Wall clock time and date at job start Tue Mar 31 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34784 * 127.83336 * 219.58574 * 5 4 2 7 7 O 1.21276 * 119.99520 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00103 * 359.97438 * 6 5 4 9 9 H 1.09008 * 109.59911 * 59.67922 * 8 6 5 10 10 C 1.53344 * 109.60192 * 180.02562 * 8 6 5 11 11 C 1.53066 * 108.42808 * 187.29069 * 10 8 6 12 12 C 1.50182 * 109.89010 * 311.10072 * 11 10 8 13 13 O 1.21282 * 118.24544 * 197.55831 * 12 11 10 14 14 N 1.33352 * 123.50719 * 17.58020 * 12 11 10 15 15 C 1.45754 * 124.10596 * 357.77795 * 14 12 11 16 16 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 17 17 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 18 18 C 1.53007 * 110.34168 * 0.10066 * 17 2 1 19 19 C 1.53006 * 110.34387 * 237.84933 * 17 2 1 20 20 N 1.46497 * 109.47126 * 179.97438 * 19 17 2 21 21 C 1.36939 * 119.99647 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99952 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99793 * 179.97438 * 21 20 19 24 24 N 1.31614 * 119.99824 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99763 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47660 * 90.00005 * 25 23 21 27 27 H 1.48503 * 109.46955 * 210.00179 * 25 23 21 28 28 H 1.48501 * 109.47119 * 329.99502 * 25 23 21 29 29 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 30 30 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 31 31 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 32 32 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 33 33 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 34 34 H 1.09004 * 109.67315 * 307.01944 * 10 8 6 35 35 H 1.09000 * 109.67715 * 67.51965 * 10 8 6 36 36 H 1.09003 * 109.40289 * 71.22483 * 11 10 8 37 37 H 1.08996 * 109.40682 * 191.05870 * 11 10 8 38 38 H 0.96991 * 117.94745 * 177.77841 * 14 12 11 39 39 H 1.09002 * 109.30437 * 258.76552 * 15 14 12 40 40 H 1.09006 * 109.30484 * 139.38686 * 15 14 12 41 41 H 1.08998 * 110.41105 * 201.63246 * 16 5 4 42 42 H 1.09004 * 110.40870 * 79.19127 * 16 5 4 43 43 H 1.09003 * 109.46654 * 60.00458 * 18 17 2 44 44 H 1.09005 * 109.46780 * 180.02562 * 18 17 2 45 45 H 1.08997 * 109.47148 * 300.00308 * 18 17 2 46 46 H 1.09000 * 109.46800 * 299.99898 * 19 17 2 47 47 H 1.08996 * 109.47126 * 59.99440 * 19 17 2 48 48 H 0.96996 * 120.00039 * 359.97438 * 20 19 17 49 49 H 0.97003 * 119.99849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4461 -1.6626 -1.3514 7 8 5.3405 -2.2698 -0.8017 8 6 4.6501 -1.1140 -2.7400 9 1 4.5200 -0.0318 -2.7283 10 6 6.0631 -1.4576 -3.2265 11 6 6.3063 -0.7367 -4.5547 12 6 5.1492 -0.9715 -5.4828 13 8 5.3092 -0.7562 -6.6655 14 7 3.9550 -1.4036 -5.0758 15 6 3.6364 -1.7452 -3.6952 16 6 2.8824 -1.9401 0.6333 17 6 2.0663 -0.7703 1.2244 18 6 0.9061 -1.3037 2.0673 19 6 2.9671 0.1335 2.0687 20 7 3.4647 -0.6159 3.2250 21 6 4.2958 -0.0088 4.1282 22 1 4.5840 1.0227 3.9884 23 6 4.7669 -0.7187 5.2242 24 7 4.4144 -1.9752 5.3953 25 14 5.9000 0.1098 6.4567 26 1 5.0888 0.7415 7.5282 27 1 6.8066 -0.9033 7.0543 28 1 6.7055 1.1496 5.7674 29 1 -0.3633 0.5029 0.8962 30 1 -0.3634 0.5247 -0.8837 31 1 -0.3634 -1.0276 -0.0126 32 1 1.3271 -1.4869 -1.5790 33 1 2.3421 -0.0790 -2.0198 34 1 6.7954 -1.1267 -2.4900 35 1 6.1496 -2.5345 -3.3716 36 1 6.4128 0.3326 -4.3721 37 1 7.2189 -1.1185 -5.0122 38 1 3.2545 -1.4963 -5.7403 39 1 3.6574 -2.8287 -3.5781 40 1 2.6383 -1.3792 -3.4545 41 1 3.7692 -2.1288 1.2384 42 1 2.2675 -2.8377 0.5681 43 1 0.2972 -1.9761 1.4630 44 1 1.3006 -1.8444 2.9277 45 1 0.2941 -0.4701 2.4119 46 1 3.8091 0.4728 1.4655 47 1 2.3962 0.9956 2.4133 48 1 3.2055 -1.5421 3.3507 49 1 4.7439 -2.4714 6.1609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181977654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:42 Heat of formation + Delta-G solvation = -61.833032 kcal Electronic energy + Delta-G solvation = -28851.261847 eV Core-core repulsion = 25006.186066 eV Total energy + Delta-G solvation = -3845.075781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01655 -40.04168 -38.49760 -36.41322 -34.83543 -33.38433 -33.27848 -31.59439 -30.52616 -29.53695 -27.09373 -25.82805 -25.73484 -24.99480 -23.54722 -22.97429 -21.20825 -20.17628 -19.04811 -18.42682 -17.77144 -17.23090 -16.88838 -16.33818 -15.93640 -15.63499 -15.21324 -14.91939 -14.70022 -14.41337 -14.39488 -13.98172 -13.76356 -13.67767 -13.38141 -13.04475 -12.91140 -12.73289 -12.32047 -12.18896 -12.00946 -11.87606 -11.60705 -11.51249 -11.46183 -11.33055 -11.25627 -10.99327 -10.82618 -10.53177 -10.35799 -10.21848 -10.05094 -9.92527 -9.80035 -9.60166 -9.46947 -8.86936 -8.66043 -6.90729 -5.75436 -3.03551 2.33150 2.54663 2.81842 2.99474 3.44642 3.50036 3.51749 4.12043 4.17475 4.31527 4.36370 4.48897 4.59069 4.69056 4.74848 4.87998 4.93196 4.98621 5.05353 5.21574 5.28275 5.30643 5.33098 5.43733 5.48171 5.53217 5.61984 5.66256 5.71346 5.79911 5.87115 5.91014 5.97087 6.07739 6.12912 6.18055 6.25829 6.39276 6.39400 6.49934 6.66534 6.76546 6.84456 6.93144 7.58059 7.71068 7.87345 8.15606 8.43524 9.54952 10.11654 10.46141 11.47486 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003324 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.220471 B = 8421.275989 C = 9732.139318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.101 3.899 5 N -0.618 5.618 6 C 0.540 3.460 7 O -0.523 6.523 8 C -0.121 4.121 9 H 0.106 0.894 10 C -0.105 4.105 11 C -0.136 4.136 12 C 0.520 3.480 13 O -0.559 6.559 14 N -0.718 5.718 15 C 0.117 3.883 16 C 0.113 3.887 17 C -0.076 4.076 18 C -0.134 4.134 19 C 0.169 3.831 20 N -0.729 5.729 21 C -0.239 4.239 22 H 0.068 0.932 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.401 0.599 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.016 0.984 47 H 0.020 0.980 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 1.622 -19.326 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.022 4.022 5 N -0.352 5.352 6 C 0.327 3.673 7 O -0.398 6.398 8 C -0.142 4.142 9 H 0.124 0.876 10 C -0.143 4.143 11 C -0.175 4.175 12 C 0.308 3.692 13 O -0.438 6.438 14 N -0.370 5.370 15 C -0.008 4.008 16 C -0.009 4.009 17 C -0.077 4.077 18 C -0.192 4.192 19 C 0.042 3.958 20 N -0.374 5.374 21 C -0.370 4.370 22 H 0.086 0.914 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.237 0.763 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.225 1.512 -19.437 20.792 hybrid contribution 0.133 0.184 0.709 0.744 sum -7.092 1.696 -18.729 20.098 Atomic orbital electron populations 1.21893 0.94098 1.02127 1.01806 1.22152 0.96095 0.99772 0.93814 0.89955 1.22613 0.87074 0.95473 0.97067 1.48945 1.12428 1.55650 1.18152 1.19718 0.80791 0.80140 0.86679 1.90785 1.40762 1.41063 1.67174 1.21590 0.97642 1.02567 0.92430 0.87554 1.21520 0.95044 1.01761 0.96006 1.21703 0.97187 1.03626 0.95020 1.20295 0.84060 0.75657 0.89211 1.90766 1.82996 1.52129 1.17928 1.45421 1.13559 1.67777 1.10280 1.21426 0.98463 1.00518 0.80368 1.22573 1.00473 0.95757 0.82103 1.21714 0.95990 0.95455 0.94537 1.21871 0.96583 1.00888 0.99813 1.20638 0.93660 0.92930 0.88599 1.42384 1.57382 1.12880 1.24732 1.19187 1.20553 0.95686 1.01550 0.91375 1.24710 1.01075 0.96075 0.98968 1.69644 1.49055 1.08477 1.30944 0.86204 0.80419 0.78181 0.81471 1.21798 1.21770 1.20822 0.91662 0.93075 0.92073 0.90840 0.90610 0.88978 0.90271 0.87870 0.87555 0.76312 0.90865 0.89579 0.88181 0.91489 0.93101 0.91251 0.92166 0.96573 0.96268 0.78099 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.94 37.16 0.29 -0.87 16 2 C -0.10 -1.02 3.30 -89.22 -0.29 -1.31 16 3 H 0.08 0.89 7.71 -51.93 -0.40 0.48 16 4 C 0.10 0.87 4.94 -2.41 -0.01 0.86 16 5 N -0.62 -7.74 3.31 -169.31 -0.56 -8.30 16 6 C 0.54 7.29 7.25 -10.98 -0.08 7.21 16 7 O -0.52 -9.61 16.16 5.56 0.09 -9.52 16 8 C -0.12 -1.10 1.91 -91.64 -0.18 -1.28 16 9 H 0.11 0.85 7.92 -51.92 -0.41 0.44 16 10 C -0.11 -0.98 4.71 -26.52 -0.12 -1.11 16 11 C -0.14 -1.13 6.03 -28.10 -0.17 -1.29 16 12 C 0.52 5.30 7.71 -11.87 -0.09 5.21 16 13 O -0.56 -7.92 17.78 5.56 0.10 -7.82 16 14 N -0.72 -5.49 5.45 -61.39 -0.33 -5.82 16 15 C 0.12 0.81 6.15 -4.49 -0.03 0.78 16 16 C 0.11 1.71 5.91 -2.41 -0.01 1.70 16 17 C -0.08 -1.08 0.73 -153.10 -0.11 -1.19 16 18 C -0.13 -1.84 7.11 37.16 0.26 -1.57 16 19 C 0.17 3.26 4.95 -4.04 -0.02 3.24 16 20 N -0.73 -17.90 4.79 -59.91 -0.29 -18.18 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 25 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.06 0.58 6.89 -51.93 -0.36 0.23 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.47 6.69 -51.93 -0.35 0.13 16 32 H 0.07 0.50 7.84 -51.93 -0.41 0.10 16 33 H 0.08 0.50 6.47 -51.93 -0.34 0.16 16 34 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 35 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 2.57 8.80 -40.82 -0.36 2.21 16 39 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.09 0.43 5.71 -51.93 -0.30 0.14 16 41 H 0.10 2.01 6.94 -51.93 -0.36 1.65 16 42 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 43 H 0.05 0.56 6.72 -51.93 -0.35 0.21 16 44 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 45 H 0.06 0.79 6.84 -51.93 -0.36 0.44 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 9.83 5.99 -40.82 -0.24 9.59 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -35.34 375.64 -8.33 -43.68 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.89 Total: 6.98 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.81 Total: 3.13 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.46 Total: -59.66 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.19 Total: -17.35 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.34 -8.33 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181977654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.157 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds