Wall clock time and date at job start Tue Mar 31 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34784 * 127.83336 * 219.58574 * 5 4 2 7 7 O 1.21276 * 119.99520 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00103 * 359.97438 * 6 5 4 9 9 H 1.09008 * 109.59911 * 59.67922 * 8 6 5 10 10 C 1.53344 * 109.60192 * 180.02562 * 8 6 5 11 11 C 1.53066 * 108.42808 * 187.29069 * 10 8 6 12 12 C 1.50182 * 109.89010 * 311.10072 * 11 10 8 13 13 O 1.21282 * 118.24544 * 197.55831 * 12 11 10 14 14 N 1.33352 * 123.50719 * 17.58020 * 12 11 10 15 15 C 1.45754 * 124.10596 * 357.77795 * 14 12 11 16 16 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 17 17 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 18 18 C 1.53007 * 110.34168 * 0.10066 * 17 2 1 19 19 C 1.53006 * 110.34387 * 237.84933 * 17 2 1 20 20 N 1.46497 * 109.47126 * 179.97438 * 19 17 2 21 21 C 1.36939 * 119.99647 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99952 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99793 * 179.97438 * 21 20 19 24 24 N 1.31614 * 119.99824 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99763 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47660 * 90.00005 * 25 23 21 27 27 H 1.48503 * 109.46955 * 210.00179 * 25 23 21 28 28 H 1.48501 * 109.47119 * 329.99502 * 25 23 21 29 29 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 30 30 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 31 31 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 32 32 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 33 33 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 34 34 H 1.09004 * 109.67315 * 307.01944 * 10 8 6 35 35 H 1.09000 * 109.67715 * 67.51965 * 10 8 6 36 36 H 1.09003 * 109.40289 * 71.22483 * 11 10 8 37 37 H 1.08996 * 109.40682 * 191.05870 * 11 10 8 38 38 H 0.96991 * 117.94745 * 177.77841 * 14 12 11 39 39 H 1.09002 * 109.30437 * 258.76552 * 15 14 12 40 40 H 1.09006 * 109.30484 * 139.38686 * 15 14 12 41 41 H 1.08998 * 110.41105 * 201.63246 * 16 5 4 42 42 H 1.09004 * 110.40870 * 79.19127 * 16 5 4 43 43 H 1.09003 * 109.46654 * 60.00458 * 18 17 2 44 44 H 1.09005 * 109.46780 * 180.02562 * 18 17 2 45 45 H 1.08997 * 109.47148 * 300.00308 * 18 17 2 46 46 H 1.09000 * 109.46800 * 299.99898 * 19 17 2 47 47 H 1.08996 * 109.47126 * 59.99440 * 19 17 2 48 48 H 0.96996 * 120.00039 * 359.97438 * 20 19 17 49 49 H 0.97003 * 119.99849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4461 -1.6626 -1.3514 7 8 5.3405 -2.2698 -0.8017 8 6 4.6501 -1.1140 -2.7400 9 1 4.5200 -0.0318 -2.7283 10 6 6.0631 -1.4576 -3.2265 11 6 6.3063 -0.7367 -4.5547 12 6 5.1492 -0.9715 -5.4828 13 8 5.3092 -0.7562 -6.6655 14 7 3.9550 -1.4036 -5.0758 15 6 3.6364 -1.7452 -3.6952 16 6 2.8824 -1.9401 0.6333 17 6 2.0663 -0.7703 1.2244 18 6 0.9061 -1.3037 2.0673 19 6 2.9671 0.1335 2.0687 20 7 3.4647 -0.6159 3.2250 21 6 4.2958 -0.0088 4.1282 22 1 4.5840 1.0227 3.9884 23 6 4.7669 -0.7187 5.2242 24 7 4.4144 -1.9752 5.3953 25 14 5.9000 0.1098 6.4567 26 1 5.0888 0.7415 7.5282 27 1 6.8066 -0.9033 7.0543 28 1 6.7055 1.1496 5.7674 29 1 -0.3633 0.5029 0.8962 30 1 -0.3634 0.5247 -0.8837 31 1 -0.3634 -1.0276 -0.0126 32 1 1.3271 -1.4869 -1.5790 33 1 2.3421 -0.0790 -2.0198 34 1 6.7954 -1.1267 -2.4900 35 1 6.1496 -2.5345 -3.3716 36 1 6.4128 0.3326 -4.3721 37 1 7.2189 -1.1185 -5.0122 38 1 3.2545 -1.4963 -5.7403 39 1 3.6574 -2.8287 -3.5781 40 1 2.6383 -1.3792 -3.4545 41 1 3.7692 -2.1288 1.2384 42 1 2.2675 -2.8377 0.5681 43 1 0.2972 -1.9761 1.4630 44 1 1.3006 -1.8444 2.9277 45 1 0.2941 -0.4701 2.4119 46 1 3.8091 0.4728 1.4655 47 1 2.3962 0.9956 2.4133 48 1 3.2055 -1.5421 3.3507 49 1 4.7439 -2.4714 6.1609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181977654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:42 Heat of formation + Delta-G solvation = -88.392824 kcal Electronic energy + Delta-G solvation = -28852.413566 eV Core-core repulsion = 25006.186066 eV Total energy + Delta-G solvation = -3846.227500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.91258 -40.97199 -39.59094 -37.29708 -36.48980 -34.68160 -34.02453 -33.13532 -31.54181 -30.84280 -28.14726 -27.31475 -26.66067 -25.74962 -25.14532 -23.97461 -22.39640 -21.02126 -19.90210 -19.70955 -19.17449 -18.32713 -17.94986 -17.19487 -16.84575 -16.70860 -16.54051 -16.10535 -15.98001 -15.57222 -15.30441 -15.03777 -14.92403 -14.75096 -14.55068 -14.42586 -14.24357 -13.76572 -13.31468 -13.08961 -13.01606 -12.89457 -12.87906 -12.75148 -12.60496 -12.58450 -12.29963 -12.24349 -12.08435 -12.04093 -11.95260 -11.56173 -11.24274 -11.13690 -10.96800 -10.90123 -10.85513 -10.15404 -9.72010 -8.98958 -7.96577 -5.23958 1.43700 1.45908 1.52377 1.53959 1.57946 1.87534 2.28168 2.54055 3.28184 3.36941 3.47803 3.58111 3.59296 3.66380 3.71315 3.81911 4.14666 4.17187 4.20372 4.25895 4.35219 4.38290 4.42967 4.48438 4.60320 4.68604 4.69394 4.77462 4.83978 4.86105 4.91328 4.94137 4.98050 5.04068 5.08966 5.14525 5.17776 5.25940 5.35416 5.44011 5.49331 5.50589 5.71490 5.79909 6.22552 6.26243 6.59538 7.12031 7.15782 7.32808 8.10205 8.32852 9.26928 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.003324 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.220471 B = 8421.275989 C = 9732.139318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.079 0.921 4 C 0.099 3.901 5 N -0.616 5.616 6 C 0.534 3.466 7 O -0.585 6.585 8 C -0.111 4.111 9 H 0.128 0.872 10 C -0.102 4.102 11 C -0.127 4.127 12 C 0.519 3.481 13 O -0.603 6.603 14 N -0.704 5.704 15 C 0.123 3.877 16 C 0.115 3.885 17 C -0.069 4.069 18 C -0.127 4.127 19 C 0.169 3.831 20 N -0.739 5.739 21 C -0.245 4.245 22 H 0.070 0.930 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.971 3.029 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.273 1.273 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.411 0.589 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.028 0.972 45 H 0.066 0.934 46 H 0.000 1.000 47 H 0.021 0.979 48 H 0.376 0.624 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.521 3.014 -21.465 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.323 3.677 7 O -0.465 6.465 8 C -0.132 4.132 9 H 0.146 0.854 10 C -0.141 4.141 11 C -0.167 4.167 12 C 0.307 3.693 13 O -0.486 6.486 14 N -0.355 5.355 15 C -0.001 4.001 16 C -0.009 4.009 17 C -0.071 4.071 18 C -0.184 4.184 19 C 0.043 3.957 20 N -0.383 5.383 21 C -0.377 4.377 22 H 0.088 0.912 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.800 3.200 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.198 1.198 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.248 0.752 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.017 0.983 47 H 0.039 0.961 48 H 0.209 0.791 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.605 2.949 -21.600 23.823 hybrid contribution 0.831 -0.236 1.397 1.643 sum -8.774 2.713 -20.203 22.192 Atomic orbital electron populations 1.21871 0.91722 1.03137 1.02746 1.22142 0.97917 0.99072 0.91973 0.90233 1.22983 0.85866 0.96428 0.96949 1.49045 1.13480 1.55303 1.17025 1.20505 0.80089 0.79172 0.87951 1.90760 1.42864 1.43938 1.68939 1.21559 0.98097 1.03596 0.89968 0.85421 1.21443 0.95156 1.01297 0.96168 1.21659 0.96860 1.04424 0.93752 1.20511 0.84871 0.75223 0.88663 1.90755 1.83770 1.54403 1.19634 1.45311 1.13051 1.66358 1.10800 1.21488 0.99010 1.00538 0.79102 1.22358 0.98288 0.97055 0.83161 1.21616 0.95082 0.94768 0.95588 1.21824 0.96537 1.01308 0.98768 1.20778 0.93857 0.93660 0.87417 1.42579 1.57070 1.12847 1.25761 1.19584 1.20339 0.95818 1.01977 0.91226 1.25522 1.03185 0.96802 1.01143 1.69803 1.50610 1.09868 1.31510 0.85181 0.78477 0.77182 0.79185 1.20992 1.22267 1.19832 0.92628 0.90290 0.91056 0.87419 0.87282 0.90603 0.91263 0.86304 0.87199 0.75192 0.90832 0.86257 0.94128 0.89797 0.89620 0.95312 0.91535 0.98255 0.96072 0.79091 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 7.94 71.98 0.57 -1.01 16 2 C -0.09 -1.56 3.30 -9.89 -0.03 -1.59 16 3 H 0.08 1.44 7.71 -2.39 -0.02 1.42 16 4 C 0.10 1.24 4.94 86.54 0.43 1.67 16 5 N -0.62 -14.42 3.31 -807.97 -2.67 -17.09 16 6 C 0.53 14.12 7.25 87.65 0.64 14.75 16 7 O -0.59 -22.62 16.16 -3.02 -0.05 -22.66 16 8 C -0.11 -1.78 1.91 -11.45 -0.02 -1.80 16 9 H 0.13 1.56 7.92 -2.38 -0.02 1.54 16 10 C -0.10 -1.85 4.71 30.73 0.14 -1.70 16 11 C -0.13 -1.93 6.03 29.71 0.18 -1.75 16 12 C 0.52 9.53 7.71 87.72 0.68 10.21 16 13 O -0.60 -16.32 17.78 -3.03 -0.05 -16.37 16 14 N -0.70 -8.49 5.45 -467.31 -2.55 -11.03 16 15 C 0.12 1.23 6.15 86.49 0.53 1.77 16 16 C 0.11 3.49 5.91 86.54 0.51 4.00 16 17 C -0.07 -1.92 0.73 -51.27 -0.04 -1.96 16 18 C -0.13 -3.35 7.11 71.98 0.51 -2.84 16 19 C 0.17 6.66 4.95 86.38 0.43 7.09 16 20 N -0.74 -37.91 4.79 -343.44 -1.64 -39.55 16 21 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 24 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 25 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 26 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 28 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 29 H 0.05 0.78 6.89 -2.39 -0.02 0.77 16 30 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.71 6.69 -2.38 -0.02 0.69 16 32 H 0.11 0.75 7.84 -2.39 -0.02 0.73 16 33 H 0.11 0.73 6.47 -2.39 -0.02 0.72 16 34 H 0.08 1.63 7.90 -2.38 -0.02 1.61 16 35 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 3.82 8.80 -92.71 -0.82 3.01 16 39 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 40 H 0.12 0.48 5.71 -2.38 -0.01 0.46 16 41 H 0.04 1.74 6.94 -2.39 -0.02 1.72 16 42 H 0.08 2.24 7.83 -2.39 -0.02 2.22 16 43 H 0.09 1.65 6.72 -2.39 -0.02 1.63 16 44 H 0.03 0.98 6.74 -2.38 -0.02 0.97 16 45 H 0.07 1.66 6.84 -2.39 -0.02 1.64 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.38 20.39 5.99 -92.71 -0.55 19.84 16 49 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -83.39 375.64 0.78 -82.61 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.40 Total: 25.09 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.83 Total: 9.68 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.58 Total: -127.82 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.10 Total: -39.04 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -83.39 0.78 -82.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181977654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.782 kcal (2) G-P(sol) polarization free energy of solvation -83.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds