Wall clock time and date at job start Tue Mar 31 2020 14:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.49513 * 2 1 4 4 C 1.53046 * 109.52497 * 120.07581 * 2 1 3 5 5 C 1.53040 * 109.53695 * 181.33587 * 4 2 1 6 6 C 1.53629 * 109.24159 * 298.50989 * 5 4 2 7 7 N 1.46925 * 108.53986 * 54.86022 * 6 5 4 8 8 C 1.34779 * 120.62962 * 126.37217 * 7 6 5 9 9 O 1.21348 * 119.99990 * 188.10827 * 8 7 6 10 10 C 1.49450 * 120.00437 * 8.10319 * 8 7 6 11 11 O 1.21355 * 119.99388 * 6.15548 * 10 8 7 12 12 N 1.34768 * 120.00455 * 186.15035 * 10 8 7 13 13 C 1.46499 * 119.99988 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.50107 * 35.06923 * 13 12 10 15 15 C 1.53048 * 109.49410 * 155.16198 * 13 12 10 16 16 C 1.53048 * 109.53471 * 181.31888 * 15 13 12 17 17 C 1.53625 * 109.23713 * 298.50731 * 16 15 13 18 18 N 1.46929 * 108.54386 * 54.86133 * 17 16 15 19 19 C 1.36941 * 120.62804 * 126.36343 * 18 17 16 20 20 H 1.07996 * 119.99950 * 326.07925 * 19 18 17 21 21 C 1.38812 * 119.99648 * 146.08257 * 19 18 17 22 22 N 1.31625 * 119.99742 * 334.85404 * 21 19 18 23 23 Si 1.86797 * 120.00017 * 154.85390 * 21 19 18 24 24 H 1.48503 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47066 * 240.00006 * 23 21 19 26 26 H 1.48496 * 109.47150 * 120.00087 * 23 21 19 27 27 C 1.46925 * 118.73823 * 306.09191 * 18 17 16 28 28 C 1.46923 * 118.73903 * 306.08905 * 7 6 5 29 29 H 1.09007 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47364 * 300.06290 * 1 2 3 31 31 H 1.08996 * 109.47573 * 60.07233 * 1 2 3 32 32 H 1.08994 * 109.45827 * 301.35345 * 4 2 1 33 33 H 1.09001 * 109.45938 * 61.33005 * 4 2 1 34 34 H 1.08998 * 109.50365 * 58.58529 * 5 4 2 35 35 H 1.08998 * 109.49707 * 178.65402 * 5 4 2 36 36 H 1.08994 * 109.74028 * 295.12364 * 6 5 4 37 37 H 1.08999 * 109.66281 * 174.54948 * 6 5 4 38 38 H 0.97001 * 119.99880 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.46228 * 301.33109 * 15 13 12 40 40 H 1.09002 * 109.46301 * 61.31216 * 15 13 12 41 41 H 1.08990 * 109.49720 * 58.58414 * 16 15 13 42 42 H 1.09001 * 109.49533 * 178.68732 * 16 15 13 43 43 H 1.08999 * 109.74217 * 295.11748 * 17 16 15 44 44 H 1.09005 * 109.65947 * 174.55082 * 17 16 15 45 45 H 0.96999 * 120.00622 * 353.85204 * 22 21 19 46 46 H 1.08996 * 109.58570 * 173.64922 * 27 18 17 47 47 H 1.09002 * 109.58293 * 294.07000 * 27 18 17 48 48 H 1.09004 * 109.58826 * 173.65105 * 28 7 6 49 49 H 1.08997 * 109.58965 * 294.07912 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0414 -0.7229 1.2482 5 6 3.5715 -0.6940 1.2655 6 6 4.1057 -1.4305 0.0276 7 7 3.5047 -0.8281 -1.1701 8 6 4.2807 -0.3850 -2.1790 9 8 3.7875 0.2414 -3.0938 10 6 5.7487 -0.6649 -2.1711 11 8 6.2246 -1.3844 -1.3175 12 7 6.5441 -0.1186 -3.1120 13 6 7.9830 -0.3935 -3.1045 14 1 8.1563 -1.4160 -2.7692 15 6 8.5442 -0.2165 -4.5173 16 6 10.0410 -0.5354 -4.5171 17 6 10.7671 0.4441 -3.5826 18 7 10.1367 0.3797 -2.2571 19 6 10.8886 0.1412 -1.1377 20 1 11.7509 -0.5065 -1.1944 21 6 10.5424 0.7321 0.0698 22 7 9.8548 1.8543 0.0800 23 14 11.0524 -0.0656 1.6800 24 1 11.8110 -1.3106 1.3973 25 1 9.8418 -0.3939 2.4751 26 1 11.9093 0.8732 2.4479 27 6 8.6850 0.5820 -2.1546 28 6 2.0413 -0.7235 -1.2497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3634 0.5127 -0.8906 32 1 1.6588 -0.2245 2.1388 33 1 1.6981 -1.7573 1.2351 34 1 3.9161 0.3400 1.2535 35 1 3.9345 -1.1880 2.1667 36 1 3.8350 -2.4850 0.0813 37 1 5.1902 -1.3314 -0.0185 38 1 6.1636 0.4561 -3.7945 39 1 8.0291 -0.8924 -5.2000 40 1 8.3924 0.8129 -4.8421 41 1 10.1954 -1.5566 -4.1688 42 1 10.4352 -0.4318 -5.5281 43 1 10.6867 1.4572 -3.9768 44 1 11.8174 0.1636 -3.5018 45 1 9.6667 2.3156 -0.7523 46 1 8.3610 0.3926 -1.1313 47 1 8.4382 1.6061 -2.4346 48 1 1.7633 -0.1577 -2.1390 49 1 1.6057 -1.7215 -1.2980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008775420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:13 Heat of formation + Delta-G solvation = -72.766151 kcal Electronic energy + Delta-G solvation = -28950.808830 eV Core-core repulsion = 25105.258954 eV Total energy + Delta-G solvation = -3845.549876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15971 -40.40603 -39.07852 -38.81488 -36.24113 -34.90601 -34.42150 -32.86665 -31.82223 -30.88684 -28.25239 -27.18671 -27.01912 -25.04101 -23.94524 -23.33728 -23.01369 -21.66204 -21.14766 -20.51167 -19.37096 -18.67176 -18.20139 -17.19094 -17.00902 -16.60610 -16.23407 -16.09667 -15.87057 -15.60368 -15.32287 -15.26157 -15.08100 -14.95356 -14.47020 -14.24654 -14.17285 -14.07847 -13.66186 -13.55482 -13.22043 -13.07354 -12.82174 -12.63359 -12.54787 -12.44244 -12.08775 -11.93347 -11.90530 -11.88100 -11.83055 -11.74836 -11.60932 -11.36493 -11.32767 -10.50071 -10.40814 -10.25831 -9.85205 -8.94492 -8.25368 -5.50610 0.22669 1.18188 1.54604 1.63206 1.78940 2.01504 2.33349 2.62496 3.11856 3.23532 3.58757 3.70366 3.75288 3.81146 3.88576 3.98697 4.01543 4.09051 4.26002 4.30462 4.34426 4.39037 4.53961 4.62092 4.67009 4.71599 4.72792 4.80375 4.84018 4.87538 4.97786 4.99706 5.03627 5.07198 5.08632 5.11965 5.13833 5.20407 5.24923 5.32252 5.38351 5.45236 5.48975 5.85705 5.90266 6.13488 6.35435 6.61481 6.86824 7.03859 7.72115 8.18791 8.94151 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.003904 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.277666 B = 7169.517399 C = 8779.109630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.056 0.944 4 C -0.110 4.110 5 C -0.135 4.135 6 C 0.065 3.935 7 N -0.576 5.576 8 C 0.510 3.490 9 O -0.543 6.543 10 C 0.499 3.501 11 O -0.530 6.530 12 N -0.680 5.680 13 C 0.135 3.865 14 H 0.070 0.930 15 C -0.109 4.109 16 C -0.119 4.119 17 C 0.135 3.865 18 N -0.613 5.613 19 C -0.360 4.360 20 H 0.048 0.952 21 C -0.067 4.067 22 N -0.935 5.935 23 Si 1.111 2.889 24 H -0.271 1.271 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.164 3.836 28 C 0.109 3.891 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.417 0.583 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.005 0.995 48 H 0.085 0.915 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.361 -6.953 -4.263 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.173 4.173 6 C -0.056 4.056 7 N -0.308 5.308 8 C 0.293 3.707 9 O -0.422 6.422 10 C 0.280 3.720 11 O -0.408 6.408 12 N -0.332 5.332 13 C 0.029 3.971 14 H 0.088 0.912 15 C -0.147 4.147 16 C -0.158 4.158 17 C 0.010 3.990 18 N -0.338 5.338 19 C -0.489 4.489 20 H 0.066 0.934 21 C -0.265 4.265 22 N -0.575 5.575 23 Si 0.936 3.064 24 H -0.196 1.196 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.036 3.964 28 C -0.012 4.012 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.255 0.745 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.039 0.961 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.023 0.977 48 H 0.103 0.897 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.375 -7.047 -2.510 18.917 hybrid contribution 0.310 0.622 -1.709 1.845 sum -17.065 -6.425 -4.219 18.716 Atomic orbital electron populations 1.21717 0.92157 1.03075 1.02611 1.21490 0.97577 0.99037 0.94286 0.92552 1.21609 0.93696 1.01755 0.97631 1.22015 0.97324 1.00272 0.97708 1.22982 1.02333 0.97547 0.82770 1.48090 1.07694 1.57624 1.17380 1.19963 0.87193 0.80231 0.83350 1.90699 1.75027 1.39717 1.36736 1.20449 0.88116 0.81176 0.82244 1.90534 1.76241 1.38308 1.35760 1.45846 1.08032 1.49011 1.30323 1.21638 0.77370 0.99699 0.98379 0.91185 1.21682 0.96631 1.03110 0.93301 1.21951 0.94172 0.99332 1.00333 1.21302 0.96217 0.96477 0.85008 1.44254 1.01538 1.84497 1.03463 1.20148 1.13036 1.25600 0.90160 0.93392 1.27227 0.99320 0.94964 1.04939 1.70846 1.42964 1.14181 1.29537 0.82937 0.76004 0.75194 0.72286 1.19603 1.21672 1.21250 1.20947 0.84153 0.94220 0.97039 1.22052 0.76855 1.02428 0.99897 0.91089 0.91428 0.92261 0.90383 0.90056 0.93581 0.89248 0.89522 0.86842 0.74519 0.89130 0.90756 0.92572 0.88318 0.96139 0.92815 0.93841 0.95058 0.97715 0.89673 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.20 71.98 0.66 -0.97 16 2 C -0.10 -1.80 2.87 -10.72 -0.03 -1.84 16 3 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 4 C -0.11 -1.77 5.17 30.62 0.16 -1.61 16 5 C -0.14 -2.99 6.10 30.82 0.19 -2.80 16 6 C 0.06 1.69 6.03 86.51 0.52 2.22 16 7 N -0.58 -15.49 2.97 -819.65 -2.43 -17.92 16 8 C 0.51 16.41 7.74 87.27 0.68 17.09 16 9 O -0.54 -18.36 15.92 -3.24 -0.05 -18.41 16 10 C 0.50 17.93 7.72 87.27 0.67 18.61 16 11 O -0.53 -21.71 12.82 -3.26 -0.04 -21.75 16 12 N -0.68 -22.93 5.07 -443.51 -2.25 -25.18 16 13 C 0.13 5.08 2.60 45.07 0.12 5.20 16 14 H 0.07 2.96 7.58 -2.39 -0.02 2.94 16 15 C -0.11 -3.19 5.35 30.63 0.16 -3.02 16 16 C -0.12 -3.64 6.10 30.82 0.19 -3.45 16 17 C 0.13 5.47 6.54 86.51 0.57 6.03 16 18 N -0.61 -31.19 2.75 -698.26 -1.92 -33.11 16 19 C -0.36 -20.64 9.41 84.03 0.79 -19.85 16 20 H 0.05 2.76 7.95 -2.91 -0.02 2.74 16 21 C -0.07 -3.92 4.64 84.86 0.39 -3.52 16 22 N -0.93 -58.58 12.66 21.65 0.27 -58.31 16 23 Si 1.11 52.87 29.99 68.60 2.06 54.92 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 C 0.16 7.94 4.38 86.36 0.38 8.32 16 28 C 0.11 2.20 5.72 86.36 0.49 2.70 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.11 3.86 4.26 -52.08 -0.22 3.64 16 38 H 0.42 12.11 8.09 -92.71 -0.75 11.36 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 2.19 7.93 -2.38 -0.02 2.17 16 45 H 0.25 16.15 7.05 -92.71 -0.65 15.49 16 46 H 0.03 1.79 6.75 -2.39 -0.02 1.78 16 47 H 0.00 0.25 7.91 -2.39 -0.02 0.23 16 48 H 0.08 1.89 7.00 -2.38 -0.02 1.87 16 49 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -72.11 379.72 1.67 -70.44 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.09 Total: 26.22 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 5.94 Total: 23.09 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -6.33 Total: -134.52 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.09 Total: -40.16 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 2.06 Total: 54.92 kcal Total: -72.11 1.67 -70.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008775420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.327 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds