Wall clock time and date at job start Tue Mar 31 2020 14:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46543 * 2 1 4 4 C 1.53041 * 109.46032 * 240.04143 * 2 1 3 5 5 C 1.53628 * 109.24485 * 178.48931 * 4 2 1 6 6 N 1.46930 * 108.53974 * 54.85322 * 5 4 2 7 7 C 1.34783 * 120.62553 * 126.37660 * 6 5 4 8 8 O 1.21276 * 119.99832 * 184.46105 * 7 6 5 9 9 C 1.50698 * 120.00128 * 4.45055 * 7 6 5 10 10 H 1.09009 * 109.40206 * 307.58699 * 9 7 6 11 11 C 1.53064 * 109.39950 * 187.76256 * 9 7 6 12 12 C 1.53344 * 108.42589 * 190.97401 * 11 9 7 13 13 C 1.52924 * 108.67720 * 67.52589 * 12 11 9 14 14 N 1.45752 * 110.48416 * 309.24978 * 13 12 11 15 15 C 1.33351 * 124.10994 * 19.07456 * 14 13 12 16 16 O 1.21281 * 118.24524 * 177.79555 * 15 14 13 17 17 C 1.46920 * 118.74383 * 306.09584 * 6 5 4 18 18 H 1.09004 * 109.58897 * 294.07440 * 17 6 5 19 19 C 1.52992 * 109.58932 * 173.78987 * 17 6 5 20 20 N 1.46504 * 109.47085 * 67.98624 * 19 17 6 21 21 C 1.36939 * 119.99660 * 174.00207 * 20 19 17 22 22 H 1.07997 * 120.00386 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99598 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00173 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00038 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46986 * 60.00449 * 25 23 21 27 27 H 1.48505 * 109.47179 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47191 * 300.00333 * 25 23 21 29 29 C 1.53045 * 109.46293 * 119.97508 * 2 1 3 30 30 H 1.08994 * 109.46938 * 300.02139 * 1 2 3 31 31 H 1.08996 * 109.47289 * 60.02836 * 1 2 3 32 32 H 1.09008 * 109.46918 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.50154 * 298.56194 * 4 2 1 34 34 H 1.09000 * 109.49741 * 58.65926 * 4 2 1 35 35 H 1.09002 * 109.74026 * 295.12382 * 5 4 2 36 36 H 1.08996 * 109.67115 * 174.54933 * 5 4 2 37 37 H 1.09000 * 109.68161 * 71.23749 * 11 9 7 38 38 H 1.09003 * 109.70208 * 310.71849 * 11 9 7 39 39 H 1.08998 * 109.60949 * 187.28675 * 12 11 9 40 40 H 1.09006 * 109.60229 * 307.76827 * 12 11 9 41 41 H 1.08992 * 109.29775 * 69.56462 * 13 12 11 42 42 H 1.09001 * 109.30118 * 188.94136 * 13 12 11 43 43 H 0.97003 * 117.94720 * 199.07441 * 14 13 12 44 44 H 1.09001 * 109.47294 * 187.98818 * 19 17 6 45 45 H 1.09007 * 109.47167 * 307.98460 * 19 17 6 46 46 H 0.96988 * 119.99996 * 354.00119 * 20 19 17 47 47 H 0.96998 * 119.99626 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.49630 * 61.43442 * 29 2 1 49 49 H 1.08997 * 109.52068 * 301.35049 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5756 -0.6847 -1.2644 6 7 4.0679 -1.2488 -0.0002 7 6 4.9622 -2.2571 -0.0004 8 8 5.2998 -2.7684 1.0463 9 6 5.5426 -2.7494 -1.3011 10 1 4.7334 -2.9830 -1.9932 11 6 6.3710 -4.0104 -1.0433 12 6 7.1691 -4.3337 -2.3121 13 6 8.2161 -3.2394 -2.5242 14 7 7.5971 -1.9216 -2.4578 15 6 6.4122 -1.6793 -1.8960 16 8 6.0156 -0.5337 -1.8640 17 6 3.5715 -0.6887 1.2641 18 1 3.9143 0.3408 1.3674 19 6 4.0941 -1.5232 2.4351 20 7 5.5441 -1.3485 2.5504 21 6 6.2188 -1.9029 3.6053 22 1 5.6819 -2.4686 4.3524 23 6 7.5927 -1.7378 3.7143 24 7 8.2469 -1.0479 2.8040 25 14 8.5130 -2.4934 5.1536 26 1 8.3288 -3.9668 5.1402 27 1 9.9587 -2.1738 5.0395 28 1 7.9830 -1.9398 6.4255 29 6 2.0399 -0.7210 1.2500 30 1 -0.3633 0.5141 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7555 -1.2386 34 1 1.6571 -0.2205 -2.1399 35 1 3.9189 0.3452 -1.3631 36 1 3.9488 -1.2780 -2.0991 37 1 5.7085 -4.8424 -0.8045 38 1 7.0559 -3.8368 -0.2133 39 1 7.6655 -5.2972 -2.1964 40 1 6.4961 -4.3671 -3.1689 41 1 8.9807 -3.3178 -1.7514 42 1 8.6811 -3.3702 -3.5014 43 1 8.0772 -1.1737 -2.8467 44 1 3.6142 -1.1959 3.3574 45 1 3.8676 -2.5752 2.2612 46 1 6.0262 -0.8401 1.8797 47 1 9.2069 -0.9322 2.8805 48 1 1.6979 -1.7558 1.2380 49 1 1.6573 -0.2215 2.1401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689091854.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:02 Heat of formation + Delta-G solvation = -24.590479 kcal Electronic energy + Delta-G solvation = -30446.031457 eV Core-core repulsion = 26602.570634 eV Total energy + Delta-G solvation = -3843.460822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81461 -39.24752 -37.21502 -36.22814 -34.52341 -33.43780 -32.72210 -31.68586 -29.71166 -29.65335 -27.99991 -25.37205 -24.83243 -23.06802 -22.56366 -22.54266 -21.43078 -19.93337 -19.30953 -18.29895 -17.31539 -16.95191 -16.32729 -16.10365 -15.35122 -14.91341 -14.69740 -14.51392 -14.38433 -13.97117 -13.81453 -13.57903 -13.48243 -13.30124 -13.12761 -12.91473 -12.67126 -12.41430 -12.06370 -11.80627 -11.77542 -11.60341 -11.45037 -11.18659 -11.10498 -10.87485 -10.80182 -10.71694 -10.64509 -10.59281 -10.26052 -10.16316 -9.77039 -9.43326 -9.40911 -8.90037 -8.62512 -8.22367 -7.83004 -6.40265 -5.47855 -2.67311 2.74996 3.27349 3.57574 3.61031 3.62735 3.63446 3.70197 4.68645 4.73058 4.78477 4.79792 4.87815 4.90244 4.93878 5.00893 5.23811 5.33772 5.37772 5.40871 5.56321 5.63084 5.66975 5.68379 5.72353 5.80448 5.81755 5.86487 5.88705 5.92018 6.05162 6.10341 6.14203 6.22791 6.25206 6.27123 6.37818 6.53289 6.55803 6.67348 6.81610 6.91964 7.08752 7.42381 7.46073 7.92128 8.17095 8.41314 8.69481 9.07900 9.80636 10.42736 10.77309 11.75502 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.006453 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.344930 B = 4338.356246 C = 6635.276659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.132 3.868 6 N -0.601 5.601 7 C 0.487 3.513 8 O -0.438 6.438 9 C -0.120 4.120 10 H 0.112 0.888 11 C -0.108 4.108 12 C -0.134 4.134 13 C 0.109 3.891 14 N -0.717 5.717 15 C 0.533 3.467 16 O -0.540 6.540 17 C 0.143 3.857 18 H 0.066 0.934 19 C 0.162 3.838 20 N -0.693 5.693 21 C -0.206 4.206 22 H 0.063 0.937 23 C -0.022 4.022 24 N -0.937 5.937 25 Si 0.900 3.100 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.290 1.290 29 C -0.119 4.119 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.399 0.601 44 H 0.014 0.986 45 H 0.038 0.962 46 H 0.381 0.619 47 H 0.248 0.752 48 H 0.065 0.935 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -3.417 -15.914 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.172 4.172 5 C 0.008 3.992 6 N -0.337 5.337 7 C 0.270 3.730 8 O -0.306 6.306 9 C -0.144 4.144 10 H 0.130 0.870 11 C -0.146 4.146 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.369 5.369 15 C 0.319 3.681 16 O -0.417 6.417 17 C 0.040 3.960 18 H 0.084 0.916 19 C 0.035 3.965 20 N -0.336 5.336 21 C -0.338 4.338 22 H 0.081 0.919 23 C -0.217 4.217 24 N -0.588 5.588 25 Si 0.732 3.268 26 H -0.217 1.217 27 H -0.221 1.221 28 H -0.217 1.217 29 C -0.158 4.158 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.234 0.766 44 H 0.031 0.969 45 H 0.055 0.945 46 H 0.215 0.785 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.909 -3.424 -15.020 18.317 hybrid contribution 1.096 0.016 0.190 1.112 sum -8.813 -3.408 -14.830 17.584 Atomic orbital electron populations 1.21815 0.95490 1.01524 1.01310 1.21104 0.95104 0.99735 0.95082 0.91164 1.22179 0.96687 1.00697 0.97649 1.21608 0.91464 1.00002 0.86083 1.47587 1.44450 1.35635 1.06067 1.19643 0.80841 0.83047 0.89460 1.91155 1.56979 1.53402 1.29051 1.21426 0.98632 0.96024 0.98365 0.87049 1.21532 0.99347 0.95414 0.98303 1.21885 0.98066 0.98640 0.98603 1.21388 0.95927 0.82348 1.01881 1.45330 1.20374 1.11181 1.60008 1.19656 0.81745 0.89722 0.77018 1.90768 1.71558 1.21896 1.57511 1.21451 0.92285 0.97990 0.84308 0.91602 1.20865 0.86829 0.96947 0.91904 1.42290 1.01000 1.62017 1.28281 1.19119 0.90111 1.24565 1.00007 0.91855 1.24595 0.96387 1.02016 0.98653 1.69678 1.07141 1.46256 1.35721 0.86350 0.78961 0.78856 0.82594 1.21741 1.22093 1.21747 1.21953 0.95391 1.00963 0.97499 0.92797 0.93018 0.92903 0.92010 0.91535 0.91255 0.90889 0.90494 0.88846 0.89636 0.91397 0.91287 0.90897 0.76606 0.96870 0.94453 0.78524 0.94182 0.91665 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.19 37.16 0.34 -1.06 16 2 C -0.09 -1.09 2.68 -90.58 -0.24 -1.33 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.55 5.38 -26.38 -0.14 -1.70 16 5 C 0.13 1.92 4.45 -3.48 -0.02 1.91 16 6 N -0.60 -10.68 2.81 -164.96 -0.46 -11.14 16 7 C 0.49 9.58 6.15 -10.98 -0.07 9.51 16 8 O -0.44 -10.52 9.43 5.56 0.05 -10.46 16 9 C -0.12 -1.86 1.98 -93.15 -0.18 -2.05 16 10 H 0.11 1.40 7.08 -51.92 -0.37 1.04 16 11 C -0.11 -1.55 4.86 -26.52 -0.13 -1.68 16 12 C -0.13 -1.35 6.02 -26.59 -0.16 -1.51 16 13 C 0.11 1.15 7.17 -4.48 -0.03 1.12 16 14 N -0.72 -9.60 5.45 -61.39 -0.33 -9.93 16 15 C 0.53 8.76 7.02 -11.87 -0.08 8.68 16 16 O -0.54 -10.30 13.63 5.56 0.08 -10.23 16 17 C 0.14 2.64 2.93 -67.61 -0.20 2.44 16 18 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.16 3.66 4.87 -4.04 -0.02 3.64 16 20 N -0.69 -19.15 3.17 -59.91 -0.19 -19.34 16 21 C -0.21 -6.21 9.71 -15.06 -0.15 -6.35 16 22 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 24 N -0.94 -30.16 13.06 55.49 0.72 -29.43 16 25 Si 0.90 23.91 29.55 -169.99 -5.02 18.89 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 27 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 C -0.12 -1.69 4.66 -26.61 -0.12 -1.81 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.12 7.57 -51.93 -0.39 0.72 16 36 H 0.07 1.01 4.97 -51.93 -0.26 0.75 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.74 7.61 -51.93 -0.40 1.35 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.40 4.89 8.80 -40.82 -0.36 4.53 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.04 0.90 6.45 -51.92 -0.33 0.56 16 46 H 0.38 11.43 6.88 -40.82 -0.28 11.15 16 47 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -36.21 368.59 -9.18 -45.39 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -8.28 Total: 11.69 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.30 Total: 9.02 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -0.26 Total: -69.84 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.13 Total: -20.69 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.02 Total: 18.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.21 -9.18 -45.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689091854.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.797 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds