Wall clock time and date at job start Tue Mar 31 2020 14:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 N 1.46906 * 109.47378 * 119.99833 * 2 1 3 5 5 C 1.46894 * 110.99918 * 306.04793 * 4 2 1 6 6 C 1.46897 * 110.99838 * 70.00295 * 4 2 1 7 7 C 1.53001 * 109.47387 * 170.00078 * 6 4 2 8 8 H 1.08997 * 109.46717 * 64.99649 * 7 6 4 9 9 C 1.52989 * 109.47307 * 184.99960 * 7 6 4 10 10 N 1.46505 * 109.46667 * 305.00192 * 7 6 4 11 11 C 1.34781 * 119.99798 * 155.00110 * 10 7 6 12 12 O 1.21837 * 120.00092 * 359.97438 * 11 10 7 13 13 N 1.33831 * 119.99695 * 179.97438 * 11 10 7 14 14 C 1.32936 * 119.99569 * 179.97438 * 13 11 10 15 15 C 1.41203 * 126.38027 * 0.02562 * 14 13 11 16 16 C 1.34960 * 108.24377 * 179.97438 * 15 14 13 17 17 N 1.36451 * 108.94756 * 359.97438 * 16 15 14 18 18 C 1.46508 * 125.85076 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46789 * 84.97724 * 18 17 16 20 20 H 1.07996 * 120.00587 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99729 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00245 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47511 * 89.99343 * 23 21 19 25 25 H 1.48502 * 109.46956 * 209.99626 * 23 21 19 26 26 H 1.48506 * 109.46683 * 329.98948 * 23 21 19 27 27 N 1.37425 * 126.37534 * 179.70800 * 14 13 11 28 28 H 0.96998 * 126.36775 * 0.02562 * 27 14 13 29 29 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 31 31 H 1.08992 * 109.47715 * 60.00117 * 1 2 3 32 32 H 1.09000 * 109.47250 * 239.99959 * 2 1 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 299.99984 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 36 36 H 1.08998 * 109.47268 * 59.99826 * 5 4 2 37 37 H 1.09005 * 109.46972 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47631 * 299.99871 * 5 4 2 39 39 H 1.08998 * 109.46908 * 290.00241 * 6 4 2 40 40 H 1.09001 * 109.47085 * 50.00109 * 6 4 2 41 41 H 1.09003 * 109.47167 * 299.99709 * 9 7 6 42 42 H 1.08997 * 109.47486 * 60.00160 * 9 7 6 43 43 H 1.09007 * 109.47022 * 180.02562 * 9 7 6 44 44 H 0.96993 * 120.00194 * 334.99330 * 10 7 6 45 45 H 1.08000 * 125.87873 * 359.95466 * 15 14 13 46 46 H 1.07996 * 125.52502 * 179.97438 * 16 15 14 47 47 H 1.08996 * 109.46852 * 204.97491 * 18 17 16 48 48 H 1.08990 * 109.46979 * 324.97586 * 18 17 16 49 49 H 0.97001 * 120.00237 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4343 -0.1149 2.4166 6 6 1.7530 -2.1349 1.1203 7 6 2.4886 -2.8525 2.2539 8 1 2.0771 -2.5353 3.2120 9 6 2.3132 -4.3644 2.0989 10 7 3.9139 -2.5181 2.1997 11 6 4.6657 -2.5895 3.3161 12 8 4.1599 -2.9317 4.3703 13 7 5.9679 -2.2845 3.2665 14 6 6.7093 -2.3544 4.3677 15 6 6.2653 -2.7327 5.6536 16 6 7.3174 -2.6772 6.4971 17 7 8.4218 -2.2781 5.8022 18 6 9.7652 -2.0952 6.3574 19 6 10.4885 -3.4173 6.3680 20 1 9.9967 -4.3049 5.9985 21 6 11.7779 -3.4938 6.8503 22 7 12.3766 -2.4129 7.3007 23 14 12.6749 -5.1322 6.8628 24 1 13.4079 -5.3051 5.5830 25 1 13.6380 -5.1607 7.9927 26 1 11.6915 -6.2336 7.0228 27 7 8.0519 -2.0779 4.4652 28 1 8.6348 -1.7950 3.7434 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 0.3491 -0.2085 2.3777 37 1 1.8134 -0.6463 3.2896 38 1 1.7058 0.9385 2.4859 39 1 0.6815 -2.3118 1.2132 40 1 2.1026 -2.5169 0.1612 41 1 1.2527 -4.6132 2.1392 42 1 2.7246 -4.6816 1.1407 43 1 2.8369 -4.8756 2.9068 44 1 4.3165 -2.2454 1.3605 45 1 5.2572 -3.0171 5.9169 46 1 7.2896 -2.9109 7.5511 47 1 10.3179 -1.3835 5.7443 48 1 9.6887 -1.7148 7.3759 49 1 13.2839 -2.4666 7.6397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350183395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:12 Heat of formation + Delta-G solvation = 74.459540 kcal Electronic energy + Delta-G solvation = -27363.439582 eV Core-core repulsion = 23556.566642 eV Total energy + Delta-G solvation = -3806.872940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66422 -39.37612 -38.28647 -35.42378 -34.04687 -32.80469 -31.80228 -30.92916 -30.75480 -29.80418 -27.67194 -27.10041 -26.57208 -24.72266 -23.28221 -22.01148 -21.17589 -20.45824 -19.76568 -19.58169 -17.32226 -16.85694 -16.43406 -16.05717 -15.97909 -14.98576 -14.94912 -14.75003 -14.69971 -14.27238 -14.10451 -13.97003 -13.55390 -13.35856 -13.08104 -12.89793 -12.73952 -12.63097 -12.48186 -12.14550 -12.09841 -11.90941 -11.80506 -11.75206 -11.41264 -11.38869 -11.25102 -11.03444 -10.93704 -10.56726 -10.49838 -10.32415 -9.56490 -9.49157 -8.92358 -8.88151 -8.39219 -8.36884 -8.19655 -6.78492 -6.42436 -4.61021 1.90390 2.19713 3.08368 3.16168 3.20078 3.28147 3.65960 3.87671 4.10198 4.57367 4.60883 4.74528 4.81419 4.85549 4.90413 5.03581 5.10318 5.24235 5.35922 5.37337 5.38188 5.43390 5.45715 5.53659 5.63477 5.65765 5.70419 5.75709 5.88772 5.90485 5.99359 6.05849 6.10395 6.16205 6.32321 6.40670 6.61343 6.62730 6.84089 6.93601 6.98967 7.30710 7.43573 7.52340 7.56926 7.74368 7.98743 8.43817 8.52955 8.64562 9.09286 9.80412 10.56684 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.002170 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.428471 B =12899.598636 C =13347.258026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.075 3.925 3 C -0.143 4.143 4 N -0.526 5.526 5 C 0.018 3.982 6 C 0.046 3.954 7 C 0.165 3.835 8 H 0.081 0.919 9 C -0.162 4.162 10 N -0.709 5.709 11 C 0.687 3.313 12 O -0.638 6.638 13 N -0.711 5.711 14 C 0.487 3.513 15 C -0.333 4.333 16 C 0.159 3.841 17 N -0.348 5.348 18 C 0.256 3.744 19 C -0.556 4.556 20 H 0.069 0.931 21 C 0.069 3.931 22 N -0.887 5.887 23 Si 0.909 3.091 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.270 1.270 27 N -0.474 5.474 28 H 0.443 0.557 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.398 0.602 45 H 0.182 0.818 46 H 0.185 0.815 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.474 4.054 -10.663 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 C -0.201 4.201 4 N -0.249 5.249 5 C -0.130 4.130 6 C -0.082 4.082 7 C 0.058 3.942 8 H 0.099 0.901 9 C -0.221 4.221 10 N -0.362 5.362 11 C 0.386 3.614 12 O -0.521 6.521 13 N -0.475 5.475 14 C 0.233 3.767 15 C -0.366 4.366 16 C 0.014 3.986 17 N -0.135 5.135 18 C 0.139 3.861 19 C -0.594 4.594 20 H 0.088 0.912 21 C -0.136 4.136 22 N -0.524 5.524 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.194 1.194 27 N -0.197 5.197 28 H 0.290 0.710 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.232 0.768 45 H 0.199 0.801 46 H 0.202 0.798 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.527 4.271 -10.552 20.900 hybrid contribution -0.058 -0.896 -0.172 0.914 sum -17.585 3.376 -10.724 20.872 Atomic orbital electron populations 1.22492 0.97904 1.01863 1.02353 1.21727 0.92410 0.95769 0.93466 1.21823 1.02156 0.94754 1.01322 1.62153 1.58394 1.02361 1.02012 1.22481 0.96703 1.00732 0.93057 1.22469 0.98137 0.88074 0.99528 1.20626 0.81795 0.93246 0.98551 0.90077 1.22185 1.01170 0.96405 1.02377 1.44484 1.07628 1.73045 1.11057 1.16598 0.84510 0.77559 0.82689 1.90704 1.76377 1.55281 1.29768 1.68066 1.07070 1.45709 1.26705 1.18726 0.82125 0.84846 0.91028 1.22386 1.01912 1.20027 0.92312 1.22773 0.85003 0.92246 0.98533 1.47918 1.10951 1.59295 0.95297 1.19998 0.72276 0.98865 0.94921 1.21435 0.99294 0.94118 1.44599 0.91248 1.24959 0.96882 0.97667 0.94084 1.69899 1.14161 1.28195 1.40159 0.86300 0.79415 0.82697 0.78028 1.20236 1.20728 1.19447 1.44423 1.08107 1.65747 1.01402 0.71005 0.92730 0.92144 0.92254 0.90172 0.91642 0.92587 0.92683 0.95488 0.90910 0.91410 0.93726 0.90497 0.92520 0.92774 0.91598 0.76844 0.80080 0.79833 0.93187 0.91520 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 8.44 37.15 0.31 -1.04 16 2 C 0.07 0.63 2.92 -67.71 -0.20 0.43 16 3 C -0.14 -1.17 9.12 37.16 0.34 -0.83 16 4 N -0.53 -5.41 4.44 -234.90 -1.04 -6.45 16 5 C 0.02 0.19 8.58 60.06 0.52 0.71 16 6 C 0.05 0.45 4.09 -3.82 -0.02 0.44 16 7 C 0.16 2.10 2.36 -67.93 -0.16 1.94 16 8 H 0.08 1.20 6.14 -51.93 -0.32 0.88 16 9 C -0.16 -1.92 9.48 37.15 0.35 -1.56 16 10 N -0.71 -11.02 4.81 -58.88 -0.28 -11.30 16 11 C 0.69 13.61 8.44 -87.76 -0.74 12.87 16 12 O -0.64 -13.91 12.92 5.07 0.07 -13.84 16 13 N -0.71 -14.46 10.59 -15.79 -0.17 -14.63 16 14 C 0.49 9.76 8.07 -155.28 -1.25 8.51 16 15 C -0.33 -6.44 9.52 -39.62 -0.38 -6.81 16 16 C 0.16 2.79 11.45 -16.66 -0.19 2.60 16 17 N -0.35 -6.66 3.63 -62.24 -0.23 -6.89 16 18 C 0.26 5.45 6.19 -5.19 -0.03 5.42 16 19 C -0.56 -13.44 9.39 -34.44 -0.32 -13.77 16 20 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 21 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -22.80 13.29 55.43 0.74 -22.06 16 23 Si 0.91 19.52 29.54 -169.99 -5.02 14.50 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 27 N -0.47 -8.77 7.38 31.33 0.23 -8.54 16 28 H 0.44 7.29 8.96 -182.55 -1.64 5.66 16 29 H 0.05 0.39 6.91 -51.93 -0.36 0.03 16 30 H 0.06 0.46 6.33 -51.93 -0.33 0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.46 6.55 -51.93 -0.34 0.12 16 36 H 0.03 0.25 6.21 -51.93 -0.32 -0.08 16 37 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 38 H 0.07 0.69 6.47 -51.93 -0.34 0.36 16 39 H 0.04 0.39 7.06 -51.93 -0.37 0.03 16 40 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.40 5.85 8.70 -40.82 -0.36 5.50 16 45 H 0.18 3.69 5.77 -52.49 -0.30 3.38 16 46 H 0.18 2.57 8.06 -52.49 -0.42 2.15 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 49 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -29.03 392.11 -10.84 -39.86 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -9.17 Total: 12.93 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -1.87 Total: 10.51 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -0.75 Total: -69.87 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.07 Total: -13.84 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.03 -10.84 -39.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350183395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.323 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds