Wall clock time and date at job start Tue Mar 31 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99824 * 2 1 4 4 H 1.08993 * 109.57490 * 330.16020 * 3 2 1 5 5 C 1.53123 * 109.51753 * 90.32239 * 3 2 1 6 6 C 1.53034 * 109.28182 * 62.25004 * 5 3 2 7 7 N 1.46839 * 109.52552 * 59.17780 * 6 5 3 8 8 C 1.46901 * 111.00222 * 174.16216 * 7 6 5 9 9 C 1.50701 * 109.46921 * 294.20814 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47162 * 90.00410 * 12 11 9 14 14 H 1.07998 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47303 * 119.99759 * 17 15 13 20 20 H 1.48495 * 109.47340 * 239.99921 * 17 15 13 21 21 C 1.46490 * 120.00111 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47305 * 89.99580 * 21 11 9 23 23 C 1.47208 * 109.47132 * 179.97438 * 22 21 11 24 24 N 9.29090 * 155.32907 * 140.79041 * 2 1 3 25 25 C 1.46849 * 111.20047 * 298.25821 * 7 6 5 26 26 C 1.53041 * 109.52442 * 61.73811 * 25 7 6 27 27 H 1.09008 * 109.50067 * 60.80475 * 26 25 7 28 28 C 1.52992 * 109.50615 * 180.88246 * 26 25 7 29 29 H 1.09008 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47556 * 299.99494 * 1 2 3 31 31 H 1.09004 * 109.47492 * 59.99846 * 1 2 3 32 32 H 1.09006 * 109.49682 * 182.19054 * 5 3 2 33 33 H 1.09002 * 109.50070 * 302.26542 * 5 3 2 34 34 H 1.09006 * 109.45860 * 299.16276 * 6 5 3 35 35 H 1.09002 * 109.46096 * 179.19442 * 6 5 3 36 36 H 1.09002 * 109.47401 * 174.20842 * 8 7 6 37 37 H 1.09001 * 109.46874 * 54.20855 * 8 7 6 38 38 H 1.09000 * 109.47018 * 209.99971 * 12 11 9 39 39 H 1.09000 * 109.47828 * 330.00266 * 12 11 9 40 40 H 0.97001 * 119.99961 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.47028 * 209.99878 * 21 11 9 42 42 H 1.09002 * 109.47109 * 329.99455 * 21 11 9 43 43 H 1.09001 * 109.47263 * 299.99631 * 22 21 11 44 44 H 1.08996 * 109.47107 * 60.00334 * 22 21 11 45 45 H 1.08991 * 109.46839 * 181.75791 * 25 7 6 46 46 H 1.09001 * 109.46094 * 301.73336 * 25 7 6 47 47 H 1.08996 * 109.47192 * 60.00337 * 28 26 25 48 48 H 1.09005 * 109.47096 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.47107 * 300.00077 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2256 1.7695 1.4432 6 6 3.2079 0.8231 2.1370 7 7 4.4834 0.8199 1.4094 8 6 5.4951 0.0300 2.1238 9 6 5.8243 0.7010 3.4324 10 8 5.2703 1.7352 3.7398 11 7 6.7337 0.1513 4.2616 12 6 7.0533 0.8034 5.5339 13 6 6.1326 0.2858 6.6089 14 1 5.3840 -0.4545 6.3682 15 6 6.2459 0.7573 7.8995 16 7 7.1579 1.6585 8.1926 17 14 5.1052 0.1152 9.2321 18 1 4.1759 -0.8852 8.6484 19 1 5.9083 -0.5221 10.3064 20 1 4.3241 1.2429 9.8007 21 6 7.4024 -1.0981 3.8905 22 6 8.6812 -0.7807 3.1128 23 6 9.3535 -2.0363 2.7405 24 7 9.8718 -3.0049 2.4516 25 6 4.3095 0.3328 0.0351 26 6 3.3600 1.2645 -0.7216 27 1 3.7854 2.2676 -0.7561 28 6 3.1619 0.7444 -2.1467 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.6328 2.7807 1.4433 33 1 1.2738 1.7604 1.9743 34 1 2.7939 -0.1852 2.1487 35 1 3.3745 1.1591 3.1605 36 1 6.3966 -0.0416 1.5153 37 1 5.1061 -0.9700 2.3160 38 1 8.0864 0.5853 5.8044 39 1 6.9239 1.8809 5.4326 40 1 7.2379 1.9900 9.1007 41 1 7.6544 -1.6569 4.7919 42 1 6.7368 -1.6952 3.2671 43 1 8.4291 -0.2220 2.2115 44 1 9.3468 -0.1837 3.7362 45 1 5.2761 0.3126 -0.4682 46 1 3.8903 -0.6732 0.0566 47 1 2.7353 -0.2580 -2.1116 48 1 2.4859 1.4087 -2.6852 49 1 4.1236 0.7123 -2.6588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364714147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:34 Heat of formation + Delta-G solvation = -50.457659 kcal Electronic energy + Delta-G solvation = -28473.733308 eV Core-core repulsion = 24629.150801 eV Total energy + Delta-G solvation = -3844.582507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03908 -38.98943 -36.96976 -36.54691 -35.15630 -33.59480 -32.84112 -31.64300 -30.80345 -28.44683 -27.08656 -26.62397 -25.88769 -23.97850 -23.37518 -22.39495 -21.56622 -19.61654 -18.42245 -17.57455 -16.67300 -16.45653 -16.41150 -15.86991 -15.63630 -15.61082 -14.97946 -14.73566 -14.65334 -14.35159 -13.98919 -13.82853 -13.62282 -13.46380 -13.23748 -12.85008 -12.57096 -12.43303 -12.38781 -12.26976 -12.13836 -11.94767 -11.81521 -11.54497 -11.44767 -11.25406 -11.08385 -10.95575 -10.93884 -10.88104 -10.69219 -10.60907 -10.27155 -10.16332 -9.67001 -9.55822 -8.88361 -8.46628 -8.05490 -7.78709 -6.07853 -4.12240 2.75091 2.83182 3.28131 3.34324 3.37046 3.41520 3.53128 3.68457 4.01976 4.33862 4.43501 4.58592 4.74441 4.88408 4.99212 5.03554 5.11405 5.15474 5.19693 5.21665 5.28026 5.34203 5.42338 5.43448 5.47601 5.49174 5.49657 5.59205 5.61901 5.70056 5.76071 5.83949 5.86092 5.96819 6.02048 6.10206 6.20748 6.29603 6.40018 6.92077 7.09504 7.17806 7.27919 7.40531 7.47759 7.59426 7.88850 8.19266 8.31841 8.87544 9.05965 9.53437 11.00210 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009945 B = 0.003822 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.897576 B = 7323.582508 C = 9340.150857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.090 3.910 4 H 0.058 0.942 5 C -0.134 4.134 6 C 0.056 3.944 7 N -0.520 5.520 8 C 0.035 3.965 9 C 0.509 3.491 10 O -0.514 6.514 11 N -0.600 5.600 12 C 0.246 3.754 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.118 3.882 22 C -0.051 4.051 23 C 0.218 3.782 24 N -0.447 5.447 25 C 0.064 3.936 26 C -0.082 4.082 27 H 0.089 0.911 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -2.015 -18.492 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.032 3.968 4 H 0.076 0.924 5 C -0.172 4.172 6 C -0.071 4.071 7 N -0.245 5.245 8 C -0.096 4.096 9 C 0.295 3.705 10 O -0.389 6.389 11 N -0.333 5.333 12 C 0.127 3.873 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.009 4.009 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.124 5.124 25 C -0.063 4.063 26 C -0.101 4.101 27 H 0.108 0.892 28 C -0.201 4.201 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.839 -2.460 -18.601 19.971 hybrid contribution -1.234 -0.608 1.047 1.729 sum -8.073 -3.068 -17.554 19.564 Atomic orbital electron populations 1.22738 0.81663 1.02392 0.99703 1.87904 1.19028 1.27949 1.94998 1.22258 0.94351 0.84308 0.95848 0.92383 1.22021 0.99181 1.00752 0.95232 1.22135 0.87729 0.97745 0.99494 1.61588 1.08440 1.52964 1.01463 1.22069 0.97041 0.95532 0.94992 1.20194 0.80095 0.85452 0.84761 1.90651 1.49934 1.23299 1.75051 1.48222 1.40071 1.23641 1.21321 1.19323 0.96035 0.94450 0.77485 1.21459 1.17895 1.24005 0.93211 0.92418 1.24907 0.95573 0.94921 0.98560 1.69930 1.33697 1.29480 1.20115 0.86486 0.80765 0.78781 0.81645 1.19845 1.21003 1.20909 1.21287 0.91443 0.88004 1.00125 1.19920 0.97934 0.88410 1.02963 1.29131 0.93380 0.94647 0.92892 1.81201 1.09861 1.11713 1.09646 1.22053 0.98784 0.96643 0.88866 1.21260 0.93772 1.00757 0.94338 0.89237 1.21728 1.01459 1.01746 0.95147 0.89996 0.94143 0.94406 0.89994 0.91671 0.95031 0.88281 0.88650 0.92484 0.94824 0.93532 0.92758 0.88833 0.90837 0.87536 0.86466 0.91040 0.94162 0.91976 0.92938 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.24 8.44 -35.23 -0.30 -4.54 16 3 C 0.09 0.96 2.40 -26.61 -0.06 0.89 16 4 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 5 C -0.13 -1.68 5.79 -26.65 -0.15 -1.83 16 6 C 0.06 0.85 4.97 -3.84 -0.02 0.83 16 7 N -0.52 -7.34 4.40 -236.11 -1.04 -8.38 16 8 C 0.03 0.48 4.00 -4.97 -0.02 0.46 16 9 C 0.51 9.39 7.35 -10.98 -0.08 9.31 16 10 O -0.51 -11.77 13.90 5.56 0.08 -11.69 16 11 N -0.60 -10.93 2.46 -175.06 -0.43 -11.36 16 12 C 0.25 5.80 5.16 -5.19 -0.03 5.77 16 13 C -0.53 -14.01 9.39 -34.44 -0.32 -14.34 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 17 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.12 1.58 5.17 -4.05 -0.02 1.55 16 22 C -0.05 -0.53 6.03 -29.51 -0.18 -0.71 16 23 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 24 N -0.45 -6.60 18.54 42.15 0.78 -5.81 16 25 C 0.06 0.73 4.61 -3.83 -0.02 0.72 16 26 C -0.08 -0.84 2.72 -90.54 -0.25 -1.08 16 27 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 28 C -0.14 -1.19 9.03 37.15 0.34 -0.86 16 29 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.04 0.33 7.86 -51.93 -0.41 -0.08 16 31 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.77 7.86 -51.93 -0.41 0.36 16 34 H 0.03 0.48 7.76 -51.93 -0.40 0.08 16 35 H 0.10 1.83 5.78 -51.93 -0.30 1.53 16 36 H 0.10 1.04 7.03 -51.93 -0.37 0.68 16 37 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 38 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 43 H 0.11 0.91 7.22 -51.93 -0.38 0.54 16 44 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 46 H 0.04 0.49 7.76 -51.93 -0.40 0.08 16 47 H 0.06 0.56 7.62 -51.93 -0.40 0.17 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -32.57 395.36 -7.69 -40.27 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.32 Total: -1.91 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.14 Total: 6.00 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.05 Total: -50.28 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.22 Total: -16.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.57 -7.69 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364714147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.189 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds