 * 6.15548 * 10 8 7 12 12 N 1.34768 * 120.00455 * 186.15035 * 10 8 7 13 13 C 1.46499 * 119.99988 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.50107 * 35.06923 * 13 12 10 15 15 C 1.53048 * 109.49410 * 155.16198 * 13 12 10 16 16 C 1.53048 * 109.53471 * 181.31888 * 15 13 12 17 17 C 1.53625 * 109.23713 * 298.50731 * 16 15 13 18 18 N 1.46929 * 108.54386 * 54.86133 * 17 16 15 19 19 C 1.36941 * 120.62804 * 126.36343 * 18 17 16 20 20 H 1.07996 * 119.99950 * 326.07925 * 19 18 17 21 21 C 1.38812 * 119.99648 * 146.08257 * 19 18 17 22 22 N 1.31625 * 119.99742 * 334.85404 * 21 19 18 23 23 Si 1.86797 * 120.00017 * 154.85390 * 21 19 18 24 24 H 1.48503 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47066 * 240.00006 * 23 21 19 26 26 H 1.48496 * 109.47150 * 120.00087 * 23 21 19 27 27 C 1.46925 * 118.73823 * 306.09191 * 18 17 16 28 28 C 1.46923 * 118.73903 * 306.08905 * 7 6 5 29 29 H 1.09007 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47364 * 300.06290 * 1 2 3 31 31 H 1.08996 * 109.47573 * 60.07233 * 1 2 3 32 32 H 1.08994 * 109.45827 * 301.35345 * 4 2 1 33 33 H 1.09001 * 109.45938 * 61.33005 * 4 2 1 34 34 H 1.08998 * 109.50365 * 58.58529 * 5 4 2 35 35 H 1.08998 * 109.49707 * 178.65402 * 5 4 2 36 36 H 1.08994 * 109.74028 * 295.12364 * 6 5 4 37 37 H 1.08999 * 109.66281 * 174.54948 * 6 5 4 38 38 H 0.97001 * 119.99880 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.46228 * 301.33109 * 15 13 12 40 40 H 1.09002 * 109.46301 * 61.31216 * 15 13 12 41 41 H 1.08990 * 109.49720 * 58.58414 * 16 15 13 42 42 H 1.09001 * 109.49533 * 178.68732 * 16 15 13 43 43 H 1.08999 * 109.74217 * 295.11748 * 17 16 15 44 44 H 1.09005 * 109.65947 * 174.55082 * 17 16 15 45 45 H 0.96999 * 120.00622 * 353.85204 * 22 21 19 46 46 H 1.08996 * 109.58570 * 173.64922 * 27 18 17 47 47 H 1.09002 * 109.58293 * 294.07000 * 27 18 17 48 48 H 1.09004 * 109.58826 * 173.65105 * 28 7 6 49 49 H 1.08997 * 109.58965 * 294.07912 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0414 -0.7229 1.2482 5 6 3.5715 -0.6940 1.2655 6 6 4.1057 -1.4305 0.0276 7 7 3.5047 -0.8281 -1.1701 8 6 4.2807 -0.3850 -2.1790 9 8 3.7875 0.2414 -3.0938 10 6 5.7487 -0.6649 -2.1711 11 8 6.2246 -1.3844 -1.3175 12 7 6.5441 -0.1186 -3.1120 13 6 7.9830 -0.3935 -3.1045 14 1 8.1563 -1.4160 -2.7692 15 6 8.5442 -0.2165 -4.5173 16 6 10.0410 -0.5354 -4.5171 17 6 10.7671 0.4441 -3.5826 18 7 10.1367 0.3797 -2.2571 19 6 10.8886 0.1412 -1.1377 20 1 11.7509 -0.5065 -1.1944 21 6 10.5424 0.7321 0.0698 22 7 9.8548 1.8543 0.0800 23 14 11.0524 -0.0656 1.6800 24 1 11.8110 -1.3106 1.3973 25 1 9.8418 -0.3939 2.4751 26 1 11.9093 0.8732 2.4479 27 6 8.6850 0.5820 -2.1546 28 6 2.0413 -0.7235 -1.2497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3634 0.5127 -0.8906 32 1 1.6588 -0.2245 2.1388 33 1 1.6981 -1.7573 1.2351 34 1 3.9161 0.3400 1.2535 35 1 3.9345 -1.1880 2.1667 36 1 3.8350 -2.4850 0.0813 37 1 5.1902 -1.3314 -0.0185 38 1 6.1636 0.4561 -3.7945 39 1 8.0291 -0.8924 -5.2000 40 1 8.3924 0.8129 -4.8421 41 1 10.1954 -1.5566 -4.1688 42 1 10.4352 -0.4318 -5.5281 43 1 10.6867 1.4572 -3.9768 44 1 11.8174 0.1636 -3.5018 45 1 9.6667 2.3156 -0.7523 46 1 8.3610 0.3926 -1.1313 47 1 8.4382 1.6061 -2.4346 48 1 1.7633 -0.1577 -2.1390 49 1 1.6057 -1.7215 -1.2980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008775420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:14 Heat of formation + Delta-G solvation = -52.358290 kcal Electronic energy + Delta-G solvation = -28949.923879 eV Core-core repulsion = 25105.258954 eV Total energy + Delta-G solvation = -3844.664925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87789 -39.08336 -37.73604 -37.44853 -34.67709 -33.67868 -32.82485 -31.93908 -29.95908 -29.27116 -27.33859 -26.11971 -25.09833 -23.74851 -22.41498 -22.17786 -21.57537 -20.39664 -19.87281 -19.18152 -17.42189 -17.37279 -16.89796 -15.88541 -15.62711 -15.36810 -14.94983 -14.62691 -14.37136 -14.27408 -14.03115 -13.78569 -13.66293 -13.48041 -13.37695 -13.11428 -12.77360 -12.67111 -12.37447 -12.29314 -12.06508 -11.90644 -11.46769 -11.26983 -11.20356 -11.03044 -10.96389 -10.69728 -10.65025 -10.55922 -10.38296 -10.23340 -10.07307 -9.91243 -9.43005 -9.00120 -8.84284 -8.75131 -8.33678 -6.87066 -6.06247 -3.30700 1.56547 2.42420 3.35819 3.52191 3.55969 3.59811 3.69511 4.40728 4.55671 4.58830 4.62401 4.70735 4.94026 5.15266 5.17854 5.23971 5.27860 5.31477 5.34466 5.41965 5.49008 5.51809 5.55401 5.55982 5.61412 5.80878 5.87155 5.87771 5.89541 5.97931 5.99702 6.07305 6.11131 6.24688 6.28090 6.30193 6.35378 6.49637 6.65624 6.71202 6.75990 6.93074 7.09512 7.15883 7.45559 7.86652 8.07576 8.22696 8.58166 9.09968 9.82337 10.28188 11.19104 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.003904 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.277666 B = 7169.517399 C = 8779.109630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.065 3.935 7 N -0.582 5.582 8 C 0.511 3.489 9 O -0.529 6.529 10 C 0.504 3.496 11 O -0.505 6.505 12 N -0.687 5.687 13 C 0.119 3.881 14 H 0.090 0.910 15 C -0.117 4.117 16 C -0.130 4.130 17 C 0.142 3.858 18 N -0.592 5.592 19 C -0.356 4.356 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.908 5.908 23 Si 1.067 2.933 24 H -0.291 1.291 25 H -0.288 1.288 26 H -0.294 1.294 27 C 0.151 3.849 28 C 0.113 3.887 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.147 0.853 38 H 0.406 0.594 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.058 0.942 45 H 0.268 0.732 46 H 0.079 0.921 47 H 0.019 0.981 48 H 0.092 0.908 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 -5.532 -3.450 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.175 4.175 6 C -0.056 4.056 7 N -0.316 5.316 8 C 0.294 3.706 9 O -0.406 6.406 10 C 0.285 3.715 11 O -0.382 6.382 12 N -0.338 5.338 13 C 0.015 3.985 14 H 0.108 0.892 15 C -0.155 4.155 16 C -0.170 4.170 17 C 0.016 3.984 18 N -0.316 5.316 19 C -0.485 4.485 20 H 0.072 0.928 21 C -0.219 4.219 22 N -0.546 5.546 23 Si 0.896 3.104 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.221 1.221 27 C 0.023 3.977 28 C -0.010 4.010 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.241 0.759 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.036 0.964 48 H 0.111 0.889 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.756 -5.618 -1.665 16.810 hybrid contribution -0.201 0.175 -1.955 1.974 sum -15.957 -5.443 -3.621 17.244 Atomic orbital electron populations 1.21758 0.94346 1.01980 1.02088 1.21509 0.95880 1.00373 0.94916 0.90584 1.21625 0.95838 1.00560 0.97306 1.22031 0.95350 1.01841 0.98281 1.23065 1.04107 0.96181 0.82205 1.47948 1.06498 1.58955 1.18149 1.20283 0.87958 0.79696 0.82680 1.90710 1.75149 1.38729 1.36024 1.19997 0.87097 0.81611 0.82785 1.90509 1.75397 1.37271 1.35030 1.45980 1.08878 1.48854 1.30112 1.22055 0.76524 1.02618 0.97347 0.89165 1.21687 0.97095 1.01413 0.95303 1.22067 0.94151 1.01258 0.99507 1.21098 0.96039 0.95048 0.86212 1.44013 1.00956 1.84134 1.02503 1.19916 1.13125 1.26650 0.88785 0.92806 1.25942 0.99236 0.95028 1.01659 1.70720 1.40572 1.12750 1.30587 0.83528 0.76121 0.75132 0.75588 1.21660 1.21478 1.22092 1.21221 0.84156 0.93801 0.98502 1.21780 0.78888 1.00934 0.99356 0.92507 0.92233 0.92412 0.91687 0.91822 0.91359 0.90335 0.91467 0.83608 0.75888 0.92548 0.91957 0.91932 0.92357 0.96418 0.92315 0.92113 0.90250 0.96353 0.88922 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.15 0.34 -0.71 16 2 C -0.11 -1.02 2.87 -90.50 -0.26 -1.28 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.06 5.17 -26.69 -0.14 -1.20 16 5 C -0.14 -1.55 6.10 -26.38 -0.16 -1.71 16 6 C 0.07 0.86 6.03 -3.48 -0.02 0.84 16 7 N -0.58 -7.94 2.97 -173.01 -0.51 -8.46 16 8 C 0.51 8.16 7.74 -11.58 -0.09 8.07 16 9 O -0.53 -9.00 15.92 5.50 0.09 -8.91 16 10 C 0.50 8.83 7.72 -11.59 -0.09 8.74 16 11 O -0.51 -9.89 12.82 5.49 0.07 -9.82 16 12 N -0.69 -11.49 5.07 -54.12 -0.27 -11.77 16 13 C 0.12 2.24 2.60 -67.81 -0.18 2.06 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 15 C -0.12 -1.84 5.35 -26.68 -0.14 -1.99 16 16 C -0.13 -2.16 6.10 -26.38 -0.16 -2.32 16 17 C 0.14 2.92 6.54 -3.48 -0.02 2.89 16 18 N -0.59 -14.70 2.75 -172.05 -0.47 -15.18 16 19 C -0.36 -9.93 9.41 -15.06 -0.14 -10.07 16 20 H 0.05 1.52 7.95 -52.49 -0.42 1.10 16 21 C -0.02 -0.43 4.64 -17.43 -0.08 -0.51 16 22 N -0.91 -27.29 12.66 55.49 0.70 -26.59 16 23 Si 1.07 25.64 29.99 -169.99 -5.10 20.54 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.15 3.51 4.38 -3.71 -0.02 3.49 16 28 C 0.11 1.23 5.72 -3.71 -0.02 1.21 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.15 2.37 4.26 -55.07 -0.23 2.14 16 38 H 0.41 6.00 8.09 -40.82 -0.33 5.67 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 45 H 0.27 8.16 7.05 -40.82 -0.29 7.87 16 46 H 0.08 2.16 6.75 -51.93 -0.35 1.81 16 47 H 0.02 0.44 7.91 -51.93 -0.41 0.03 16 48 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -31.51 379.72 -9.29 -40.80 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.34 Total: 6.15 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.18 Total: 7.52 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.56 Total: -61.99 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.16 Total: -18.74 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.10 Total: 20.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.51 -9.29 -40.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008775420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.557 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds