Wall clock time and date at job start Tue Mar 31 2020 14:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47418 * 2 1 4 4 N 1.46503 * 109.47008 * 120.00196 * 2 1 3 5 5 C 1.46764 * 124.34896 * 119.95053 * 4 2 1 6 6 C 1.54477 * 105.47394 * 197.03582 * 5 4 2 7 7 H 1.08992 * 111.00740 * 216.45046 * 6 5 4 8 8 C 1.50703 * 110.96907 * 92.70056 * 6 5 4 9 9 O 1.21283 * 120.00158 * 342.31109 * 8 6 5 10 10 N 1.34784 * 119.99810 * 162.30987 * 8 6 5 11 11 C 1.47423 * 125.64613 * 355.16446 * 10 8 6 12 12 C 1.54914 * 104.82703 * 155.91456 * 11 10 8 13 13 C 1.55159 * 101.58585 * 37.01008 * 12 11 10 14 14 H 1.08996 * 110.71737 * 205.95718 * 13 12 11 15 15 N 1.46498 * 110.72082 * 82.85890 * 13 12 11 16 16 C 1.36932 * 119.99939 * 88.84655 * 15 13 12 17 17 H 1.08004 * 119.99942 * 359.97438 * 16 15 13 18 18 C 1.38808 * 119.99847 * 180.02562 * 16 15 13 19 19 N 1.31616 * 120.00385 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99758 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46924 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47173 * 299.99542 * 20 18 16 23 23 H 1.48500 * 109.47257 * 59.99815 * 20 18 16 24 24 C 1.47487 * 125.58999 * 175.18900 * 10 8 6 25 25 H 1.09000 * 109.96293 * 300.32911 * 24 10 8 26 26 C 1.53006 * 110.03165 * 61.64409 * 24 10 8 27 27 C 1.54627 * 101.76464 * 334.58540 * 6 5 4 28 28 C 1.34415 * 124.34786 * 299.97235 * 4 2 1 29 29 O 1.21276 * 124.94391 * 359.53861 * 28 4 2 30 30 H 1.08996 * 109.47244 * 59.99573 * 1 2 3 31 31 H 1.08997 * 109.47421 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46999 * 299.99940 * 1 2 3 33 33 H 1.09002 * 109.46999 * 240.00060 * 2 1 3 34 34 H 1.08997 * 109.47195 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47362 * 300.00115 * 3 2 1 36 36 H 1.09002 * 109.46987 * 60.00053 * 3 2 1 37 37 H 1.08999 * 110.24901 * 78.03504 * 5 4 2 38 38 H 1.09008 * 110.24488 * 316.03447 * 5 4 2 39 39 H 1.08996 * 110.36744 * 37.07720 * 11 10 8 40 40 H 1.08999 * 110.36691 * 274.74581 * 11 10 8 41 41 H 1.09004 * 111.00190 * 278.93244 * 12 11 10 42 42 H 1.08999 * 111.00129 * 155.08142 * 12 11 10 43 43 H 0.96999 * 119.99927 * 268.84955 * 15 13 12 44 44 H 0.97005 * 120.00546 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.46752 * 177.60748 * 26 24 10 46 46 H 1.08995 * 109.46885 * 297.60603 * 26 24 10 47 47 H 1.09001 * 109.46969 * 57.60966 * 26 24 10 48 48 H 1.09003 * 110.48813 * 143.47749 * 27 6 5 49 49 H 1.09003 * 110.48425 * 265.98572 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8647 -1.8894 1.1727 6 6 2.7598 -2.4959 2.5896 7 1 3.7122 -2.9229 2.9034 8 6 1.6622 -3.5265 2.6552 9 8 0.8055 -3.5555 1.7972 10 7 1.6326 -4.4160 3.6673 11 6 2.6591 -4.5589 4.7158 12 6 1.9174 -5.2077 5.9111 13 6 0.9512 -6.1818 5.1866 14 1 0.0703 -6.3771 5.7981 15 7 1.6337 -7.4335 4.8494 16 6 1.6502 -8.4676 5.7468 17 1 1.1604 -8.3603 6.7035 18 6 2.2973 -9.6534 5.4276 19 7 2.8946 -9.7840 4.2620 20 14 2.3204 -11.0638 6.6522 21 1 3.0697 -12.2086 6.0747 22 1 2.9820 -10.6204 7.9055 23 1 0.9275 -11.4840 6.9496 24 6 0.5676 -5.4075 3.9079 25 1 -0.3865 -4.9008 4.0536 26 6 0.4724 -6.3722 2.7242 27 6 2.4037 -1.2536 3.4386 28 6 1.7484 -0.3081 2.4561 29 8 1.0777 0.6553 2.7610 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 3.8975 -1.6179 0.9542 38 1 2.4952 -2.5976 0.4310 39 1 3.0517 -3.5820 4.9980 40 1 3.4647 -5.2077 4.3720 41 1 1.3645 -4.4601 6.4800 42 1 2.6109 -5.7508 6.5530 43 1 2.0739 -7.5297 3.9904 44 1 3.3465 -10.6128 4.0387 45 1 -0.2877 -7.1259 2.9299 46 1 0.2013 -5.8186 1.8253 47 1 1.4359 -6.8594 2.5742 48 1 1.7071 -1.5213 4.2331 49 1 3.3053 -0.8068 3.8577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074675785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:03 Heat of formation + Delta-G solvation = -69.082759 kcal Electronic energy + Delta-G solvation = -28944.710699 eV Core-core repulsion = 25099.320546 eV Total energy + Delta-G solvation = -3845.390152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06897 -40.78365 -38.88883 -37.31317 -35.92852 -35.68576 -33.37840 -32.22430 -31.37016 -30.24425 -28.68366 -28.13197 -26.73382 -25.60941 -24.83503 -23.42766 -22.91927 -20.95892 -19.97575 -19.78296 -19.37503 -18.37717 -17.65833 -17.52042 -16.71113 -16.50747 -16.25756 -15.81783 -15.63428 -15.38445 -15.14843 -14.77577 -14.62581 -14.52268 -14.28897 -14.19566 -13.92922 -13.67977 -13.58615 -13.23969 -13.08921 -12.95282 -12.88507 -12.81379 -12.63333 -12.59017 -12.50601 -12.31913 -12.22612 -12.19791 -12.08897 -12.08603 -11.62203 -11.43339 -10.88956 -10.72789 -10.64159 -9.68139 -9.60498 -8.96902 -7.90266 -5.17843 1.51183 1.51521 1.52923 1.58624 1.62996 1.95401 2.07769 2.59353 3.27074 3.38170 3.40580 3.46303 3.77941 3.84510 3.90116 3.96642 4.02215 4.10531 4.27386 4.29327 4.33275 4.35554 4.42602 4.56625 4.61580 4.63521 4.68604 4.70654 4.76130 4.81393 4.83620 4.87106 4.87647 4.90597 4.97886 5.09489 5.20283 5.26262 5.29806 5.35728 5.41519 5.47188 5.59127 5.69087 6.18280 6.31471 6.62477 7.16436 7.18209 7.39228 8.13198 8.37038 9.32701 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.030300 B = 0.002762 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.860710 B =10133.939698 C =10358.287334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 C -0.157 4.157 4 N -0.608 5.608 5 C 0.119 3.881 6 C -0.113 4.113 7 H 0.155 0.845 8 C 0.526 3.474 9 O -0.574 6.574 10 N -0.606 5.606 11 C 0.108 3.892 12 C -0.148 4.148 13 C 0.162 3.838 14 H 0.066 0.934 15 N -0.724 5.724 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.071 4.071 19 N -0.968 5.968 20 Si 0.967 3.033 21 H -0.301 1.301 22 H -0.277 1.277 23 H -0.283 1.283 24 C 0.133 3.867 25 H 0.074 0.926 26 C -0.134 4.134 27 C -0.133 4.133 28 C 0.508 3.492 29 O -0.575 6.575 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.378 0.622 44 H 0.249 0.751 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.043 0.957 48 H 0.098 0.902 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 20.122 -5.090 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.215 4.215 4 N -0.341 5.341 5 C -0.004 4.004 6 C -0.134 4.134 7 H 0.173 0.827 8 C 0.315 3.685 9 O -0.454 6.454 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.189 4.189 13 C 0.052 3.948 14 H 0.084 0.916 15 N -0.365 5.365 16 C -0.367 4.367 17 H 0.096 0.904 18 C -0.264 4.264 19 N -0.619 5.619 20 Si 0.797 3.203 21 H -0.228 1.228 22 H -0.203 1.203 23 H -0.209 1.209 24 C 0.028 3.972 25 H 0.092 0.908 26 C -0.192 4.192 27 C -0.173 4.173 28 C 0.297 3.703 29 O -0.455 6.455 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.213 0.787 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.116 0.884 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.820 20.565 -5.385 21.444 hybrid contribution -0.183 -1.504 0.202 1.529 sum 2.637 19.060 -5.184 19.928 Atomic orbital electron populations 1.22102 0.95928 1.01373 1.02530 1.21101 0.93741 0.93735 0.86943 1.22093 1.01695 0.94928 1.02752 1.48494 1.50597 1.28983 1.06035 1.22170 0.96412 0.85855 0.95950 1.22364 0.99695 0.93625 0.97727 0.82744 1.20598 0.86870 0.81275 0.79735 1.90682 1.41696 1.73565 1.39442 1.48779 1.23780 1.33625 1.27664 1.22411 0.90327 1.01997 0.86677 1.23357 0.99738 0.98817 0.97003 1.21396 0.94916 0.85891 0.92616 0.91635 1.42659 1.64098 1.11042 1.18750 1.19558 1.27001 0.92706 0.97388 0.90396 1.25439 1.01633 1.00596 0.98709 1.69796 1.41979 1.26898 1.23200 0.85308 0.77295 0.79097 0.78594 1.22796 1.20258 1.20928 1.21862 0.90890 0.88821 0.95589 0.90817 1.21734 1.01316 0.98349 0.97845 1.22337 1.04641 0.93022 0.97313 1.21246 0.79396 0.84772 0.84866 1.90659 1.41607 1.31009 1.82267 0.89537 0.93974 0.94003 0.87296 0.91384 0.89762 0.93744 0.86311 0.90407 0.87073 0.92107 0.89289 0.90603 0.78735 0.94219 0.92848 0.92988 0.93777 0.88355 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.20 71.98 0.66 -2.92 16 2 C 0.15 2.72 3.47 44.99 0.16 2.87 16 3 C -0.16 -2.55 9.20 71.98 0.66 -1.89 16 4 N -0.61 -12.45 2.83 -794.03 -2.25 -14.70 16 5 C 0.12 1.88 6.51 86.83 0.57 2.45 16 6 C -0.11 -1.87 2.70 -10.48 -0.03 -1.90 16 7 H 0.15 1.53 7.53 -2.39 -0.02 1.52 16 8 C 0.53 14.17 6.80 87.66 0.60 14.76 16 9 O -0.57 -19.98 14.75 -3.04 -0.04 -20.03 16 10 N -0.61 -16.72 3.08 -786.91 -2.42 -19.15 16 11 C 0.11 2.52 6.42 86.86 0.56 3.07 16 12 C -0.15 -4.07 6.77 31.99 0.22 -3.86 16 13 C 0.16 5.70 3.46 46.18 0.16 5.86 16 14 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 15 N -0.72 -33.00 4.61 -317.33 -1.46 -34.46 16 16 C -0.23 -12.02 9.97 84.03 0.84 -11.18 16 17 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 18 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 19 N -0.97 -56.63 13.06 21.65 0.28 -56.35 16 20 Si 0.97 44.20 29.55 68.60 2.03 46.23 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.13 4.38 3.48 45.26 0.16 4.54 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.13 -5.04 8.47 71.98 0.61 -4.43 16 27 C -0.13 -2.19 6.31 30.59 0.19 -2.00 16 28 C 0.51 12.40 7.41 87.90 0.65 13.05 16 29 O -0.57 -18.50 15.12 -3.02 -0.05 -18.55 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.16 6.80 -2.39 -0.02 1.14 16 33 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.04 0.98 6.77 -2.39 -0.02 0.97 16 37 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.50 7.35 -2.38 -0.02 1.49 16 39 H 0.11 1.65 7.44 -2.39 -0.02 1.63 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.38 18.84 5.58 -92.71 -0.52 18.33 16 44 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 45 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.05 1.96 6.79 -2.39 -0.02 1.94 16 47 H 0.04 1.84 6.21 -2.39 -0.01 1.82 16 48 H 0.10 1.81 7.90 -2.39 -0.02 1.79 16 49 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -72.76 384.24 2.97 -69.79 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.42 Total: 32.22 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 6.46 Total: 15.01 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -5.85 Total: -124.66 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.09 Total: -38.58 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.76 2.97 -69.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074675785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.704 kcal (2) G-P(sol) polarization free energy of solvation -72.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds