Wall clock time and date at job start Tue Mar 31 2020 14:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.34704 * 2 1 4 4 O 1.44324 * 110.39014 * 122.29710 * 2 1 3 5 Xx 1.43470 * 104.65916 * 142.48331 * 4 2 1 6 5 C 1.57002 * 127.55342 * 140.39201 * 5 4 2 7 6 C 1.32809 * 119.99898 * 179.97438 * 6 5 4 8 7 C 1.50699 * 120.00126 * 179.97438 * 7 6 5 9 8 O 1.42902 * 109.47027 * 135.00072 * 8 7 6 10 9 C 1.42904 * 113.99828 * 180.02562 * 9 8 7 11 10 C 1.53514 * 114.16878 * 209.99943 * 10 9 8 12 11 N 1.47482 * 87.93039 * 220.33055 * 11 10 9 13 12 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 13 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 14 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 15 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 16 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 17 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 18 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 19 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 20 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 21 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 23 22 O 1.43468 * 104.88746 * 320.64943 * 5 4 2 24 23 C 1.43958 * 104.84857 * 39.29981 * 23 5 4 25 24 C 1.53002 * 110.52665 * 217.70229 * 24 23 5 26 25 C 1.53001 * 110.31704 * 95.38866 * 24 23 5 27 26 H 1.09002 * 109.47022 * 299.15539 * 1 2 3 28 27 H 1.09001 * 109.47293 * 59.16005 * 1 2 3 29 28 H 1.09006 * 109.47162 * 179.15655 * 1 2 3 30 29 H 1.09003 * 109.46823 * 180.84215 * 3 2 1 31 30 H 1.08997 * 109.47087 * 300.84035 * 3 2 1 32 31 H 1.08993 * 109.47561 * 60.84818 * 3 2 1 33 32 H 1.07999 * 119.99791 * 359.97438 * 6 5 4 34 33 H 1.08001 * 120.00044 * 0.02562 * 7 6 5 35 34 H 1.09005 * 109.46925 * 15.00521 * 8 7 6 36 35 H 1.08995 * 109.47321 * 255.00364 * 8 7 6 37 36 H 1.08997 * 113.25708 * 342.95284 * 10 9 8 38 37 H 1.08994 * 113.47382 * 105.55899 * 11 10 9 39 38 H 1.09001 * 113.53015 * 335.10309 * 11 10 9 40 39 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 41 40 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 42 41 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 43 42 H 1.08999 * 113.47664 * 87.75895 * 22 12 11 44 43 H 1.08994 * 113.47488 * 218.22090 * 22 12 11 45 44 H 1.09000 * 109.46824 * 175.40074 * 25 24 23 46 45 H 1.08994 * 109.47524 * 295.40273 * 25 24 23 47 46 H 1.09007 * 109.47198 * 55.40608 * 25 24 23 48 47 H 1.09000 * 109.46635 * 304.72000 * 26 24 23 49 48 H 1.08994 * 109.47039 * 64.71532 * 26 24 23 50 49 H 1.08994 * 109.46855 * 184.72338 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 8 2.0328 -0.7228 1.1435 5 6 4.5597 -1.6289 1.3944 6 6 5.5390 -2.2984 0.7972 7 6 6.8528 -2.5040 1.5064 8 8 7.2712 -3.8614 1.3498 9 6 8.5131 -4.1641 1.9887 10 6 9.3222 -5.2707 1.2976 11 7 9.6619 -5.7851 2.6374 12 6 9.6000 -7.2525 2.6691 13 6 10.1846 -7.7520 3.9651 14 1 10.5638 -7.0497 4.6927 15 6 10.2343 -9.1057 4.2225 16 7 10.7440 -9.5415 5.3538 17 14 9.5777 -10.3203 2.9644 18 1 10.6690 -10.7091 2.0353 19 1 9.0679 -11.5282 3.6618 20 1 8.4746 -9.6896 2.1961 21 6 8.4020 -5.1923 3.1233 22 8 2.8274 -1.8611 -0.6585 23 6 2.0674 -0.7751 -1.2202 24 6 0.9089 -1.3110 -2.0638 25 6 2.9709 0.1235 -2.0670 26 1 -0.3633 0.5007 0.8975 27 1 -0.3634 0.5268 -0.8824 28 1 -0.3634 -1.0276 -0.0151 29 1 3.1518 1.4178 -0.0151 30 1 1.6944 1.9583 -0.8823 31 1 1.7190 1.9493 0.8974 32 1 4.7047 -1.2322 2.3884 33 1 5.3942 -2.6948 -0.1969 34 1 6.7322 -2.2810 2.5665 35 1 7.6043 -1.8405 1.0787 36 1 9.0946 -3.2775 2.2412 37 1 10.1839 -4.8974 0.7444 38 1 8.7099 -5.9561 0.7117 39 1 10.1697 -7.6584 1.8332 40 1 8.5614 -7.5740 2.5911 41 1 10.7794 -10.4939 5.5347 42 1 7.5433 -5.8564 3.0249 43 1 8.4840 -4.7526 4.1172 44 1 0.2982 -0.4784 -2.4129 45 1 1.3050 -1.8555 -2.9210 46 1 0.2981 -1.9809 -1.4585 47 1 3.8126 0.4640 -1.4638 48 1 3.3419 -0.4385 -2.9240 49 1 2.4020 0.9851 -2.4161 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222272876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:11 Heat of formation + Delta-G solvation = 78.976890 kcal Electronic energy + Delta-G solvation = -25180.624757 eV Core-core repulsion = 21423.932603 eV Total energy + Delta-G solvation = -3756.692154 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.201 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.31807 -38.43190 -38.17188 -36.76120 -34.40450 -32.69187 -32.61235 -30.35966 -29.57861 -28.60715 -28.26645 -26.97485 -26.26568 -26.15836 -23.82428 -22.27027 -21.32922 -20.52133 -20.16104 -18.39778 -17.88442 -17.51237 -16.94405 -16.60031 -16.04901 -15.85839 -15.64469 -15.62550 -15.16071 -14.78978 -14.77174 -14.46199 -13.91977 -13.78087 -13.67330 -13.57843 -13.48017 -13.03480 -12.86545 -12.82167 -12.73129 -12.67321 -12.61969 -12.58306 -12.24074 -12.10416 -12.06079 -11.81178 -11.65498 -11.43232 -11.26121 -10.97079 -10.80117 -10.33477 -10.09125 -9.92018 -8.45904 -8.31539 -7.90924 -7.48844 -4.71869 -1.50658 0.84647 1.10466 1.11766 1.39567 1.83470 1.91896 2.53188 3.03231 3.39244 3.68881 3.79588 3.86563 4.04039 4.04745 4.15734 4.23576 4.27978 4.39421 4.47700 4.50295 4.50601 4.52976 4.60307 4.66375 4.75044 4.79275 4.80857 4.84207 4.87174 4.91692 4.95426 4.98869 5.01539 5.02187 5.03443 5.12332 5.16402 5.16536 5.31180 5.32988 5.44647 5.54233 5.72963 5.89764 6.19911 6.26463 6.38605 6.98061 7.51699 8.13680 Molecular weight = 312.20amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.001856 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.716522 B =15081.565304 C =15389.358827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.100 3.900 3 C -0.132 4.132 4 O -0.779 6.779 5 C 0.165 3.835 6 C -0.192 4.192 7 C 0.135 3.865 8 O -0.390 6.390 9 C 0.057 3.943 10 C -0.004 4.004 11 N -0.467 5.467 12 C 0.029 3.971 13 C -0.072 4.072 14 H 0.131 0.869 15 C -0.072 4.072 16 N -0.637 5.637 17 Si 0.966 3.034 18 H -0.243 1.243 19 H -0.260 1.260 20 H -0.237 1.237 21 C -0.024 4.024 22 O -0.768 6.768 23 C 0.100 3.900 24 C -0.126 4.126 25 C -0.132 4.132 26 H 0.027 0.973 27 H 0.054 0.946 28 H 0.020 0.980 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.217 0.783 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.340 0.660 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.055 0.945 45 H 0.026 0.974 46 H 0.019 0.981 47 H 0.028 0.972 48 H 0.023 0.977 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.589 -11.620 6.278 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 C -0.190 4.190 4 O -0.721 6.721 5 C 0.135 3.865 6 C -0.210 4.210 7 C 0.059 3.941 8 O -0.309 6.309 9 C -0.001 4.001 10 C -0.133 4.133 11 N -0.190 5.190 12 C -0.098 4.098 13 C -0.091 4.091 14 H 0.148 0.852 15 C -0.284 4.284 16 N -0.286 5.286 17 Si 0.783 3.217 18 H -0.167 1.167 19 H -0.184 1.184 20 H -0.160 1.160 21 C -0.153 4.153 22 O -0.710 6.710 23 C 0.051 3.949 24 C -0.183 4.183 25 C -0.190 4.190 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.233 0.767 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.154 0.846 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.047 0.953 48 H 0.042 0.958 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 23.296 -11.983 6.812 27.069 hybrid contribution -1.683 -0.665 -0.945 2.041 sum 21.614 -12.648 5.867 25.720 Atomic orbital electron populations 1.22117 0.99253 0.98381 0.98604 1.21327 0.89516 0.89527 0.94596 1.22203 0.99283 0.99194 0.98331 1.94803 1.69325 1.71903 1.36074 1.34122 0.66593 0.97949 0.87848 1.23984 0.93269 1.00773 1.02949 1.21387 0.88416 0.84442 0.99806 1.88009 1.39321 1.27755 1.75794 1.23989 0.84725 0.98143 0.93260 1.24245 0.99708 0.96461 0.92838 1.68849 1.31634 1.07331 1.11233 1.22141 1.00797 0.90142 0.96742 1.25077 0.92939 0.94556 0.96535 0.85160 1.26852 0.99603 1.01536 1.00361 1.69860 1.15559 1.23585 1.19646 0.85150 0.81038 0.77501 0.77987 1.16681 1.18393 1.15983 1.24627 0.92020 0.97600 1.01066 1.94738 1.70488 1.40491 1.65272 1.21291 0.90968 0.92600 0.90045 1.22118 0.99153 0.99150 0.97909 1.22215 0.99630 0.98945 0.98181 0.95418 0.92682 0.96122 0.95152 0.93330 0.95588 0.76697 0.86365 0.88738 0.87474 0.85339 0.87205 0.90330 0.86349 0.89673 0.84608 0.90681 0.88009 0.92591 0.95500 0.96208 0.95332 0.95828 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 7.78 71.98 0.56 -6.37 16 2 C 0.10 6.12 1.57 -10.38 -0.02 6.10 16 3 C -0.13 -6.91 7.79 71.98 0.56 -6.34 16 4 O -0.78 -55.41 14.24 -125.77 -1.79 -57.20 16 5 C 0.17 6.68 14.74 66.64 0.98 7.66 16 6 C -0.19 -6.35 9.86 24.51 0.24 -6.11 16 7 C 0.14 2.58 6.20 71.24 0.44 3.03 16 8 O -0.39 -8.24 10.38 -148.98 -1.55 -9.79 16 9 C 0.06 0.78 4.66 30.94 0.14 0.93 16 10 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 11 N -0.47 -5.99 6.32 -932.90 -5.89 -11.89 16 12 C 0.03 0.33 3.64 85.56 0.31 0.65 16 13 C -0.07 -0.96 9.94 25.60 0.25 -0.70 16 14 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 15 C -0.07 -1.00 5.47 84.66 0.46 -0.54 16 16 N -0.64 -10.66 13.96 21.45 0.30 -10.36 16 17 Si 0.97 10.72 27.47 68.60 1.88 12.61 16 18 H -0.24 -2.77 7.11 99.48 0.71 -2.06 16 19 H -0.26 -3.36 7.11 99.48 0.71 -2.65 16 20 H -0.24 -2.65 6.54 99.48 0.65 -2.00 16 21 C -0.02 -0.33 7.55 83.58 0.63 0.30 16 22 O -0.77 -54.52 14.13 -125.77 -1.78 -56.30 16 23 C 0.10 6.17 1.56 -10.38 -0.02 6.15 16 24 C -0.13 -6.93 7.78 71.98 0.56 -6.37 16 25 C -0.13 -6.92 7.78 71.98 0.56 -6.36 16 26 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 2.60 7.00 -2.39 -0.02 2.58 16 28 H 0.02 1.16 6.61 -2.38 -0.02 1.14 16 29 H 0.03 1.56 6.62 -2.39 -0.02 1.54 16 30 H 0.05 2.21 7.01 -2.39 -0.02 2.19 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.22 6.15 7.93 -2.91 -0.02 6.12 16 33 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 34 H 0.09 1.24 7.88 -2.38 -0.02 1.22 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.13 1.18 7.88 -2.39 -0.02 1.16 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.08 7.91 -2.39 -0.02 1.06 16 39 H 0.12 0.99 7.51 -2.39 -0.02 0.97 16 40 H 0.09 0.96 6.36 -2.39 -0.02 0.94 16 41 H 0.34 4.45 8.31 -92.71 -0.77 3.68 16 42 H 0.07 1.17 7.42 -2.39 -0.02 1.15 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 2.65 6.90 -2.39 -0.02 2.64 16 45 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.02 1.11 6.72 -2.38 -0.02 1.10 16 47 H 0.03 1.48 6.73 -2.39 -0.02 1.46 16 48 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.05 2.29 6.91 -2.39 -0.02 2.27 16 Total: -1.00 -98.50 399.86 -1.67 -100.16 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.85 Total: 40.17 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 6.31 Total: -7.41 kcal Atomic # 7 Polarization: -16.66 SS G_CDS: -5.59 Total: -22.25 kcal Atomic # 8 Polarization: -118.17 SS G_CDS: -5.11 Total: -123.29 kcal Atomic # 14 Polarization: 10.72 SS G_CDS: 1.88 Total: 12.61 kcal Total: -98.50 -1.67 -100.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222272876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.139 kcal (2) G-P(sol) polarization free energy of solvation -98.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds