Wall clock time and date at job start Tue Mar 31 2020 14:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.29995 * 2 1 4 4 C 1.52926 * 109.29754 * 119.58275 * 2 1 3 5 5 C 1.53341 * 108.67557 * 69.35226 * 4 2 1 6 6 H 1.09001 * 109.67575 * 307.79543 * 5 4 2 7 7 C 1.50697 * 109.67211 * 187.30161 * 5 4 2 8 8 O 1.21271 * 120.00345 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99669 * 180.02562 * 7 5 4 10 10 C 1.46498 * 120.00071 * 179.97438 * 9 7 5 11 11 C 1.52992 * 109.47594 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47432 * 174.93234 * 11 10 9 13 13 C 1.52992 * 115.54997 * 65.29163 * 12 11 10 14 14 N 1.46498 * 109.47421 * 65.14596 * 13 12 11 15 15 C 1.36939 * 120.00016 * 175.04571 * 14 13 12 16 16 H 1.07998 * 120.00359 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99749 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00113 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99894 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47097 * 60.00107 * 19 17 15 21 21 H 1.48499 * 109.47136 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47068 * 299.99800 * 19 17 15 23 23 C 1.52994 * 117.49609 * 279.62003 * 12 11 10 24 24 C 1.52998 * 117.49880 * 210.95932 * 12 11 10 25 25 C 1.53068 * 108.42626 * 67.52834 * 5 4 2 26 26 C 1.50175 * 109.89189 * 311.09805 * 25 5 4 27 27 O 1.21278 * 118.24676 * 197.60465 * 26 25 5 28 28 N 1.33094 * 123.42426 * 17.77482 * 26 25 5 29 29 H 1.08998 * 109.46905 * 300.00444 * 1 2 3 30 30 H 1.08997 * 109.47059 * 59.99952 * 1 2 3 31 31 H 1.08993 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.59965 * 189.10740 * 4 2 1 33 33 H 1.09001 * 109.60199 * 309.59345 * 4 2 1 34 34 H 0.96997 * 120.00398 * 359.97438 * 9 7 5 35 35 H 1.09003 * 109.46919 * 300.00114 * 10 9 7 36 36 H 1.09004 * 109.47438 * 59.99603 * 10 9 7 37 37 H 1.09002 * 109.47415 * 294.93500 * 11 10 9 38 38 H 1.09000 * 109.47389 * 54.93198 * 11 10 9 39 39 H 1.09000 * 109.47242 * 185.15135 * 13 12 11 40 40 H 1.09010 * 109.47022 * 305.15170 * 13 12 11 41 41 H 0.97001 * 119.99907 * 355.04995 * 14 13 12 42 42 H 0.96998 * 119.99833 * 179.97438 * 18 17 15 43 43 H 1.08999 * 117.50585 * 359.97438 * 23 12 11 44 44 H 1.09005 * 117.49554 * 145.02047 * 23 12 11 45 45 H 1.09000 * 117.49670 * 214.97890 * 24 12 11 46 46 H 1.09004 * 117.49845 * 359.97438 * 24 12 11 47 47 H 1.08996 * 109.40330 * 71.22944 * 25 5 4 48 48 H 1.09004 * 109.40540 * 190.97257 * 25 5 4 49 49 H 0.97000 * 117.74408 * 177.61429 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0355 -0.7125 1.2552 5 6 1.7143 -2.2071 1.1343 6 1 0.6571 -2.3377 0.9030 7 6 2.0394 -2.9023 2.4312 8 8 2.4853 -2.2684 3.3639 9 7 1.8356 -4.2289 2.5541 10 6 2.1521 -4.9050 3.8146 11 6 1.8299 -6.3953 3.6890 12 6 2.2772 -7.1226 4.9587 13 6 1.5317 -6.7366 6.2377 14 7 0.1275 -7.1387 6.1247 15 6 -0.7162 -6.9869 7.1926 16 1 -0.3464 -6.5712 8.1182 17 6 -2.0466 -7.3684 7.0856 18 7 -2.4970 -7.8765 5.9581 19 14 -3.1974 -7.1621 8.5426 20 1 -3.2649 -5.7276 8.9208 21 1 -4.5537 -7.6416 8.1739 22 1 -2.6885 -7.9535 9.6913 23 6 3.7604 -7.4762 5.0848 24 6 2.7309 -8.5769 4.8170 25 6 2.5652 -2.7951 0.0060 26 6 2.4542 -1.9343 -1.2195 27 8 2.7881 -2.4071 -2.2852 28 7 2.0118 -0.6792 -1.1962 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1132 -0.5762 1.3442 33 1 1.5387 -0.3016 2.1341 34 1 1.4793 -4.7361 1.8080 35 1 3.2116 -4.7795 4.0381 36 1 1.5574 -4.4716 4.6188 37 1 0.7559 -6.5249 3.5553 38 1 2.3556 -6.8095 2.8287 39 1 1.9867 -7.2413 7.0899 40 1 1.5902 -5.6576 6.3807 41 1 -0.2046 -7.5125 5.2935 42 1 -3.4266 -8.1434 5.8835 43 1 4.4175 -7.1911 4.2633 44 1 4.2049 -7.4341 6.0792 45 1 2.4986 -9.2585 5.6353 46 1 2.7103 -9.0157 3.8194 47 1 3.6068 -2.8401 0.3238 48 1 2.2148 -3.8011 -0.2253 49 1 2.0073 -0.1864 -2.0317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165912923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:59 Heat of formation + Delta-G solvation = -55.166513 kcal Electronic energy + Delta-G solvation = -27529.656530 eV Core-core repulsion = 23684.869831 eV Total energy + Delta-G solvation = -3844.786699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12730 -39.55569 -38.29017 -37.13831 -34.89721 -33.92127 -33.67412 -31.41673 -30.79623 -29.92807 -27.56896 -26.02525 -25.23570 -23.29393 -22.78157 -22.55565 -21.79809 -20.60054 -19.25078 -18.60823 -17.69571 -17.12273 -16.95806 -16.78035 -15.83534 -15.66688 -15.51293 -15.07979 -14.70247 -14.50825 -14.44307 -14.15333 -13.98471 -13.68477 -13.34957 -13.12249 -12.94600 -12.67181 -12.55568 -12.33170 -12.10458 -11.93299 -11.74768 -11.40465 -11.35173 -11.27630 -11.19630 -10.96827 -10.82524 -10.62711 -10.42768 -10.16246 -9.92288 -9.77342 -9.64376 -9.52604 -9.31039 -9.04892 -8.83455 -6.89983 -5.76115 -3.03802 2.27982 2.51413 2.87117 3.04425 3.44350 3.48693 3.49547 4.03722 4.06931 4.18474 4.26503 4.29083 4.61541 4.67655 4.74355 4.83569 4.90919 4.98060 5.07518 5.15534 5.16708 5.26500 5.30722 5.33763 5.44714 5.51280 5.53315 5.58367 5.68749 5.71287 5.76430 5.83150 5.89341 6.15289 6.16427 6.21934 6.37775 6.40179 6.44867 6.46613 6.51859 6.76690 6.82983 6.94270 7.42714 7.70277 7.84224 8.13417 8.43150 9.54693 10.12982 10.48616 11.46711 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.002674 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.689477 B =10470.015373 C =11717.034324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.135 3.865 3 H 0.092 0.908 4 C -0.112 4.112 5 C -0.114 4.114 6 H 0.108 0.892 7 C 0.518 3.482 8 O -0.536 6.536 9 N -0.725 5.725 10 C 0.123 3.877 11 C -0.089 4.089 12 C -0.120 4.120 13 C 0.187 3.813 14 N -0.727 5.727 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.178 4.178 24 C -0.163 4.163 25 C -0.127 4.127 26 C 0.526 3.474 27 O -0.557 6.557 28 N -0.714 5.714 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.670 13.197 -13.981 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.030 3.970 3 H 0.110 0.890 4 C -0.150 4.150 5 C -0.136 4.136 6 H 0.126 0.874 7 C 0.303 3.697 8 O -0.412 6.412 9 N -0.375 5.375 10 C 0.000 4.000 11 C -0.127 4.127 12 C -0.121 4.121 13 C 0.060 3.940 14 N -0.371 5.371 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.215 4.215 24 C -0.200 4.200 25 C -0.167 4.167 26 C 0.312 3.688 27 O -0.435 6.435 28 N -0.366 5.366 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.233 0.767 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 11.099 13.306 -13.443 21.931 hybrid contribution -1.120 -0.154 -0.033 1.131 sum 9.979 13.153 -13.476 21.312 Atomic orbital electron populations 1.22357 0.94688 1.03088 1.02933 1.21052 0.94619 0.96729 0.84559 0.89016 1.21762 1.03175 0.92622 0.97457 1.21519 1.02422 0.96520 0.93134 0.87364 1.20285 0.78068 0.82216 0.89152 1.90723 1.44547 1.65146 1.40816 1.46070 1.66139 1.08415 1.16914 1.21401 1.00982 0.92122 0.85502 1.21221 1.02808 0.92839 0.95800 1.21552 0.95724 0.97632 0.97148 1.20193 0.85821 0.96674 0.91355 1.42272 1.03889 1.76016 1.14930 1.19191 0.90544 1.34611 0.92578 0.91331 1.24709 0.97153 1.01865 0.97205 1.69646 1.15232 1.48565 1.24828 0.86283 0.80266 0.77722 0.82021 1.21292 1.21722 1.21329 1.23003 0.91697 1.04367 1.02469 1.22938 1.02877 0.91625 1.02601 1.21658 1.03051 1.00063 0.91967 1.19902 0.76181 0.82011 0.90657 1.90787 1.49805 1.71686 1.31251 1.45553 1.64845 1.13729 1.12462 0.90768 0.91997 0.91860 0.90100 0.88391 0.76660 0.91601 0.90459 0.89865 0.91997 0.96004 0.96098 0.78192 0.93547 0.89317 0.88979 0.88560 0.89344 0.87555 0.87470 0.76565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.30 37.16 0.35 -0.53 16 2 C 0.14 0.72 3.84 -68.37 -0.26 0.46 16 3 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 4 C -0.11 -0.81 4.14 -26.59 -0.11 -0.92 16 5 C -0.11 -0.92 2.54 -91.56 -0.23 -1.15 16 6 H 0.11 0.76 6.38 -51.93 -0.33 0.43 16 7 C 0.52 6.01 7.13 -10.99 -0.08 5.93 16 8 O -0.54 -8.31 15.90 5.56 0.09 -8.22 16 9 N -0.72 -8.01 5.47 -60.30 -0.33 -8.34 16 10 C 0.12 1.67 5.41 -4.05 -0.02 1.64 16 11 C -0.09 -1.22 5.12 -26.73 -0.14 -1.35 16 12 C -0.12 -1.85 1.56 -154.51 -0.24 -2.10 16 13 C 0.19 3.72 5.93 -4.05 -0.02 3.70 16 14 N -0.73 -17.97 5.52 -59.91 -0.33 -18.30 16 15 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 19 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.18 -2.31 9.94 -26.70 -0.27 -2.57 16 24 C -0.16 -2.37 9.94 -26.69 -0.27 -2.63 16 25 C -0.13 -1.00 5.21 -28.10 -0.15 -1.14 16 26 C 0.53 5.00 7.71 -11.99 -0.09 4.91 16 27 O -0.56 -7.62 17.78 5.56 0.10 -7.52 16 28 N -0.71 -4.87 5.02 -54.91 -0.28 -5.15 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.38 6.52 -51.93 -0.34 0.04 16 32 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.10 0.76 7.88 -51.93 -0.41 0.36 16 34 H 0.40 3.42 8.24 -40.82 -0.34 3.09 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.29 7.23 -51.93 -0.38 0.91 16 37 H 0.08 1.32 7.49 -51.93 -0.39 0.93 16 38 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.02 0.43 7.11 -51.92 -0.37 0.06 16 41 H 0.38 9.93 7.03 -40.82 -0.29 9.64 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 48 H 0.11 0.74 7.98 -51.93 -0.41 0.33 16 49 H 0.40 2.36 8.79 -40.82 -0.36 2.00 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -34.70 395.20 -9.09 -43.79 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -8.22 Total: 10.56 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.78 Total: -3.00 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.21 Total: -58.91 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.19 Total: -15.74 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.70 -9.09 -43.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165912923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.376 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds