Wall clock time and date at job start Tue Mar 31 2020 14:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.88438 * 2 1 4 4 C 1.55158 * 111.00322 * 236.07500 * 2 1 3 5 5 C 1.54328 * 102.93871 * 206.41840 * 4 2 1 6 6 H 1.09001 * 109.87541 * 141.60909 * 5 4 2 7 7 C 1.52993 * 110.01217 * 262.70073 * 5 4 2 8 8 N 1.47017 * 107.27241 * 22.19757 * 5 4 2 9 9 C 1.34781 * 125.65024 * 181.09298 * 8 5 4 10 10 O 1.21346 * 119.99899 * 359.97438 * 9 8 5 11 11 C 1.49445 * 120.00106 * 179.97438 * 9 8 5 12 12 O 1.21352 * 120.00481 * 6.78530 * 11 9 8 13 13 N 1.34778 * 119.99985 * 186.78961 * 11 9 8 14 14 C 1.47078 * 120.88227 * 7.87917 * 13 11 9 15 15 C 1.53690 * 108.27928 * 128.75688 * 14 13 11 16 16 N 1.46898 * 109.25684 * 54.08278 * 15 14 13 17 17 C 1.46900 * 111.00195 * 172.61173 * 16 15 14 18 18 C 1.50706 * 109.46846 * 294.30056 * 17 16 15 19 19 H 1.08003 * 120.00010 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99876 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99845 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99814 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47444 * 59.99766 * 22 20 18 24 24 H 1.48493 * 109.47192 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46967 * 300.00079 * 22 20 18 26 26 C 1.46902 * 111.26826 * 296.76032 * 16 15 14 27 27 C 1.47080 * 120.87904 * 188.15933 * 13 11 9 28 28 C 1.47422 * 108.70414 * 1.05191 * 8 5 4 29 29 H 1.09005 * 109.47096 * 297.57243 * 1 2 3 30 30 H 1.09001 * 109.46998 * 177.58127 * 1 2 3 31 31 H 1.08994 * 109.47450 * 57.57652 * 1 2 3 32 32 H 1.08997 * 110.72114 * 324.78189 * 4 2 1 33 33 H 1.09001 * 110.71752 * 88.06381 * 4 2 1 34 34 H 1.09002 * 109.47030 * 179.33825 * 7 5 4 35 35 H 1.08998 * 109.47491 * 299.34485 * 7 5 4 36 36 H 1.09000 * 109.47113 * 59.34535 * 7 5 4 37 37 H 1.09000 * 109.63000 * 248.53029 * 14 13 11 38 38 H 1.09003 * 109.62693 * 9.10155 * 14 13 11 39 39 H 1.09007 * 109.64567 * 294.08215 * 15 14 13 40 40 H 1.08996 * 109.44245 * 173.96414 * 15 14 13 41 41 H 1.08994 * 109.47354 * 54.29684 * 17 16 15 42 42 H 1.08997 * 109.47434 * 174.30584 * 17 16 15 43 43 H 0.97003 * 119.99912 * 180.02562 * 21 20 18 44 44 H 1.09009 * 109.49048 * 303.14322 * 26 16 15 45 45 H 1.09003 * 109.49140 * 183.06785 * 26 16 15 46 46 H 1.08993 * 109.63015 * 350.89614 * 27 13 11 47 47 H 1.09004 * 109.62767 * 111.27985 * 27 13 11 48 48 H 1.09002 * 110.37235 * 217.03603 * 28 8 5 49 49 H 1.09004 * 110.36514 * 94.71376 * 28 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8084 -1.2019 5 6 3.4675 -1.2743 -0.6955 6 1 3.6650 -2.2897 -1.0391 7 6 4.5580 -0.3308 -1.2066 8 7 3.4272 -1.2427 0.7738 9 6 4.4482 -1.5595 1.5946 10 8 5.5141 -1.9076 1.1307 11 6 4.2676 -1.4821 3.0761 12 8 3.1707 -1.2545 3.5427 13 7 5.3230 -1.6651 3.8941 14 6 6.6871 -1.7706 3.3544 15 6 7.5847 -0.7830 4.1166 16 7 7.4669 -1.0351 5.5590 17 6 8.4380 -0.2328 6.3148 18 6 9.8351 -0.6860 5.9771 19 1 9.9864 -1.4893 5.2713 20 6 10.9201 -0.0743 6.5684 21 7 10.7358 0.9043 7.4274 22 14 12.6517 -0.6355 6.1492 23 1 12.8903 -0.4606 4.6940 24 1 13.6334 0.1754 6.9132 25 1 12.8081 -2.0681 6.5077 26 6 6.0984 -0.7890 6.0329 27 6 5.1404 -1.7707 5.3497 28 6 2.0854 -0.8061 1.2006 29 1 -0.3633 0.4757 0.9110 30 1 -0.3633 -1.0268 -0.0434 31 1 -0.3634 0.5510 -0.8674 32 1 1.4468 -1.6638 -1.4202 33 1 2.1922 -0.1707 -2.0795 34 1 5.5279 -0.6610 -0.8344 35 1 4.5648 -0.3399 -2.2966 36 1 4.3584 0.6807 -0.8530 37 1 7.0572 -2.7867 3.4906 38 1 6.6816 -1.5190 2.2938 39 1 7.2728 0.2386 3.8993 40 1 8.6206 -0.9208 3.8067 41 1 8.3236 0.8187 6.0517 42 1 8.2627 -0.3613 7.3828 43 1 11.4991 1.3349 7.8431 44 1 5.8072 0.2327 5.7889 45 1 6.0563 -0.9315 7.1127 46 1 4.1121 -1.5192 5.6090 47 1 5.3614 -2.7878 5.6736 48 1 2.1560 -0.1710 2.0837 49 1 1.4520 -1.6698 1.4032 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351845512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:02 Heat of formation + Delta-G solvation = -42.753522 kcal Electronic energy + Delta-G solvation = -28574.163703 eV Core-core repulsion = 24729.915272 eV Total energy + Delta-G solvation = -3844.248431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10898 -39.47523 -37.91818 -37.54690 -34.48052 -33.24371 -32.39587 -32.01870 -30.76307 -28.42792 -27.38698 -26.34371 -25.79403 -24.40251 -23.26459 -22.16677 -21.35587 -20.70611 -19.85347 -18.93157 -17.19886 -17.00755 -16.49385 -16.34489 -15.93061 -15.58126 -14.77200 -14.67376 -14.37851 -14.25405 -14.05461 -13.98419 -13.78640 -13.61452 -13.53984 -13.06987 -12.89349 -12.79933 -12.57700 -12.36428 -12.14926 -11.97269 -11.92300 -11.44786 -11.29024 -11.15358 -11.04912 -11.01854 -10.84737 -10.77182 -10.70235 -10.52294 -10.48125 -9.87851 -9.29103 -9.09426 -8.94994 -8.55085 -8.43556 -7.31103 -6.04537 -4.06366 1.42701 2.19570 3.18435 3.33270 3.34393 3.37262 3.40385 4.02774 4.13012 4.35678 4.40983 4.45793 4.73726 4.86911 4.97909 5.00655 5.09277 5.24777 5.30682 5.32026 5.33732 5.40893 5.43527 5.45774 5.53988 5.60202 5.64066 5.67519 5.71292 5.78820 5.85715 5.90638 5.93054 5.95056 6.10090 6.18662 6.26424 6.46499 6.54129 6.63194 7.03810 7.23382 7.29201 7.34993 7.64837 7.76063 8.00893 8.03153 8.13926 8.49479 9.00715 9.58064 11.06293 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.002747 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.026685 B =10188.922690 C =10892.266885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.132 3.868 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.589 5.589 9 C 0.523 3.477 10 O -0.508 6.508 11 C 0.506 3.494 12 O -0.532 6.532 13 N -0.572 5.572 14 C 0.077 3.923 15 C 0.051 3.949 16 N -0.537 5.537 17 C 0.194 3.806 18 C -0.510 4.510 19 H 0.064 0.936 20 C 0.056 3.944 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.042 3.958 27 C 0.115 3.885 28 C 0.104 3.896 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.022 0.978 40 H 0.098 0.902 41 H -0.009 1.009 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.097 0.903 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 -2.814 -16.647 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.029 3.971 6 H 0.097 0.903 7 C -0.223 4.223 8 N -0.323 5.323 9 C 0.308 3.692 10 O -0.385 6.385 11 C 0.288 3.712 12 O -0.410 6.410 13 N -0.304 5.304 14 C -0.044 4.044 15 C -0.078 4.078 16 N -0.262 5.262 17 C 0.069 3.931 18 C -0.548 4.548 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.087 4.087 27 C -0.007 4.007 28 C -0.018 4.018 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.147 0.853 39 H 0.041 0.959 40 H 0.116 0.884 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.867 -3.274 -16.368 25.948 hybrid contribution 0.910 0.632 -0.108 1.113 sum -18.957 -2.641 -16.476 25.255 Atomic orbital electron populations 1.21683 0.93503 1.02281 1.02300 1.22441 0.96435 0.99562 0.94437 0.89659 1.22824 0.94711 1.00416 0.98294 1.21682 0.96168 1.00277 0.78931 0.90267 1.22169 0.99790 0.99300 1.01075 1.48379 1.12635 1.64794 1.06541 1.19973 0.83217 0.78482 0.87565 1.90546 1.24544 1.46485 1.76901 1.19872 0.84937 0.79147 0.87241 1.90681 1.24941 1.48493 1.76932 1.48142 1.07559 1.67369 1.07379 1.23120 0.78779 1.01220 1.01280 1.22464 1.00671 0.95501 0.89178 1.62118 1.02795 1.58272 1.03047 1.19719 0.89790 0.90276 0.93304 1.21113 0.90009 1.18197 1.25499 0.91806 1.24992 0.99433 0.95014 0.95132 1.69948 1.31038 1.23904 1.28909 0.86546 0.83669 0.78711 0.78410 1.20221 1.21383 1.20122 1.22380 0.90355 0.96206 0.99779 1.21932 1.00385 1.00781 0.77617 1.22688 0.81936 0.99126 0.98042 0.92012 0.92267 0.92122 0.90312 0.89680 0.90722 0.91471 0.92367 0.90596 0.85310 0.95933 0.88359 0.99137 0.95044 0.92833 0.95480 0.89843 0.89188 0.90299 0.88458 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.29 37.16 0.35 -0.40 16 2 C -0.11 -0.76 3.64 -88.47 -0.32 -1.08 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.77 5.97 -24.89 -0.15 -0.92 16 5 C 0.13 1.19 3.49 -66.96 -0.23 0.96 16 6 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 7 C -0.17 -1.51 9.07 37.15 0.34 -1.17 16 8 N -0.59 -6.80 3.08 -163.53 -0.50 -7.30 16 9 C 0.52 7.52 7.55 -11.59 -0.09 7.44 16 10 O -0.51 -7.98 12.08 5.50 0.07 -7.91 16 11 C 0.51 7.91 7.69 -11.59 -0.09 7.82 16 12 O -0.53 -8.61 13.36 5.49 0.07 -8.54 16 13 N -0.57 -9.30 3.00 -172.70 -0.52 -9.82 16 14 C 0.08 1.30 6.14 -3.37 -0.02 1.28 16 15 C 0.05 1.00 5.47 -3.47 -0.02 0.98 16 16 N -0.54 -11.53 4.62 -235.47 -1.09 -12.61 16 17 C 0.19 5.02 4.72 -4.97 -0.02 5.00 16 18 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 19 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 21 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 27 C 0.11 1.80 6.61 -3.60 -0.02 1.77 16 28 C 0.10 1.02 5.43 -2.53 -0.01 1.00 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.42 8.01 -51.93 -0.42 0.01 16 33 H 0.08 0.42 7.83 -51.93 -0.41 0.01 16 34 H 0.07 0.86 6.73 -51.93 -0.35 0.51 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.13 2.13 4.44 -54.20 -0.24 1.89 16 39 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 40 H 0.10 2.06 6.67 -51.93 -0.35 1.71 16 41 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 46 H 0.09 1.32 7.05 -51.93 -0.37 0.96 16 47 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.10 1.12 6.35 -51.93 -0.33 0.79 16 49 H 0.07 0.70 8.04 -51.93 -0.42 0.29 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -31.17 379.03 -9.53 -40.70 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.28 Total: -1.32 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -0.71 Total: 10.44 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -1.37 Total: -55.63 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.14 Total: -16.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.17 -9.53 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351845512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.051 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds