Wall clock time and date at job start Tue Mar 31 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99813 * 2 1 4 4 H 1.09001 * 109.52703 * 29.87249 * 3 2 1 5 5 C 1.53099 * 109.57804 * 269.70694 * 3 2 1 6 6 C 1.53034 * 109.29509 * 182.40459 * 5 3 2 7 7 N 1.46847 * 109.51345 * 59.18740 * 6 5 3 8 8 C 1.46898 * 110.99897 * 174.16738 * 7 6 5 9 9 C 1.50700 * 109.47111 * 293.95217 * 8 7 6 10 10 O 1.21278 * 120.00062 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99634 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99758 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.47118 * 89.99945 * 12 11 9 14 14 H 1.07999 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99974 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00487 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46899 * 359.97438 * 17 15 13 19 19 H 1.48489 * 109.47361 * 119.99846 * 17 15 13 20 20 H 1.48502 * 109.46993 * 240.00330 * 17 15 13 21 21 C 1.46499 * 120.00409 * 359.97438 * 11 9 8 22 22 C 1.53005 * 109.46970 * 90.00251 * 21 11 9 23 23 C 1.47201 * 109.46622 * 180.02562 * 22 21 11 24 24 N 9.29361 * 165.81031 * 202.58092 * 3 1 2 25 25 C 1.46854 * 111.19790 * 298.26320 * 7 6 5 26 26 C 1.53039 * 109.52227 * 61.74204 * 25 7 6 27 27 H 1.08994 * 109.50227 * 60.75933 * 26 25 7 28 28 C 1.52992 * 109.50364 * 180.88292 * 26 25 7 29 29 H 1.08996 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46923 * 299.99966 * 1 2 3 31 31 H 1.08998 * 109.47046 * 60.00306 * 1 2 3 32 32 H 1.09007 * 109.48839 * 62.46101 * 5 3 2 33 33 H 1.09009 * 109.50682 * 302.35887 * 5 3 2 34 34 H 1.09002 * 109.46271 * 299.17460 * 6 5 3 35 35 H 1.08994 * 109.46242 * 179.19760 * 6 5 3 36 36 H 1.09000 * 109.47095 * 53.95538 * 8 7 6 37 37 H 1.09006 * 109.47048 * 173.94984 * 8 7 6 38 38 H 1.09001 * 109.47709 * 210.00035 * 12 11 9 39 39 H 1.09007 * 109.47187 * 330.00059 * 12 11 9 40 40 H 0.96998 * 120.00288 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47093 * 209.99939 * 21 11 9 42 42 H 1.08996 * 109.47242 * 330.00059 * 21 11 9 43 43 H 1.09000 * 109.46958 * 299.99771 * 22 21 11 44 44 H 1.08996 * 109.47295 * 59.99840 * 22 21 11 45 45 H 1.08993 * 109.46229 * 181.76227 * 25 7 6 46 46 H 1.09008 * 109.45803 * 301.73838 * 25 7 6 47 47 H 1.08999 * 109.47439 * 59.99793 * 28 26 25 48 48 H 1.08994 * 109.47441 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.47365 * 300.00162 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 2.0006 0.5117 5 6 2.2256 1.7711 -1.4425 6 6 2.9028 3.1434 -1.4350 7 7 4.1900 3.0514 -0.7343 8 6 4.9315 4.3161 -0.8271 9 6 5.3211 4.5659 -2.2613 10 8 5.0119 3.7687 -3.1213 11 7 6.0140 5.6748 -2.5880 12 6 6.3932 5.9174 -3.9821 13 6 5.3045 6.7003 -4.6699 14 1 4.4189 6.9886 -4.1231 15 6 5.4391 7.0483 -5.9971 16 7 6.5176 6.6977 -6.6629 17 14 4.0899 8.0194 -6.8495 18 1 2.9905 8.2881 -5.8880 19 1 4.6424 9.3064 -7.3427 20 1 3.5638 7.2348 -7.9953 21 6 6.3879 6.6376 -1.5490 22 6 7.7554 6.2624 -0.9744 23 6 8.1308 7.2295 0.0699 24 7 8.4209 7.9769 0.8748 25 6 4.0046 2.6516 0.6666 26 6 3.3601 1.2647 0.7216 27 1 4.0122 0.5408 0.2329 28 6 3.1471 0.8579 2.1810 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2630 1.8430 -1.9490 33 1 2.8598 1.0551 -1.9653 34 1 2.2618 3.8620 -0.9243 35 1 3.0704 3.4713 -2.4609 36 1 4.3022 5.1330 -0.4740 37 1 5.8293 4.2569 -0.2117 38 1 7.3233 6.4850 -4.0122 39 1 6.5327 4.9641 -4.4919 40 1 6.6125 6.9429 -7.5966 41 1 6.4371 7.6373 -1.9807 42 1 5.6428 6.6216 -0.7537 43 1 7.7062 5.2628 -0.5427 44 1 8.5005 6.2784 -1.7698 45 1 4.9724 2.6225 1.1670 46 1 3.3583 3.3725 1.1674 47 1 2.4935 1.5816 2.6682 48 1 2.6885 -0.1301 2.2196 49 1 4.1079 0.8325 2.6951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364714150.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:42 Heat of formation + Delta-G solvation = -51.889198 kcal Electronic energy + Delta-G solvation = -28230.813463 eV Core-core repulsion = 24386.168879 eV Total energy + Delta-G solvation = -3844.644584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.03358 -38.98815 -37.15347 -36.72661 -35.20637 -33.61140 -32.86499 -31.73015 -30.83870 -28.50147 -27.15919 -26.74053 -25.71508 -24.01045 -23.23207 -22.45155 -21.60037 -19.95796 -18.47551 -17.61067 -16.87211 -16.66588 -16.46441 -15.80211 -15.62982 -15.50225 -15.04042 -14.79495 -14.65760 -14.48700 -13.92782 -13.87482 -13.74482 -13.48006 -13.29414 -12.91052 -12.62629 -12.52585 -12.43565 -12.24152 -12.06028 -12.00571 -11.89358 -11.63474 -11.52335 -11.29203 -11.05214 -11.02473 -10.98369 -10.84554 -10.77178 -10.63414 -10.46338 -10.19390 -9.69852 -9.54702 -8.96532 -8.48722 -8.19079 -7.82644 -6.09903 -4.14577 2.71786 2.79998 3.26524 3.30333 3.35266 3.38185 3.47962 3.59975 3.92162 4.27386 4.40702 4.56048 4.73891 4.86450 4.94411 5.01686 5.07254 5.12164 5.15150 5.20001 5.24936 5.25948 5.30791 5.33533 5.38344 5.39705 5.45163 5.50332 5.57188 5.62320 5.63927 5.76994 5.82322 5.93826 6.03018 6.06396 6.15748 6.22924 6.36195 6.85814 7.06705 7.09610 7.15137 7.37571 7.44153 7.56319 7.86408 8.16592 8.27599 8.84587 9.01599 9.51176 10.98161 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.003649 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.562424 B = 7670.885814 C = 9953.344093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.093 3.907 4 H 0.054 0.946 5 C -0.134 4.134 6 C 0.053 3.947 7 N -0.520 5.520 8 C 0.034 3.966 9 C 0.508 3.492 10 O -0.513 6.513 11 N -0.599 5.599 12 C 0.246 3.754 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.118 3.882 22 C -0.051 4.051 23 C 0.217 3.783 24 N -0.446 5.446 25 C 0.063 3.937 26 C -0.084 4.084 27 H 0.089 0.911 28 C -0.143 4.143 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 -8.817 16.330 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.035 3.965 4 H 0.072 0.928 5 C -0.172 4.172 6 C -0.074 4.074 7 N -0.244 5.244 8 C -0.097 4.097 9 C 0.294 3.706 10 O -0.388 6.388 11 N -0.332 5.332 12 C 0.127 3.873 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.009 4.009 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.124 5.124 25 C -0.065 4.065 26 C -0.103 4.103 27 H 0.108 0.892 28 C -0.201 4.201 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.099 0.901 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.919 -8.648 16.620 19.648 hybrid contribution -1.480 1.278 -0.481 2.013 sum -7.399 -7.370 16.140 19.223 Atomic orbital electron populations 1.22750 0.81539 1.02447 0.99794 1.87902 1.19185 1.27946 1.95041 1.22275 0.94266 0.84102 0.95823 0.92789 1.22032 1.00769 0.97817 0.96570 1.22238 0.87956 0.95664 1.01573 1.61556 1.20012 1.30013 1.12810 1.22098 0.99518 0.91485 0.96645 1.20163 0.79096 0.81598 0.89749 1.90666 1.52703 1.44883 1.50514 1.48228 1.54671 1.20311 1.09997 1.19335 0.95584 0.97985 0.74399 1.21445 1.04595 1.34791 0.95831 0.92433 1.24910 0.95793 0.96079 0.97171 1.69925 1.26963 1.46246 1.10013 0.86485 0.81957 0.79584 0.79635 1.19871 1.20992 1.20882 1.21290 0.92644 0.95364 0.91559 1.19920 1.01013 0.94946 0.93369 1.29133 0.93122 0.93972 0.93856 1.81210 1.09154 1.10453 1.11565 1.22148 1.00309 0.95181 0.88851 1.21206 0.95523 0.97527 0.96029 0.89220 1.21742 1.01544 1.01772 0.95001 0.89861 0.94391 0.94081 0.91644 0.89806 0.95755 0.87622 0.92424 0.88438 0.94793 0.93495 0.92721 0.88800 0.90879 0.87536 0.86422 0.90129 0.95001 0.93234 0.91763 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.35 9.80 -35.23 -0.35 -4.70 16 3 C 0.09 1.03 2.08 -26.62 -0.06 0.97 16 4 H 0.05 0.55 7.79 -51.93 -0.40 0.15 16 5 C -0.13 -1.71 5.72 -26.66 -0.15 -1.86 16 6 C 0.05 0.75 5.11 -3.84 -0.02 0.73 16 7 N -0.52 -6.97 4.39 -236.11 -1.04 -8.01 16 8 C 0.03 0.43 4.00 -4.98 -0.02 0.41 16 9 C 0.51 9.10 7.35 -10.98 -0.08 9.02 16 10 O -0.51 -11.56 13.93 5.56 0.08 -11.48 16 11 N -0.60 -10.64 2.46 -175.05 -0.43 -11.07 16 12 C 0.25 5.71 5.16 -5.19 -0.03 5.69 16 13 C -0.53 -13.86 9.39 -34.44 -0.32 -14.19 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.12 1.51 5.17 -4.04 -0.02 1.49 16 22 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 23 C 0.22 2.54 15.43 -20.76 -0.32 2.22 16 24 N -0.45 -6.43 18.54 42.16 0.78 -5.65 16 25 C 0.06 0.65 4.74 -3.83 -0.02 0.64 16 26 C -0.08 -0.87 2.61 -90.54 -0.24 -1.11 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 C -0.14 -1.21 9.07 37.15 0.34 -0.87 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 32 H 0.06 0.78 7.96 -51.93 -0.41 0.36 16 33 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.11 1.87 5.80 -51.93 -0.30 1.57 16 36 H 0.06 0.67 7.38 -51.93 -0.38 0.29 16 37 H 0.10 0.99 7.02 -51.93 -0.36 0.62 16 38 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 43 H 0.11 0.86 7.22 -51.93 -0.37 0.49 16 44 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 46 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -32.41 397.65 -7.74 -40.16 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.38 Total: -2.12 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.12 Total: 5.43 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.05 Total: -49.27 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.27 Total: -16.18 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.41 -7.74 -40.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364714150.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.732 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds