Wall clock time and date at job start Tue Mar 31 2020 14:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99824 * 2 1 4 4 H 1.08993 * 109.57490 * 330.16020 * 3 2 1 5 5 C 1.53123 * 109.51753 * 90.32239 * 3 2 1 6 6 C 1.53034 * 109.28182 * 62.25004 * 5 3 2 7 7 N 1.46839 * 109.52552 * 59.17780 * 6 5 3 8 8 C 1.46901 * 111.00222 * 174.16216 * 7 6 5 9 9 C 1.50701 * 109.46921 * 294.20814 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47162 * 90.00410 * 12 11 9 14 14 H 1.07998 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47303 * 119.99759 * 17 15 13 20 20 H 1.48495 * 109.47340 * 239.99921 * 17 15 13 21 21 C 1.46490 * 120.00111 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47305 * 89.99580 * 21 11 9 23 23 C 1.47208 * 109.47132 * 179.97438 * 22 21 11 24 24 N 9.29090 * 155.32907 * 140.79041 * 2 1 3 25 25 C 1.46849 * 111.20047 * 298.25821 * 7 6 5 26 26 C 1.53041 * 109.52442 * 61.73811 * 25 7 6 27 27 H 1.09008 * 109.50067 * 60.80475 * 26 25 7 28 28 C 1.52992 * 109.50615 * 180.88246 * 26 25 7 29 29 H 1.09008 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47556 * 299.99494 * 1 2 3 31 31 H 1.09004 * 109.47492 * 59.99846 * 1 2 3 32 32 H 1.09006 * 109.49682 * 182.19054 * 5 3 2 33 33 H 1.09002 * 109.50070 * 302.26542 * 5 3 2 34 34 H 1.09006 * 109.45860 * 299.16276 * 6 5 3 35 35 H 1.09002 * 109.46096 * 179.19442 * 6 5 3 36 36 H 1.09002 * 109.47401 * 174.20842 * 8 7 6 37 37 H 1.09001 * 109.46874 * 54.20855 * 8 7 6 38 38 H 1.09000 * 109.47018 * 209.99971 * 12 11 9 39 39 H 1.09000 * 109.47828 * 330.00266 * 12 11 9 40 40 H 0.97001 * 119.99961 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.47028 * 209.99878 * 21 11 9 42 42 H 1.09002 * 109.47109 * 329.99455 * 21 11 9 43 43 H 1.09001 * 109.47263 * 299.99631 * 22 21 11 44 44 H 1.08996 * 109.47107 * 60.00334 * 22 21 11 45 45 H 1.08991 * 109.46839 * 181.75791 * 25 7 6 46 46 H 1.09001 * 109.46094 * 301.73336 * 25 7 6 47 47 H 1.08996 * 109.47192 * 60.00337 * 28 26 25 48 48 H 1.09005 * 109.47096 * 180.02562 * 28 26 25 49 49 H 1.09004 * 109.47107 * 300.00077 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 -0.5110 5 6 2.2256 1.7695 1.4432 6 6 3.2079 0.8231 2.1370 7 7 4.4834 0.8199 1.4094 8 6 5.4951 0.0300 2.1238 9 6 5.8243 0.7010 3.4324 10 8 5.2703 1.7352 3.7398 11 7 6.7337 0.1513 4.2616 12 6 7.0533 0.8034 5.5339 13 6 6.1326 0.2858 6.6089 14 1 5.3840 -0.4545 6.3682 15 6 6.2459 0.7573 7.8995 16 7 7.1579 1.6585 8.1926 17 14 5.1052 0.1152 9.2321 18 1 4.1759 -0.8852 8.6484 19 1 5.9083 -0.5221 10.3064 20 1 4.3241 1.2429 9.8007 21 6 7.4024 -1.0981 3.8905 22 6 8.6812 -0.7807 3.1128 23 6 9.3535 -2.0363 2.7405 24 7 9.8718 -3.0049 2.4516 25 6 4.3095 0.3328 0.0351 26 6 3.3600 1.2645 -0.7216 27 1 3.7854 2.2676 -0.7561 28 6 3.1619 0.7444 -2.1467 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.6328 2.7807 1.4433 33 1 1.2738 1.7604 1.9743 34 1 2.7939 -0.1852 2.1487 35 1 3.3745 1.1591 3.1605 36 1 6.3966 -0.0416 1.5153 37 1 5.1061 -0.9700 2.3160 38 1 8.0864 0.5853 5.8044 39 1 6.9239 1.8809 5.4326 40 1 7.2379 1.9900 9.1007 41 1 7.6544 -1.6569 4.7919 42 1 6.7368 -1.6952 3.2671 43 1 8.4291 -0.2220 2.2115 44 1 9.3468 -0.1837 3.7362 45 1 5.2761 0.3126 -0.4682 46 1 3.8903 -0.6732 0.0566 47 1 2.7353 -0.2580 -2.1116 48 1 2.4859 1.4087 -2.6852 49 1 4.1236 0.7123 -2.6588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364714147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:33 Heat of formation + Delta-G solvation = -71.767177 kcal Electronic energy + Delta-G solvation = -28474.657358 eV Core-core repulsion = 24629.150801 eV Total energy + Delta-G solvation = -3845.506557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17021 -40.17358 -38.04130 -37.56390 -36.56950 -34.89954 -34.39144 -32.64416 -32.12036 -29.92734 -28.03316 -27.80445 -26.80631 -25.29537 -24.78969 -23.55852 -22.67004 -20.50325 -19.82055 -18.78571 -18.31153 -17.94364 -17.30272 -17.06361 -16.76051 -16.46447 -16.35111 -16.10658 -15.70877 -15.55375 -15.28173 -14.94237 -14.62925 -14.42543 -14.26223 -14.13279 -13.96442 -13.57382 -13.51084 -13.38274 -13.26300 -13.05830 -12.94430 -12.76363 -12.70067 -12.54211 -12.46815 -12.43464 -12.15920 -12.01698 -11.88004 -11.69357 -11.66565 -11.58333 -11.14130 -10.58051 -10.50713 -10.24928 -9.41037 -9.15066 -8.16773 -6.28826 1.38437 1.41020 1.51239 1.71345 1.86141 1.96201 2.25909 2.44190 2.87274 3.03859 3.14336 3.23456 3.76459 3.80116 3.93011 4.03843 4.07866 4.14838 4.23237 4.32851 4.41863 4.47632 4.49569 4.55854 4.58084 4.64528 4.65979 4.79390 4.86023 4.86530 4.89236 4.90339 4.98348 5.08196 5.10616 5.15797 5.20279 5.24766 5.33122 5.37187 5.53451 5.64446 5.91102 6.06636 6.15649 6.25202 6.34536 6.62547 6.79395 6.86656 7.37091 7.61259 8.89854 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009945 B = 0.003822 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.897576 B = 7323.582508 C = 9340.150857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.094 3.906 4 H 0.075 0.925 5 C -0.132 4.132 6 C 0.063 3.937 7 N -0.534 5.534 8 C 0.045 3.955 9 C 0.503 3.497 10 O -0.568 6.568 11 N -0.601 5.601 12 C 0.262 3.738 13 C -0.538 4.538 14 H 0.051 0.949 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.273 1.273 20 H -0.285 1.285 21 C 0.114 3.886 22 C -0.037 4.037 23 C 0.246 3.754 24 N -0.490 5.490 25 C 0.066 3.934 26 C -0.083 4.083 27 H 0.088 0.912 28 C -0.135 4.135 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.056 0.944 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 -3.207 -20.704 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.036 3.964 4 H 0.093 0.907 5 C -0.170 4.170 6 C -0.065 4.065 7 N -0.258 5.258 8 C -0.086 4.086 9 C 0.291 3.709 10 O -0.447 6.447 11 N -0.332 5.332 12 C 0.141 3.859 13 C -0.576 4.576 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.198 1.198 20 H -0.211 1.211 21 C -0.011 4.011 22 C -0.078 4.078 23 C -0.071 4.071 24 N -0.168 5.168 25 C -0.061 4.061 26 C -0.102 4.102 27 H 0.106 0.894 28 C -0.192 4.192 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.155 0.845 44 H 0.138 0.862 45 H 0.110 0.890 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.273 -3.698 -20.847 22.386 hybrid contribution -1.126 -0.214 1.745 2.088 sum -8.399 -3.912 -19.101 21.230 Atomic orbital electron populations 1.22895 0.80412 1.03311 1.00384 1.87880 1.20498 1.28100 1.94996 1.22226 0.95245 0.84619 0.94266 0.90678 1.21997 0.98462 0.99661 0.96885 1.21923 0.88991 0.97704 0.97832 1.61576 1.07824 1.53739 1.02685 1.22071 0.98710 0.95118 0.92712 1.21089 0.78894 0.84853 0.86040 1.90634 1.51662 1.25903 1.76462 1.48096 1.40589 1.24904 1.19639 1.18761 0.95345 0.92324 0.79469 1.21775 1.17986 1.23619 0.94264 0.93116 1.25694 0.96985 0.95198 1.00829 1.70029 1.35184 1.30633 1.20675 0.85543 0.78992 0.78148 0.79176 1.19414 1.19830 1.21064 1.21491 0.93014 0.85887 1.00677 1.19838 0.96260 0.87836 1.03891 1.29153 0.92328 0.94082 0.91526 1.81246 1.11247 1.12946 1.11343 1.22144 1.00232 0.96542 0.87153 1.21295 0.93076 1.00558 0.95270 0.89354 1.21655 1.02336 1.01394 0.93850 0.89053 0.94374 0.92779 0.90977 0.91567 0.95586 0.92568 0.84776 0.91052 0.94859 0.97835 0.92610 0.89948 0.88005 0.84462 0.86167 0.88965 0.94556 0.92626 0.91946 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 113.37 1.23 1.62 16 2 O -0.40 -8.13 8.44 -148.98 -1.26 -9.39 16 3 C 0.09 1.84 2.40 30.68 0.07 1.92 16 4 H 0.08 1.22 7.79 -2.39 -0.02 1.20 16 5 C -0.13 -3.31 5.79 30.65 0.18 -3.13 16 6 C 0.06 1.93 4.97 86.33 0.43 2.36 16 7 N -0.53 -14.40 4.40 -900.93 -3.96 -18.36 16 8 C 0.04 1.14 4.00 85.56 0.34 1.48 16 9 C 0.50 18.55 7.35 87.66 0.64 19.19 16 10 O -0.57 -27.12 13.90 -3.03 -0.04 -27.16 16 11 N -0.60 -21.79 2.46 -826.16 -2.03 -23.82 16 12 C 0.26 12.75 5.16 85.64 0.44 13.19 16 13 C -0.54 -29.28 9.39 25.60 0.24 -29.04 16 14 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 15 C 0.01 0.67 5.46 84.65 0.46 1.13 16 16 N -0.93 -53.92 13.29 21.45 0.28 -53.64 16 17 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 C 0.11 2.83 5.17 86.38 0.45 3.28 16 22 C -0.04 -0.68 6.03 28.79 0.17 -0.50 16 23 C 0.25 5.36 15.43 89.45 1.38 6.74 16 24 N -0.49 -13.58 18.54 20.01 0.37 -13.21 16 25 C 0.07 1.33 4.61 86.33 0.40 1.73 16 26 C -0.08 -1.49 2.72 -10.74 -0.03 -1.52 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 C -0.13 -1.83 9.03 71.98 0.65 -1.18 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.04 0.58 7.86 -2.39 -0.02 0.56 16 31 H 0.05 0.63 8.09 -2.38 -0.02 0.61 16 32 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 1.58 7.86 -2.39 -0.02 1.57 16 34 H 0.03 0.80 7.76 -2.38 -0.02 0.78 16 35 H 0.06 2.20 5.78 -2.39 -0.01 2.19 16 36 H 0.13 2.36 7.03 -2.39 -0.02 2.34 16 37 H 0.07 1.66 7.38 -2.39 -0.02 1.64 16 38 H 0.03 1.60 8.07 -2.39 -0.02 1.59 16 39 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 40 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.08 2.26 8.07 -2.38 -0.02 2.25 16 42 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 43 H 0.14 1.75 7.22 -2.39 -0.02 1.74 16 44 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.09 1.48 8.01 -2.39 -0.02 1.46 16 46 H 0.04 0.78 7.76 -2.39 -0.02 0.76 16 47 H 0.05 0.85 7.62 -2.39 -0.02 0.83 16 48 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -74.17 395.36 3.37 -70.80 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.92 Total: 11.45 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.06 Total: 17.27 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -5.33 Total: -109.03 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.30 Total: -36.55 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -74.17 3.37 -70.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364714147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.966 kcal (2) G-P(sol) polarization free energy of solvation -74.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds