Wall clock time and date at job start Tue Mar 31 2020 14:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00253 * 2 1 4 4 O 1.21284 * 119.99711 * 356.95028 * 3 2 1 5 5 C 1.50690 * 119.99997 * 176.95402 * 3 2 1 6 6 C 1.50700 * 115.55157 * 300.89397 * 5 3 2 7 7 O 1.21280 * 119.99914 * 111.73308 * 6 5 3 8 8 N 1.34782 * 120.00013 * 291.72967 * 6 5 3 9 9 C 1.48139 * 127.83465 * 355.39836 * 8 6 5 10 10 C 1.54397 * 104.61585 * 140.41135 * 9 8 6 11 11 H 1.08996 * 110.34132 * 142.73169 * 10 9 8 12 12 C 1.52993 * 110.34242 * 264.99375 * 10 9 8 13 13 C 1.54282 * 104.95931 * 23.86465 * 10 9 8 14 14 C 1.52996 * 110.34465 * 241.13118 * 13 10 9 15 15 C 1.52997 * 110.43326 * 118.91301 * 13 10 9 16 16 N 1.46501 * 109.47511 * 182.95323 * 15 13 10 17 17 C 1.36940 * 120.00263 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00028 * 0.02562 * 17 16 15 19 19 C 1.38807 * 119.99761 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00494 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00029 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47062 * 59.99710 * 21 19 17 23 23 H 1.48496 * 109.47254 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46944 * 300.00178 * 21 19 17 25 25 C 1.48140 * 127.83538 * 175.39579 * 8 6 5 26 26 C 1.53000 * 117.50006 * 86.56543 * 5 3 2 27 27 C 1.53005 * 117.50026 * 155.22663 * 5 3 2 28 28 H 1.08997 * 109.46872 * 60.00015 * 1 2 3 29 29 H 1.09004 * 109.47583 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47251 * 299.99902 * 1 2 3 31 31 H 0.97003 * 119.99735 * 179.97438 * 2 1 3 32 32 H 1.09004 * 110.40560 * 259.19101 * 9 8 6 33 33 H 1.08995 * 110.41043 * 21.62898 * 9 8 6 34 34 H 1.09000 * 109.47209 * 58.54293 * 12 10 9 35 35 H 1.08998 * 109.47017 * 178.54701 * 12 10 9 36 36 H 1.08998 * 109.47272 * 298.54236 * 12 10 9 37 37 H 1.09003 * 109.47248 * 176.99171 * 14 13 10 38 38 H 1.09002 * 109.46681 * 296.98942 * 14 13 10 39 39 H 1.08998 * 109.47484 * 56.98701 * 14 13 10 40 40 H 1.08993 * 109.47768 * 302.95999 * 15 13 10 41 41 H 1.09003 * 109.46785 * 62.95841 * 15 13 10 42 42 H 0.97007 * 119.99734 * 0.02562 * 16 15 13 43 43 H 0.97005 * 120.00430 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.41157 * 338.36995 * 25 8 6 45 45 H 1.08996 * 110.40801 * 100.68787 * 25 8 6 46 46 H 1.09002 * 117.49976 * 215.00138 * 26 5 3 47 47 H 1.09004 * 117.50240 * 0.02562 * 26 5 3 48 48 H 1.09000 * 117.49518 * 359.97112 * 27 5 3 49 49 H 1.08995 * 117.50287 * 144.97638 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5338 2.2168 -0.0559 5 6 3.6442 1.1680 0.0693 6 6 4.2394 0.5015 1.2829 7 8 4.8586 -0.5344 1.1633 8 7 4.0836 1.0568 2.5011 9 6 3.4483 2.3528 2.8345 10 6 2.6548 2.0759 4.1297 11 1 2.7037 2.9375 4.7955 12 6 1.1993 1.7391 3.7999 13 6 3.3541 0.8605 4.7730 14 6 2.3808 -0.3144 4.8869 15 6 3.9048 1.2293 6.1520 16 7 4.6244 0.0831 6.7130 17 6 5.2071 0.1786 7.9486 18 1 5.1358 1.0986 8.5096 19 6 5.8893 -0.9073 8.4799 20 7 5.9758 -2.0288 7.7964 21 14 6.6836 -0.7774 10.1656 22 1 5.6430 -0.4757 11.1812 23 1 7.3444 -2.0641 10.5019 24 1 7.6943 0.3106 10.1541 25 6 4.5089 0.5094 3.8103 26 6 4.4122 1.0511 -1.2488 27 6 4.3770 2.3851 -0.4988 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.2080 3.1146 3.0097 33 1 2.7751 2.6628 2.0353 34 1 1.1672 0.8682 3.1452 35 1 0.6591 1.5212 4.7212 36 1 0.7345 2.5879 3.2984 37 1 2.9029 -1.1808 5.2932 38 1 1.5586 -0.0423 5.5488 39 1 1.9873 -0.5573 3.8998 40 1 4.5860 2.0748 6.0570 41 1 3.0805 1.4992 6.8121 42 1 4.6881 -0.7434 6.2093 43 1 6.4529 -2.7875 8.1675 44 1 4.6360 -0.5714 3.7473 45 1 5.4353 0.9818 4.1369 46 1 5.3480 0.4922 -1.2382 47 1 3.8287 0.9741 -2.1662 48 1 3.7701 3.1850 -0.9231 49 1 5.2892 2.7040 0.0053 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182889343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:01 Heat of formation + Delta-G solvation = -27.096092 kcal Electronic energy + Delta-G solvation = -29429.166586 eV Core-core repulsion = 25585.597112 eV Total energy + Delta-G solvation = -3843.569474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02051 -39.69101 -38.38694 -36.17042 -34.86956 -34.77514 -33.10496 -31.49805 -29.65639 -28.13696 -27.43119 -26.03470 -25.45354 -24.09838 -23.15497 -22.76445 -21.52906 -20.87295 -19.45187 -18.60664 -17.98469 -17.00238 -16.40153 -16.07081 -15.97016 -15.82312 -15.04329 -14.87867 -14.49581 -14.33557 -14.06166 -13.83721 -13.62884 -13.30102 -13.10385 -13.03154 -12.92062 -12.58792 -12.54603 -12.17635 -12.02271 -11.94372 -11.47903 -11.38379 -11.26676 -11.25128 -10.99944 -10.87852 -10.78990 -10.41483 -10.32648 -10.30890 -10.20738 -9.89720 -9.74017 -9.60772 -9.43969 -8.87013 -8.62259 -6.91497 -5.75230 -3.04169 2.13778 2.44493 2.77420 2.84972 3.44746 3.49227 3.50301 3.51140 4.23438 4.33093 4.47544 4.53090 4.58796 4.64743 4.81236 4.93708 4.95076 5.20527 5.24857 5.32841 5.36766 5.43363 5.47066 5.51184 5.52798 5.58804 5.59105 5.65863 5.77598 5.84688 5.93232 6.02934 6.04622 6.05912 6.10153 6.15568 6.24108 6.25499 6.43743 6.58566 6.67412 6.76901 6.85457 7.11213 7.56215 7.70328 7.86026 8.08314 8.43232 9.54592 10.11699 10.46318 11.47343 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.003319 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.925011 B = 8434.156749 C = 8855.667094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.727 5.727 3 C 0.563 3.437 4 O -0.528 6.528 5 C -0.195 4.195 6 C 0.572 3.428 7 O -0.530 6.530 8 N -0.609 5.609 9 C 0.099 3.901 10 C -0.097 4.097 11 H 0.089 0.911 12 C -0.139 4.139 13 C -0.074 4.074 14 C -0.130 4.130 15 C 0.168 3.832 16 N -0.730 5.730 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.120 3.880 26 C -0.128 4.128 27 C -0.129 4.129 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.407 0.593 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.021 0.979 41 H 0.023 0.977 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 7.679 -18.849 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.378 5.378 3 C 0.347 3.653 4 O -0.404 6.404 5 C -0.202 4.202 6 C 0.358 3.642 7 O -0.407 6.407 8 N -0.341 5.341 9 C -0.024 4.024 10 C -0.116 4.116 11 H 0.107 0.893 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.187 4.187 15 C 0.040 3.960 16 N -0.375 5.375 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.001 4.001 26 C -0.165 4.165 27 C -0.166 4.166 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.241 0.759 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.133 0.867 47 H 0.125 0.875 48 H 0.133 0.867 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.292 7.870 -18.874 22.893 hybrid contribution 0.663 -0.665 0.965 1.346 sum -9.629 7.205 -17.909 21.572 Atomic orbital electron populations 1.21590 0.78989 1.02586 1.02445 1.45740 1.07976 1.08817 1.75223 1.19004 0.86846 0.83841 0.75580 1.90710 1.69277 1.31245 1.49201 1.21446 0.92797 1.08749 0.97166 1.18549 0.80020 0.83985 0.81644 1.90750 1.41566 1.23494 1.84872 1.48917 1.57867 1.21508 1.05854 1.22625 0.96634 0.85388 0.97723 1.22123 0.95099 0.98673 0.95745 0.89321 1.21880 0.95107 1.01107 1.01515 1.21708 0.94844 0.95133 0.95853 1.21852 0.98677 0.97851 1.00357 1.20708 0.94246 0.91421 0.89579 1.42380 1.63772 1.11919 1.19451 1.19162 1.26475 0.97846 0.93751 0.91285 1.24722 1.01381 0.96062 0.98621 1.69645 1.47296 1.03015 1.38104 0.86285 0.79172 0.76607 0.84201 1.21329 1.21720 1.21305 1.22534 0.97243 1.00780 0.79566 1.23093 1.01627 0.99858 0.91944 1.23098 1.01228 0.91234 1.01071 0.92048 0.90394 0.91927 0.75894 0.90808 0.89675 0.92722 0.92021 0.93049 0.91573 0.92442 0.93542 0.96167 0.95922 0.78098 0.93450 0.89648 0.90143 0.86695 0.87512 0.86723 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.67 10.71 59.85 0.64 1.31 16 2 N -0.73 -7.00 5.71 -67.08 -0.38 -7.38 16 3 C 0.56 6.56 6.34 -10.99 -0.07 6.49 16 4 O -0.53 -7.30 15.84 5.55 0.09 -7.21 16 5 C -0.20 -2.23 1.44 -156.81 -0.23 -2.45 16 6 C 0.57 8.32 7.13 -10.98 -0.08 8.24 16 7 O -0.53 -9.45 17.07 5.56 0.09 -9.36 16 8 N -0.61 -8.75 3.32 -169.31 -0.56 -9.31 16 9 C 0.10 1.23 6.47 -2.41 -0.02 1.21 16 10 C -0.10 -1.23 3.31 -89.22 -0.30 -1.53 16 11 H 0.09 1.07 7.72 -51.93 -0.40 0.66 16 12 C -0.14 -1.63 7.93 37.15 0.29 -1.33 16 13 C -0.07 -1.16 0.73 -153.11 -0.11 -1.28 16 14 C -0.13 -2.06 7.08 37.16 0.26 -1.80 16 15 C 0.17 3.25 4.86 -4.04 -0.02 3.23 16 16 N -0.73 -17.94 5.12 -59.91 -0.31 -18.25 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.12 2.02 5.53 -2.41 -0.01 2.00 16 26 C -0.13 -1.16 9.77 -26.69 -0.26 -1.42 16 27 C -0.13 -1.20 9.75 -26.69 -0.26 -1.46 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 3.60 8.83 -40.82 -0.36 3.24 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.05 5.72 -51.93 -0.30 0.75 16 34 H 0.05 0.68 6.53 -51.93 -0.34 0.34 16 35 H 0.06 0.71 7.07 -51.93 -0.37 0.34 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 1.23 6.99 -51.93 -0.36 0.86 16 38 H 0.06 0.87 7.07 -51.93 -0.37 0.50 16 39 H 0.05 0.68 6.53 -51.93 -0.34 0.34 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.38 9.98 6.27 -40.82 -0.26 9.73 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 1.62 7.64 -51.93 -0.40 1.23 16 45 H 0.08 1.45 7.87 -51.93 -0.41 1.04 16 46 H 0.11 1.09 8.05 -51.93 -0.42 0.67 16 47 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.11 1.01 7.89 -51.93 -0.41 0.60 16 49 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -33.17 391.11 -7.95 -41.12 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -8.07 Total: 10.52 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.40 Total: 3.98 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.53 Total: -62.30 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.18 Total: -16.56 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.17 -7.95 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182889343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.023 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds