Wall clock time and date at job start Tue Mar 31 2020 14:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 115.55674 * 2 1 4 4 C 1.52997 * 117.49790 * 214.31515 * 2 1 3 5 5 C 1.52998 * 117.49927 * 145.69035 * 2 1 3 6 6 H 1.08992 * 117.50091 * 215.00381 * 5 2 1 7 7 C 1.50706 * 117.49830 * 0.02562 * 5 2 1 8 8 O 1.21279 * 119.99904 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00045 * 180.02562 * 7 5 2 10 10 C 1.46494 * 119.99970 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47113 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47307 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99786 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00118 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00303 * 180.02562 * 14 12 11 16 16 C 1.53048 * 109.46087 * 275.06957 * 15 14 12 17 17 C 1.53187 * 109.31055 * 178.61225 * 16 15 14 18 18 N 1.46924 * 108.77697 * 54.63648 * 17 16 15 19 19 C 1.36935 * 120.62943 * 126.36809 * 18 17 16 20 20 H 1.08004 * 120.00461 * 331.84615 * 19 18 17 21 21 C 1.38809 * 120.00130 * 151.84160 * 19 18 17 22 22 N 1.31622 * 120.00185 * 343.08019 * 21 19 18 23 23 Si 1.86799 * 120.00328 * 163.07007 * 21 19 18 24 24 H 1.48505 * 109.47229 * 90.00280 * 23 21 19 25 25 H 1.48498 * 109.47306 * 210.00618 * 23 21 19 26 26 H 1.48501 * 109.47143 * 330.00745 * 23 21 19 27 27 C 1.46924 * 118.73950 * 306.38618 * 18 17 16 28 28 C 1.53039 * 109.46210 * 155.00267 * 15 14 12 29 29 H 1.08999 * 109.47117 * 274.30505 * 1 2 3 30 30 H 1.09001 * 109.47438 * 34.31203 * 1 2 3 31 31 H 1.09002 * 109.46887 * 154.30819 * 1 2 3 32 32 H 1.09001 * 117.50066 * 0.02562 * 4 2 1 33 33 H 1.09003 * 117.49815 * 145.02495 * 4 2 1 34 34 H 0.97000 * 119.99883 * 359.97438 * 9 7 5 35 35 H 1.08992 * 109.47210 * 299.99708 * 10 9 7 36 36 H 1.09003 * 109.46830 * 59.99993 * 10 9 7 37 37 H 1.09008 * 109.47490 * 300.00584 * 11 10 9 38 38 H 1.09011 * 109.47093 * 60.00065 * 11 10 9 39 39 H 0.97000 * 120.00038 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.45935 * 35.02523 * 15 14 12 41 41 H 1.08994 * 109.49772 * 298.56407 * 16 15 14 42 42 H 1.08996 * 109.49258 * 58.66189 * 16 15 14 43 43 H 1.09004 * 109.58965 * 294.84628 * 17 16 15 44 44 H 1.09001 * 109.70045 * 174.49495 * 17 16 15 45 45 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58781 * 293.82359 * 27 18 17 47 47 H 1.08993 * 109.58620 * 173.39493 * 27 18 17 48 48 H 1.09001 * 109.49629 * 301.33701 * 28 15 14 49 49 H 1.08996 * 109.50021 * 61.40213 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7650 6 1 3.1713 -0.8751 1.2686 7 6 1.3720 -2.1410 1.4603 8 8 0.1638 -2.0536 1.4007 9 7 1.9415 -3.1497 2.1492 10 6 1.1012 -4.1409 2.8256 11 6 1.9903 -5.1694 3.5275 12 6 1.1259 -6.1887 4.2238 13 8 -0.0823 -6.1014 4.1641 14 7 1.6954 -7.1974 4.9128 15 6 0.8551 -8.1886 5.5892 16 6 0.4576 -7.6626 6.9704 17 6 -0.4490 -8.6864 7.6607 18 7 0.2367 -9.9856 7.6841 19 6 0.4033 -10.6654 8.8611 20 1 0.4668 -10.1238 9.7933 21 6 0.4905 -12.0507 8.8561 22 7 0.0889 -12.7317 7.8037 23 14 1.1779 -12.9488 10.3428 24 1 0.0731 -13.2698 11.2818 25 1 1.8340 -14.2060 9.9020 26 1 2.1732 -12.0845 11.0266 27 6 0.7408 -10.5413 6.4209 28 6 1.6342 -9.4966 5.7445 29 1 -0.3633 0.0771 1.0248 30 1 -0.3634 0.8488 -0.5793 31 1 -0.3633 -0.9261 -0.4455 32 1 1.6112 -1.8581 -1.2688 33 1 3.1716 -0.8751 -1.2683 34 1 2.9079 -3.2194 2.1972 35 1 0.4717 -3.6416 3.5620 36 1 0.4722 -4.6452 2.0920 37 1 2.6197 -5.6687 2.7907 38 1 2.6196 -4.6654 4.2610 39 1 2.6617 -7.2670 4.9608 40 1 -0.0423 -8.3684 4.9973 41 1 1.3532 -7.5060 7.5717 42 1 -0.0768 -6.7191 6.8604 43 1 -1.3846 -8.7769 7.1086 44 1 -0.6567 -8.3643 8.6811 45 1 0.1502 -13.6997 7.8000 46 1 -0.0977 -10.7830 5.7677 47 1 1.3204 -11.4418 6.6233 48 1 1.9371 -9.8585 4.7619 49 1 2.5190 -9.3227 6.3568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227662005.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:05 Heat of formation + Delta-G solvation = -38.852233 kcal Electronic energy + Delta-G solvation = -26834.166768 eV Core-core repulsion = 22990.087510 eV Total energy + Delta-G solvation = -3844.079258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47339 -39.78320 -37.54873 -37.06079 -35.28491 -34.44500 -32.30794 -31.30993 -30.11695 -29.37749 -28.73702 -25.80571 -24.75089 -23.13292 -22.27753 -21.76946 -21.42188 -20.56703 -20.00713 -19.21834 -17.62220 -17.10020 -16.73930 -16.22832 -15.88349 -15.64697 -15.48769 -14.87644 -14.71509 -14.15079 -13.87029 -13.75961 -13.57831 -13.40184 -13.31028 -12.95287 -12.89088 -12.64153 -12.50906 -12.42841 -12.12888 -11.85099 -11.74090 -11.48304 -11.14707 -10.89257 -10.72619 -10.66120 -10.52557 -10.47906 -10.30764 -10.06606 -9.97164 -9.84060 -9.71706 -9.48915 -9.35041 -8.75933 -8.47772 -6.70072 -5.81458 -3.23643 2.21351 2.67494 2.68884 3.35071 3.37454 3.42835 3.44707 3.45648 4.19556 4.32423 4.42050 4.47826 4.49609 4.72033 4.77759 4.81007 4.99484 5.14632 5.25611 5.31615 5.38763 5.41047 5.48063 5.52531 5.55875 5.62747 5.68256 5.77564 5.80534 5.84686 6.04770 6.08523 6.24116 6.25722 6.30430 6.49871 6.53217 6.56208 6.77811 6.87561 6.97513 7.17423 7.29104 7.55763 7.66611 7.77877 7.96279 8.32154 8.42758 9.18861 9.82075 10.39167 11.27531 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.047192 B = 0.001750 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.173220 B =15997.447198 C =16143.086327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.195 4.195 6 H 0.122 0.878 7 C 0.540 3.460 8 O -0.529 6.529 9 N -0.730 5.730 10 C 0.135 3.865 11 C -0.154 4.154 12 C 0.513 3.487 13 O -0.538 6.538 14 N -0.723 5.723 15 C 0.150 3.850 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.399 0.601 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.396 0.604 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.021 0.979 47 H 0.092 0.908 48 H 0.054 0.946 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 21.645 -15.280 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.137 4.137 3 H 0.129 0.871 4 C -0.189 4.189 5 C -0.217 4.217 6 H 0.140 0.860 7 C 0.327 3.673 8 O -0.405 6.405 9 N -0.382 5.382 10 C 0.011 3.989 11 C -0.195 4.195 12 C 0.297 3.703 13 O -0.415 6.415 14 N -0.373 5.373 15 C 0.047 3.953 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.047 3.953 28 C -0.186 4.186 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.233 0.767 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.229 0.771 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.888 21.550 -15.357 27.914 hybrid contribution 1.578 -0.696 0.905 1.948 sum 10.466 20.854 -14.451 27.446 Atomic orbital electron populations 1.21380 0.91352 1.01547 1.02749 1.22383 0.96729 0.93500 1.01075 0.87121 1.23097 1.03131 1.02033 0.90661 1.22293 1.02124 1.01362 0.95876 0.85958 1.19669 0.88204 0.81130 0.78336 1.90745 1.14529 1.74466 1.60759 1.45973 1.10361 1.28064 1.53800 1.21035 0.92417 0.88530 0.96887 1.21824 0.99461 0.96975 1.01205 1.20246 0.88837 0.82128 0.79040 1.90752 1.14617 1.74581 1.61515 1.46344 1.10384 1.27935 1.52647 1.21066 0.94019 0.87228 0.93022 1.22368 1.00733 0.99121 0.95668 1.20877 0.92840 0.86283 0.98015 1.44087 1.64069 1.18746 1.04627 1.19178 1.44274 0.88541 0.86220 0.91672 1.25057 1.00464 0.96724 0.97425 1.70025 1.48675 1.06181 1.29877 0.86303 0.78968 0.79148 0.82383 1.21364 1.21567 1.20525 1.20746 0.94626 0.94090 0.85803 1.22534 1.00138 0.95760 1.00172 0.91285 0.93206 0.91693 0.88157 0.87816 0.76698 0.90424 0.90475 0.88376 0.88374 0.77074 0.89994 0.92362 0.92736 0.96167 0.92540 0.93593 0.96087 0.89015 0.92769 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 8.43 37.16 0.31 -0.68 16 2 C -0.12 -0.81 6.41 -90.62 -0.58 -1.39 16 3 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.15 -0.88 9.88 -26.73 -0.26 -1.15 16 5 C -0.20 -1.30 6.19 -91.77 -0.57 -1.87 16 6 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 7 C 0.54 5.32 7.59 -10.98 -0.08 5.24 16 8 O -0.53 -7.33 13.10 5.56 0.07 -7.26 16 9 N -0.73 -5.67 5.56 -60.30 -0.33 -6.01 16 10 C 0.13 1.37 4.96 -4.04 -0.02 1.35 16 11 C -0.15 -1.24 5.81 -27.88 -0.16 -1.40 16 12 C 0.51 6.71 7.79 -10.99 -0.09 6.62 16 13 O -0.54 -9.56 15.65 5.56 0.09 -9.48 16 14 N -0.72 -9.24 5.08 -53.77 -0.27 -9.51 16 15 C 0.15 2.53 2.42 -67.89 -0.16 2.36 16 16 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 17 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 18 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 19 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 20 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -25.91 11.20 55.49 0.62 -25.29 16 23 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 28 C -0.15 -2.59 5.55 -26.61 -0.15 -2.74 16 29 H 0.07 0.73 7.26 -51.93 -0.38 0.35 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.67 7.01 -51.93 -0.36 0.31 16 32 H 0.10 0.68 8.05 -51.93 -0.42 0.27 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 1.74 8.47 -40.82 -0.35 1.40 16 35 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.08 0.96 8.10 -51.93 -0.42 0.53 16 37 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 40 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -33.94 392.54 -10.08 -44.02 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.44 Total: 2.65 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.19 Total: 3.82 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.50 Total: -56.02 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.16 Total: -16.74 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.94 -10.08 -44.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227662005.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.167 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds