Wall clock time and date at job start Tue Mar 31 2020 14:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.63835 * 2 1 4 4 C 1.55156 * 110.71763 * 236.66725 * 2 1 3 5 5 C 1.55131 * 101.48665 * 205.96546 * 4 2 1 6 6 N 1.47433 * 104.72174 * 37.29553 * 5 4 2 7 7 C 1.34770 * 125.64849 * 155.81219 * 6 5 4 8 8 O 1.21348 * 119.99647 * 179.69299 * 7 6 5 9 9 C 1.49444 * 120.00186 * 359.42744 * 7 6 5 10 10 O 1.21348 * 120.00114 * 0.26556 * 9 7 6 11 11 N 1.34780 * 120.00210 * 180.27437 * 9 7 6 12 12 C 1.46500 * 120.00057 * 179.97438 * 11 9 7 13 13 C 1.53042 * 109.45841 * 275.06137 * 12 11 9 14 14 C 1.53187 * 109.31317 * 178.61297 * 13 12 11 15 15 N 1.46930 * 108.77510 * 54.63542 * 14 13 12 16 16 C 1.36935 * 120.62894 * 126.36498 * 15 14 13 17 17 H 1.08002 * 120.00212 * 207.70167 * 16 15 14 18 18 C 1.38819 * 120.00118 * 27.70709 * 16 15 14 19 19 N 1.31618 * 119.99491 * 17.34788 * 18 16 15 20 20 Si 1.86793 * 120.00149 * 197.34869 * 18 16 15 21 21 H 1.48507 * 109.47308 * 90.00029 * 20 18 16 22 22 H 1.48501 * 109.47324 * 209.99706 * 20 18 16 23 23 H 1.48500 * 109.47251 * 330.00034 * 20 18 16 24 24 C 1.46924 * 118.74161 * 306.39467 * 15 14 13 25 25 C 1.53039 * 109.45965 * 154.99632 * 12 11 9 26 26 C 1.47026 * 108.69758 * 335.55605 * 6 5 4 27 27 H 1.09000 * 109.87922 * 241.86602 * 26 6 5 28 28 C 1.52999 * 109.88129 * 120.70361 * 26 6 5 29 29 H 1.09003 * 109.47333 * 296.85227 * 1 2 3 30 30 H 1.09001 * 109.47617 * 56.85459 * 1 2 3 31 31 H 1.09003 * 109.47181 * 176.85811 * 1 2 3 32 32 H 1.08998 * 111.00970 * 324.20437 * 4 2 1 33 33 H 1.09001 * 111.00353 * 88.02668 * 4 2 1 34 34 H 1.08998 * 110.50196 * 278.46124 * 5 4 2 35 35 H 1.08999 * 110.34489 * 156.05890 * 5 4 2 36 36 H 0.96998 * 119.99569 * 359.97438 * 11 9 7 37 37 H 1.08996 * 109.46156 * 35.02461 * 12 11 9 38 38 H 1.08997 * 109.50189 * 298.57105 * 13 12 11 39 39 H 1.09004 * 109.49536 * 58.66930 * 13 12 11 40 40 H 1.09008 * 109.58966 * 294.85626 * 14 13 12 41 41 H 1.08994 * 109.59244 * 174.42733 * 14 13 12 42 42 H 0.97005 * 119.99856 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.58548 * 293.81855 * 24 15 14 44 44 H 1.09001 * 109.70488 * 173.45810 * 24 15 14 45 45 H 1.09002 * 109.49794 * 301.33981 * 25 12 11 46 46 H 1.09006 * 109.49866 * 61.39913 * 25 12 11 47 47 H 1.09004 * 109.47609 * 61.45025 * 28 26 6 48 48 H 1.09003 * 109.47123 * 181.44849 * 28 26 6 49 49 H 1.08997 * 109.47473 * 301.44836 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0200 0.0000 4 6 2.0788 -0.7974 -1.2125 5 6 3.4665 -1.2466 -0.6842 6 7 3.2446 -1.5495 0.7415 7 6 3.9923 -2.3811 1.4935 8 8 3.7194 -2.5517 2.6635 9 6 5.1541 -3.0977 0.8851 10 8 5.4270 -2.9271 -0.2849 11 7 5.8985 -3.9337 1.6358 12 6 7.0370 -4.6366 1.0391 13 6 6.5464 -5.9170 0.3595 14 6 7.7341 -6.6315 -0.2928 15 7 8.7724 -6.8478 0.7240 16 6 9.2834 -8.0990 0.9442 17 1 9.6745 -8.3592 1.9167 18 6 9.2989 -9.0330 -0.0827 19 7 9.1521 -8.6413 -1.3307 20 14 9.5280 -10.8455 0.3066 21 1 8.2015 -11.4763 0.5257 22 1 10.2120 -11.5133 -0.8298 23 1 10.3525 -10.9879 1.5335 24 6 9.2515 -5.6963 1.5006 25 6 8.0467 -4.9922 2.1328 26 6 2.0760 -0.7892 1.2085 27 1 2.3741 -0.0991 1.9978 28 6 1.0050 -1.7493 1.7299 29 1 -0.3634 0.4642 0.9169 30 1 -0.3634 0.5619 -0.8604 31 1 -0.3634 -1.0261 -0.0563 32 1 1.4451 -1.6560 -1.4348 33 1 2.1843 -0.1554 -2.0870 34 1 4.1946 -0.4428 -0.7922 35 1 3.8031 -2.1381 -1.2134 36 1 5.6805 -4.0698 2.5710 37 1 7.5141 -3.9932 0.2998 38 1 6.0913 -6.5719 1.1026 39 1 5.8099 -5.6647 -0.4035 40 1 8.1341 -6.0150 -1.0979 41 1 7.4083 -7.5918 -0.6924 42 1 9.1633 -9.2939 -2.0483 43 1 9.7751 -5.0036 0.8418 44 1 9.9280 -6.0373 2.2843 45 1 8.3781 -4.0817 2.6321 46 1 7.5773 -5.6554 2.8596 47 1 1.4018 -2.3124 2.5747 48 1 0.1320 -1.1806 2.0503 49 1 0.7179 -2.4391 0.9363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346168637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:55 Heat of formation + Delta-G solvation = -47.537953 kcal Electronic energy + Delta-G solvation = -28332.782305 eV Core-core repulsion = 24488.326406 eV Total energy + Delta-G solvation = -3844.455899 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.98367 -39.41370 -37.93844 -37.31853 -34.64328 -33.37795 -32.13592 -31.45945 -30.13543 -29.56295 -28.27031 -25.87823 -25.24048 -24.12546 -22.74086 -22.28100 -21.47995 -20.20252 -19.54775 -19.08642 -17.88854 -16.90537 -16.77874 -16.40096 -15.72913 -15.61779 -14.92698 -14.61392 -14.36378 -14.13061 -13.92452 -13.66794 -13.54009 -13.44630 -13.14341 -13.03173 -12.84339 -12.56121 -12.48778 -12.42149 -12.19712 -11.78277 -11.67050 -11.51070 -11.13193 -11.09290 -10.96536 -10.86869 -10.78855 -10.75038 -10.42413 -10.25121 -10.10388 -9.79360 -9.72511 -9.32298 -8.98178 -8.80962 -8.45159 -6.71352 -5.79925 -3.22565 1.48355 2.26624 3.27144 3.37848 3.44969 3.45993 3.49429 4.08242 4.24689 4.42509 4.48791 4.50161 4.82866 4.98160 5.00718 5.05946 5.24019 5.26349 5.32722 5.36343 5.37646 5.42562 5.49163 5.56955 5.60623 5.67682 5.70676 5.77435 5.80752 5.90074 5.96106 6.03209 6.14529 6.20282 6.25309 6.37985 6.53636 6.62368 6.72040 6.77761 6.90330 7.06390 7.32881 7.37488 7.65103 7.76270 7.78925 8.12177 8.43429 9.19467 9.82653 10.38895 11.28757 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026340 B = 0.002492 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.752516 B =11231.453296 C =11478.654813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.131 4.131 5 C 0.095 3.905 6 N -0.589 5.589 7 C 0.522 3.478 8 O -0.524 6.524 9 C 0.505 3.495 10 O -0.518 6.518 11 N -0.691 5.691 12 C 0.149 3.851 13 C -0.147 4.147 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.254 4.254 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C -0.140 4.140 26 C 0.136 3.864 27 H 0.077 0.923 28 C -0.165 4.165 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.091 0.909 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 18.280 2.937 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.170 4.170 5 C -0.027 4.027 6 N -0.324 5.324 7 C 0.305 3.695 8 O -0.400 6.400 9 C 0.285 3.715 10 O -0.395 6.395 11 N -0.342 5.342 12 C 0.046 3.954 13 C -0.188 4.188 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.022 3.978 25 C -0.180 4.180 26 C 0.033 3.967 27 H 0.095 0.905 28 C -0.223 4.223 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.242 0.758 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.086 18.127 2.626 24.377 hybrid contribution -0.020 -0.933 0.555 1.085 sum -16.106 17.194 3.181 23.773 Atomic orbital electron populations 1.21859 0.93683 1.02537 1.01939 1.22273 0.96578 0.99133 0.94098 0.89622 1.22988 0.96023 1.00369 0.97571 1.22737 0.96900 1.02977 0.80085 1.48369 1.28734 1.43032 1.12275 1.20060 0.83643 0.79894 0.85912 1.90728 1.70318 1.63100 1.15851 1.19922 0.83811 0.80950 0.86812 1.90714 1.69272 1.63841 1.15647 1.46192 1.30298 1.43108 1.14619 1.21227 0.84674 0.93527 0.95932 1.22594 1.00779 0.95531 0.99851 1.20769 0.85455 0.99548 0.89459 1.44113 1.41768 1.03448 1.42209 1.19193 1.36482 0.87921 0.94774 0.91549 1.25056 1.00760 0.98928 0.94911 1.70036 1.53757 1.32776 0.98006 0.86279 0.77766 0.85328 0.77321 1.21447 1.21762 1.20418 1.20836 0.92474 0.89821 0.94671 1.22368 0.98050 1.00084 0.97500 1.21688 0.85379 0.92943 0.96671 0.90458 1.22226 0.98192 0.99754 1.02111 0.92217 0.92252 0.91806 0.90364 0.89615 0.90886 0.87720 0.75779 0.89590 0.92411 0.92789 0.96031 0.89088 0.93563 0.96099 0.92159 0.92395 0.91573 0.91148 0.91201 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 7.99 37.16 0.30 -0.45 16 2 C -0.10 -0.67 3.47 -88.79 -0.31 -0.98 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -0.94 6.54 -24.46 -0.16 -1.10 16 5 C 0.10 0.96 6.09 -2.40 -0.01 0.95 16 6 N -0.59 -6.90 3.08 -163.38 -0.50 -7.40 16 7 C 0.52 7.44 7.70 -11.59 -0.09 7.35 16 8 O -0.52 -8.20 15.37 5.50 0.08 -8.11 16 9 C 0.51 7.85 7.82 -11.59 -0.09 7.75 16 10 O -0.52 -8.89 13.43 5.50 0.07 -8.82 16 11 N -0.69 -10.51 5.07 -54.20 -0.27 -10.78 16 12 C 0.15 2.58 2.42 -67.89 -0.16 2.42 16 13 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 14 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 15 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16 16 C -0.25 -6.90 9.59 -15.06 -0.14 -7.04 16 17 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 18 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 19 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 20 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.15 3.04 6.51 -3.71 -0.02 3.01 16 25 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 26 C 0.14 1.26 3.43 -66.95 -0.23 1.03 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 C -0.17 -1.49 7.93 37.16 0.29 -1.20 16 29 H 0.06 0.28 7.59 -51.93 -0.39 -0.11 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.36 6.61 -51.93 -0.34 0.01 16 32 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.26 6.13 -51.93 -0.32 0.95 16 36 H 0.41 5.62 8.07 -40.82 -0.33 5.29 16 37 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 41 H 0.09 2.45 6.03 -51.93 -0.31 2.13 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.19 7.94 -51.93 -0.41 0.77 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.07 0.81 6.74 -51.93 -0.35 0.46 16 48 H 0.07 0.48 6.70 -51.93 -0.35 0.13 16 49 H 0.06 0.54 7.53 -51.93 -0.39 0.15 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -30.92 377.66 -9.10 -40.02 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.21 Total: 3.19 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -1.04 Total: 10.33 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.67 Total: -58.90 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.16 Total: -16.93 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.92 -9.10 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346168637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.521 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds