Wall clock time and date at job start Tue Mar 31 2020 14:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 115.56206 * 2 1 4 4 C 1.53008 * 117.49710 * 145.68690 * 2 1 3 5 5 C 1.53002 * 117.49948 * 214.30799 * 2 1 3 6 6 H 1.09004 * 117.51449 * 359.97438 * 5 2 1 7 7 C 1.50700 * 117.49881 * 145.02289 * 5 2 1 8 8 O 1.21272 * 120.00091 * 0.02562 * 7 5 2 9 9 N 1.34777 * 119.99822 * 180.02562 * 7 5 2 10 10 C 1.46932 * 120.62936 * 0.02562 * 9 7 5 11 11 C 1.53188 * 108.77876 * 233.58789 * 10 9 7 12 12 C 1.53042 * 109.33831 * 305.38531 * 11 10 9 13 13 C 1.53044 * 109.53915 * 61.31777 * 12 11 10 14 14 H 1.08998 * 109.49949 * 58.64868 * 13 12 11 15 15 N 1.46899 * 109.49683 * 178.71555 * 13 12 11 16 16 C 1.46900 * 111.00141 * 58.88613 * 15 13 12 17 17 C 1.46896 * 110.99882 * 294.93275 * 15 13 12 18 18 C 1.50700 * 109.46942 * 189.99952 * 17 15 13 19 19 O 1.21293 * 120.00282 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00075 * 179.97438 * 18 17 15 21 21 C 1.37104 * 120.00173 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99666 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00001 * 180.27893 * 21 20 18 24 24 N 1.31407 * 120.00135 * 179.72366 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 359.72088 * 23 21 20 26 26 H 1.48500 * 109.47210 * 89.99937 * 25 23 21 27 27 H 1.48496 * 109.47530 * 210.00374 * 25 23 21 28 28 H 1.48501 * 109.47312 * 330.00618 * 25 23 21 29 29 C 1.46923 * 120.63237 * 179.97438 * 9 7 5 30 30 H 1.08997 * 109.47240 * 205.69613 * 1 2 3 31 31 H 1.09004 * 109.47045 * 325.69176 * 1 2 3 32 32 H 1.08994 * 109.47084 * 85.68860 * 1 2 3 33 33 H 1.08998 * 117.49452 * 359.97438 * 4 2 1 34 34 H 1.08998 * 117.49445 * 214.98189 * 4 2 1 35 35 H 1.09000 * 109.58949 * 353.37978 * 10 9 7 36 36 H 1.09007 * 109.58396 * 113.80445 * 10 9 7 37 37 H 1.09001 * 109.49745 * 65.31712 * 11 10 9 38 38 H 1.08996 * 109.50147 * 185.38345 * 11 10 9 39 39 H 1.08993 * 109.43252 * 301.30870 * 12 11 10 40 40 H 1.09000 * 109.48674 * 181.34942 * 12 11 10 41 41 H 1.08999 * 109.47291 * 296.04597 * 16 15 13 42 42 H 1.09003 * 109.47182 * 56.04541 * 16 15 13 43 43 H 1.08998 * 109.47624 * 176.04616 * 16 15 13 44 44 H 1.08994 * 109.47346 * 70.00258 * 17 15 13 45 45 H 1.08998 * 109.47279 * 309.99930 * 17 15 13 46 46 H 0.97000 * 120.00140 * 0.02562 * 20 18 17 47 47 H 0.97004 * 120.00486 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.58190 * 6.62292 * 29 9 7 49 49 H 1.09000 * 109.70239 * 246.27079 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 1.6115 -1.8590 -1.2680 7 6 3.5293 -0.7812 -1.4607 8 8 3.9720 0.3462 -1.4008 9 7 4.1935 -1.7303 -2.1497 10 6 3.6694 -3.1005 -2.2318 11 6 4.7615 -4.0742 -1.7782 12 6 6.0281 -3.8352 -2.6033 13 6 6.5273 -2.4070 -2.3726 14 1 6.7287 -2.2588 -1.3117 15 7 7.7601 -2.1884 -3.1409 16 6 7.5314 -2.4043 -4.5759 17 6 8.8472 -3.0439 -2.6466 18 6 10.1465 -2.6237 -3.2839 19 8 10.1651 -1.7025 -4.0728 20 7 11.2879 -3.2715 -2.9774 21 6 12.4701 -2.8889 -3.5569 22 1 12.4866 -2.0686 -4.2593 23 6 13.6459 -3.5604 -3.2452 24 7 14.7781 -3.1973 -3.8047 25 14 13.6173 -4.9796 -2.0309 26 1 13.3772 -6.2506 -2.7604 27 1 14.9214 -5.0530 -1.3244 28 1 12.5304 -4.7634 -1.0424 29 6 5.4548 -1.4142 -2.8337 30 1 -0.3633 -0.9260 0.4456 31 1 -0.3633 0.8489 0.5793 32 1 -0.3633 0.0773 -1.0247 33 1 1.6111 -1.8582 1.2687 34 1 3.1715 -0.8751 1.2684 35 1 2.7996 -3.1986 -1.5823 36 1 3.3865 -3.3224 -3.2609 37 1 4.9792 -3.9107 -0.7228 38 1 4.4193 -5.0987 -1.9247 39 1 5.8039 -3.9752 -3.6607 40 1 6.7993 -4.5429 -2.2989 41 1 7.2620 -3.4463 -4.7482 42 1 6.7217 -1.7587 -4.9159 43 1 8.4408 -2.1681 -5.1284 44 1 8.6367 -4.0825 -2.9014 45 1 8.9245 -2.9439 -1.5639 46 1 11.2731 -4.0084 -2.3468 47 1 15.5991 -3.6658 -3.5869 48 1 5.7630 -0.3996 -2.5812 49 1 5.3188 -1.4971 -3.9120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752994593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:41 Heat of formation + Delta-G solvation = -28.652057 kcal Electronic energy + Delta-G solvation = -27917.248014 eV Core-core repulsion = 24073.611069 eV Total energy + Delta-G solvation = -3843.636945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75799 -39.27282 -38.09846 -36.90782 -35.79381 -33.91390 -32.44599 -31.67211 -30.60224 -29.06602 -27.99350 -26.15684 -25.50864 -24.28737 -23.20073 -22.38630 -21.20403 -19.92995 -19.30521 -18.96572 -18.22178 -17.75388 -16.46252 -16.15212 -15.48566 -15.36411 -15.13284 -14.92170 -14.66138 -14.49935 -14.21608 -13.95074 -13.92447 -13.57822 -13.31407 -13.12104 -13.09396 -12.84892 -12.78669 -12.43949 -12.38426 -11.94304 -11.81921 -11.74247 -11.45553 -11.30509 -11.12785 -11.07169 -10.90019 -10.86511 -10.73261 -10.58974 -10.39305 -9.97104 -9.94172 -9.52944 -8.89798 -8.52846 -8.17004 -7.90310 -6.29882 -3.81147 2.25911 2.63860 3.02906 3.06403 3.15083 3.45424 3.75063 3.94003 4.09223 4.10945 4.35609 4.39111 4.48808 4.59020 4.60926 4.72212 4.81975 4.86155 4.93250 5.06086 5.14495 5.19546 5.22875 5.25985 5.31496 5.35831 5.43462 5.48704 5.54158 5.57298 5.61924 5.66046 5.71897 5.75794 5.80058 5.85517 5.93635 5.96041 6.00193 6.10363 6.26808 6.52233 7.11612 7.19538 7.30277 7.59747 7.98388 8.16113 8.61607 8.96762 9.43769 9.85109 10.83279 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.002351 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.264844 B =11909.168740 C =12072.478699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.118 0.882 4 C -0.148 4.148 5 C -0.192 4.192 6 H 0.123 0.877 7 C 0.544 3.456 8 O -0.537 6.537 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.129 4.129 12 C -0.159 4.159 13 C 0.073 3.927 14 H 0.084 0.916 15 N -0.508 5.508 16 C 0.014 3.986 17 C 0.044 3.956 18 C 0.453 3.547 19 O -0.558 6.558 20 N -0.592 5.592 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.119 3.881 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.019 0.981 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.102 0.898 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.230 -4.604 8.268 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 H 0.136 0.864 4 C -0.185 4.185 5 C -0.213 4.213 6 H 0.141 0.859 7 C 0.332 3.668 8 O -0.413 6.413 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.168 4.168 12 C -0.198 4.198 13 C -0.037 4.037 14 H 0.102 0.898 15 N -0.231 5.231 16 C -0.133 4.133 17 C -0.087 4.087 18 C 0.239 3.761 19 O -0.439 6.439 20 N -0.232 5.232 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.003 4.003 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.120 0.880 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.573 -2.887 7.777 29.753 hybrid contribution 0.063 -2.338 0.796 2.471 sum -28.511 -5.225 8.573 30.227 Atomic orbital electron populations 1.21399 0.92197 1.02233 1.02205 1.22401 0.95211 0.95194 1.01342 0.86432 1.23106 1.03223 1.01569 0.90635 1.22324 0.97848 1.05293 0.95854 0.85891 1.19665 0.84686 0.84415 0.77990 1.90712 1.68477 1.20895 1.61256 1.47997 1.23731 1.10194 1.52154 1.21797 0.96921 0.81044 1.01895 1.21851 0.95345 0.99026 1.00579 1.22301 0.97785 0.98748 1.00957 1.22090 0.89720 0.92852 0.99011 0.89778 1.61713 1.03629 1.54030 1.03734 1.22667 1.04022 0.98134 0.88527 1.21895 0.91567 0.94905 1.00350 1.19633 0.84315 0.85837 0.86321 1.90530 1.85763 1.30454 1.37168 1.42209 1.07737 1.31792 1.41415 1.19425 0.82516 1.17464 1.23778 0.86258 1.25035 0.95097 0.98184 0.97911 1.69619 0.98713 1.41053 1.42801 0.86678 0.78442 0.82913 0.81392 1.19710 1.20183 1.19505 1.21663 0.81598 1.00797 0.96281 0.92379 0.91609 0.91949 0.87777 0.88200 0.89500 0.91296 0.91314 0.90632 0.91139 0.91201 0.96217 0.91869 0.88379 0.93168 0.89386 0.79787 0.91645 0.88005 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 2 C -0.12 -0.95 5.92 -90.61 -0.54 -1.49 16 3 H 0.12 1.15 7.67 -51.93 -0.40 0.75 16 4 C -0.15 -1.02 9.88 -26.72 -0.26 -1.28 16 5 C -0.19 -1.54 4.69 -91.77 -0.43 -1.97 16 6 H 0.12 0.71 6.81 -51.93 -0.35 0.36 16 7 C 0.54 6.41 7.48 -10.99 -0.08 6.32 16 8 O -0.54 -8.57 15.67 5.56 0.09 -8.49 16 9 N -0.61 -6.31 2.97 -172.73 -0.51 -6.83 16 10 C 0.11 0.74 6.30 -3.71 -0.02 0.72 16 11 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 12 C -0.16 -1.53 4.46 -26.69 -0.12 -1.65 16 13 C 0.07 0.91 2.38 -67.56 -0.16 0.74 16 14 H 0.08 1.10 8.03 -51.93 -0.42 0.68 16 15 N -0.51 -8.09 4.49 -236.15 -1.06 -9.15 16 16 C 0.01 0.21 8.41 60.06 0.51 0.72 16 17 C 0.04 0.74 4.89 -4.98 -0.02 0.72 16 18 C 0.45 10.30 7.51 -10.98 -0.08 10.22 16 19 O -0.56 -14.88 13.88 5.55 0.08 -14.80 16 20 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 21 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.86 13.96 55.50 0.77 -25.09 16 25 Si 0.88 19.40 27.73 -169.99 -4.71 14.68 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 C 0.12 1.47 5.66 -3.68 -0.02 1.45 16 30 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.49 8.05 -51.93 -0.42 0.08 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.44 5.67 -51.93 -0.29 0.14 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 40 H 0.07 0.70 6.69 -51.93 -0.35 0.35 16 41 H 0.02 0.26 6.54 -51.93 -0.34 -0.08 16 42 H 0.06 0.85 6.02 -51.93 -0.31 0.54 16 43 H 0.10 1.88 5.88 -51.93 -0.31 1.57 16 44 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 45 H 0.09 1.33 8.00 -51.93 -0.42 0.91 16 46 H 0.37 7.74 5.77 -40.82 -0.24 7.50 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.10 1.55 7.00 -51.93 -0.36 1.18 16 49 H 0.07 0.86 6.10 -51.93 -0.32 0.54 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -34.38 378.17 -8.69 -43.07 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -7.72 Total: 9.67 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.27 Total: 5.40 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.85 Total: -55.24 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.16 Total: -23.29 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.38 -8.69 -43.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752994593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.420 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds