Wall clock time and date at job start Tue Mar 31 2020 14:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.34704 * 2 1 4 4 O 1.44324 * 110.39014 * 122.29710 * 2 1 3 5 Xx 1.43470 * 104.65916 * 142.48331 * 4 2 1 6 5 C 1.57002 * 127.55342 * 140.39201 * 5 4 2 7 6 C 1.32809 * 119.99898 * 179.97438 * 6 5 4 8 7 C 1.50699 * 120.00126 * 179.97438 * 7 6 5 9 8 O 1.42902 * 109.47027 * 135.00072 * 8 7 6 10 9 C 1.42904 * 113.99828 * 180.02562 * 9 8 7 11 10 C 1.53514 * 114.16878 * 209.99943 * 10 9 8 12 11 N 1.47482 * 87.93039 * 220.33055 * 11 10 9 13 12 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 13 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 14 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 15 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 16 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 17 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 18 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 19 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 20 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 21 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 23 22 O 1.43468 * 104.88746 * 320.64943 * 5 4 2 24 23 C 1.43958 * 104.84857 * 39.29981 * 23 5 4 25 24 C 1.53002 * 110.52665 * 217.70229 * 24 23 5 26 25 C 1.53001 * 110.31704 * 95.38866 * 24 23 5 27 26 H 1.09002 * 109.47022 * 299.15539 * 1 2 3 28 27 H 1.09001 * 109.47293 * 59.16005 * 1 2 3 29 28 H 1.09006 * 109.47162 * 179.15655 * 1 2 3 30 29 H 1.09003 * 109.46823 * 180.84215 * 3 2 1 31 30 H 1.08997 * 109.47087 * 300.84035 * 3 2 1 32 31 H 1.08993 * 109.47561 * 60.84818 * 3 2 1 33 32 H 1.07999 * 119.99791 * 359.97438 * 6 5 4 34 33 H 1.08001 * 120.00044 * 0.02562 * 7 6 5 35 34 H 1.09005 * 109.46925 * 15.00521 * 8 7 6 36 35 H 1.08995 * 109.47321 * 255.00364 * 8 7 6 37 36 H 1.08997 * 113.25708 * 342.95284 * 10 9 8 38 37 H 1.08994 * 113.47382 * 105.55899 * 11 10 9 39 38 H 1.09001 * 113.53015 * 335.10309 * 11 10 9 40 39 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 41 40 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 42 41 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 43 42 H 1.08999 * 113.47664 * 87.75895 * 22 12 11 44 43 H 1.08994 * 113.47488 * 218.22090 * 22 12 11 45 44 H 1.09000 * 109.46824 * 175.40074 * 25 24 23 46 45 H 1.08994 * 109.47524 * 295.40273 * 25 24 23 47 46 H 1.09007 * 109.47198 * 55.40608 * 25 24 23 48 47 H 1.09000 * 109.46635 * 304.72000 * 26 24 23 49 48 H 1.08994 * 109.47039 * 64.71532 * 26 24 23 50 49 H 1.08994 * 109.46855 * 184.72338 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 8 2.0328 -0.7228 1.1435 5 6 4.5597 -1.6289 1.3944 6 6 5.5390 -2.2984 0.7972 7 6 6.8528 -2.5040 1.5064 8 8 7.2712 -3.8614 1.3498 9 6 8.5131 -4.1641 1.9887 10 6 9.3222 -5.2707 1.2976 11 7 9.6619 -5.7851 2.6374 12 6 9.6000 -7.2525 2.6691 13 6 10.1846 -7.7520 3.9651 14 1 10.5638 -7.0497 4.6927 15 6 10.2343 -9.1057 4.2225 16 7 10.7440 -9.5415 5.3538 17 14 9.5777 -10.3203 2.9644 18 1 10.6690 -10.7091 2.0353 19 1 9.0679 -11.5282 3.6618 20 1 8.4746 -9.6896 2.1961 21 6 8.4020 -5.1923 3.1233 22 8 2.8274 -1.8611 -0.6585 23 6 2.0674 -0.7751 -1.2202 24 6 0.9089 -1.3110 -2.0638 25 6 2.9709 0.1235 -2.0670 26 1 -0.3633 0.5007 0.8975 27 1 -0.3634 0.5268 -0.8824 28 1 -0.3634 -1.0276 -0.0151 29 1 3.1518 1.4178 -0.0151 30 1 1.6944 1.9583 -0.8823 31 1 1.7190 1.9493 0.8974 32 1 4.7047 -1.2322 2.3884 33 1 5.3942 -2.6948 -0.1969 34 1 6.7322 -2.2810 2.5665 35 1 7.6043 -1.8405 1.0787 36 1 9.0946 -3.2775 2.2412 37 1 10.1839 -4.8974 0.7444 38 1 8.7099 -5.9561 0.7117 39 1 10.1697 -7.6584 1.8332 40 1 8.5614 -7.5740 2.5911 41 1 10.7794 -10.4939 5.5347 42 1 7.5433 -5.8564 3.0249 43 1 8.4840 -4.7526 4.1172 44 1 0.2982 -0.4784 -2.4129 45 1 1.3050 -1.8555 -2.9210 46 1 0.2981 -1.9809 -1.4585 47 1 3.8126 0.4640 -1.4638 48 1 3.3419 -0.4385 -2.9240 49 1 2.4020 0.9851 -2.4161 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222272876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:13 Heat of formation + Delta-G solvation = 109.763838 kcal Electronic energy + Delta-G solvation = -25179.289735 eV Core-core repulsion = 21423.932603 eV Total energy + Delta-G solvation = -3755.357132 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.201 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.53761 -37.26399 -36.49390 -36.06055 -32.65565 -31.64316 -31.02459 -28.69069 -27.76554 -27.44062 -26.88428 -26.23931 -24.77094 -24.33175 -23.06511 -20.49061 -20.44079 -19.60336 -18.55886 -17.52075 -16.68456 -16.19315 -16.08560 -15.69699 -14.84863 -14.73552 -14.38321 -14.23115 -13.94317 -13.81865 -13.39536 -13.22235 -13.00162 -12.81151 -12.43191 -12.11395 -11.87495 -11.78893 -11.75634 -11.64599 -11.52934 -11.16671 -11.10185 -11.06048 -10.93689 -10.84342 -10.82166 -10.73837 -10.24853 -9.64804 -9.54247 -9.43321 -9.41375 -9.29077 -9.25452 -8.36887 -6.81023 -6.66595 -5.94270 -5.47585 -4.07905 0.32801 1.66843 1.68476 1.92714 2.39412 2.49782 3.03280 3.49156 3.97578 4.14040 4.37458 4.67122 4.77195 4.85173 4.88702 5.15902 5.25170 5.33573 5.44466 5.47742 5.55779 5.61306 5.70603 5.83502 5.85163 5.96898 6.09098 6.29585 6.33914 6.35978 6.45516 6.58402 6.59287 6.59534 6.77798 6.79276 6.84563 6.90546 6.95604 7.04420 7.09491 7.20263 7.22835 7.38999 7.48391 7.55711 7.79680 7.93422 8.08821 9.03109 9.61636 Molecular weight = 312.20amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.001856 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.716522 B =15081.565304 C =15389.358827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.117 3.883 3 C -0.147 4.147 4 O -0.608 6.608 5 C 0.068 3.932 6 C -0.257 4.257 7 C 0.119 3.881 8 O -0.365 6.365 9 C 0.059 3.941 10 C -0.004 4.004 11 N -0.466 5.466 12 C 0.032 3.968 13 C -0.074 4.074 14 H 0.139 0.861 15 C -0.066 4.066 16 N -0.610 5.610 17 Si 0.930 3.070 18 H -0.242 1.242 19 H -0.249 1.249 20 H -0.236 1.236 21 C -0.022 4.022 22 O -0.594 6.594 23 C 0.117 3.883 24 C -0.130 4.130 25 C -0.147 4.147 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.332 0.668 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.048 0.952 47 H 0.045 0.955 48 H 0.029 0.971 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.064 -10.896 3.979 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.065 3.935 3 C -0.205 4.205 4 O -0.545 6.545 5 C 0.033 3.967 6 C -0.275 4.275 7 C 0.043 3.957 8 O -0.283 6.283 9 C -0.001 4.001 10 C -0.133 4.133 11 N -0.189 5.189 12 C -0.096 4.096 13 C -0.093 4.093 14 H 0.156 0.844 15 C -0.279 4.279 16 N -0.259 5.259 17 Si 0.748 3.252 18 H -0.165 1.165 19 H -0.172 1.172 20 H -0.158 1.158 21 C -0.151 4.151 22 O -0.530 6.530 23 C 0.064 3.936 24 C -0.188 4.188 25 C -0.205 4.205 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.146 0.854 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.735 -11.275 4.510 20.677 hybrid contribution -0.830 -0.391 -0.686 1.146 sum 15.905 -11.666 3.824 20.092 Atomic orbital electron populations 1.22156 0.98057 1.00237 0.98309 1.21411 0.89139 0.88751 0.94235 1.22353 1.00662 0.99527 0.97922 1.95005 1.61170 1.68321 1.29999 1.36071 0.82737 0.89076 0.88856 1.23132 0.92076 1.08533 1.03786 1.21513 0.93751 0.82334 0.98110 1.88062 1.36732 1.28899 1.74622 1.23663 0.86542 0.96750 0.93113 1.24204 0.99380 0.96977 0.92709 1.68827 1.32106 1.06652 1.11351 1.22053 1.00358 0.90696 0.96484 1.25081 0.93032 0.94666 0.96480 0.84355 1.26588 1.00004 1.01077 1.00201 1.69863 1.14581 1.22685 1.18744 0.85661 0.81667 0.78764 0.79154 1.16522 1.17220 1.15838 1.24610 0.91962 0.97838 1.00724 1.94949 1.70298 1.35700 1.52045 1.21389 0.90719 0.92527 0.88973 1.22159 0.98815 0.99226 0.98571 1.22364 1.00273 0.98756 0.99081 0.94735 0.94627 0.93249 0.93561 0.95104 0.95091 0.86334 0.85109 0.93489 0.92607 0.88078 0.88751 0.89909 0.88019 0.90054 0.85446 0.89865 0.89075 0.94508 0.94800 0.93252 0.93562 0.95191 0.95014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.78 37.16 0.29 -2.86 16 2 C 0.12 3.26 1.57 -89.98 -0.14 3.11 16 3 C -0.15 -3.56 7.79 37.16 0.29 -3.27 16 4 O -0.61 -19.84 14.24 -59.50 -0.85 -20.68 16 5 C 0.07 1.61 14.74 28.87 0.43 2.04 16 6 C -0.26 -5.36 9.86 -36.17 -0.36 -5.72 16 7 C 0.12 1.84 6.20 36.01 0.22 2.06 16 8 O -0.37 -5.51 10.38 -35.23 -0.37 -5.88 16 9 C 0.06 0.64 4.66 -26.20 -0.12 0.52 16 10 C 0.00 -0.04 7.52 -7.54 -0.06 -0.10 16 11 N -0.47 -4.27 6.32 -246.10 -1.55 -5.82 16 12 C 0.03 0.25 3.64 -4.97 -0.02 0.23 16 13 C -0.07 -0.61 9.94 -34.44 -0.34 -0.95 16 14 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 15 C -0.07 -0.54 5.47 -17.82 -0.10 -0.64 16 16 N -0.61 -5.65 13.96 55.43 0.77 -4.87 16 17 Si 0.93 6.35 27.47 -169.99 -4.67 1.68 16 18 H -0.24 -1.71 7.11 56.52 0.40 -1.31 16 19 H -0.25 -1.84 7.11 56.52 0.40 -1.44 16 20 H -0.24 -1.69 6.54 56.52 0.37 -1.32 16 21 C -0.02 -0.22 7.55 -7.54 -0.06 -0.28 16 22 O -0.59 -19.28 14.13 -59.50 -0.84 -20.12 16 23 C 0.12 3.24 1.56 -89.98 -0.14 3.10 16 24 C -0.13 -3.16 7.78 37.16 0.29 -2.87 16 25 C -0.15 -3.57 7.78 37.16 0.29 -3.29 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.74 7.00 -51.93 -0.36 0.38 16 28 H 0.05 1.22 6.61 -51.93 -0.34 0.88 16 29 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 30 H 0.03 0.65 7.01 -51.93 -0.36 0.29 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.12 2.43 7.93 -52.49 -0.42 2.01 16 33 H 0.13 3.09 8.06 -52.49 -0.42 2.66 16 34 H 0.05 0.65 7.88 -51.93 -0.41 0.24 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.97 7.88 -51.93 -0.41 0.56 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 39 H 0.10 0.65 7.51 -51.93 -0.39 0.26 16 40 H 0.08 0.63 6.36 -51.93 -0.33 0.30 16 41 H 0.33 2.40 8.31 -40.82 -0.34 2.07 16 42 H 0.08 0.87 7.42 -51.93 -0.39 0.49 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.77 6.90 -51.93 -0.36 0.41 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 1.22 6.72 -51.93 -0.35 0.87 16 47 H 0.05 1.14 6.73 -51.93 -0.35 0.79 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.03 0.67 6.91 -51.93 -0.36 0.32 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -36.22 399.86 -9.56 -45.78 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -8.55 Total: 12.80 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 0.47 Total: -8.91 kcal Atomic # 7 Polarization: -9.91 SS G_CDS: -0.78 Total: -10.70 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -2.05 Total: -46.68 kcal Atomic # 14 Polarization: 6.35 SS G_CDS: -4.67 Total: 1.68 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.22 -9.56 -45.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222272876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.543 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds