Wall clock time and date at job start Tue Mar 31 2020 14:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 N 1.46906 * 109.47378 * 119.99833 * 2 1 3 5 5 C 1.46894 * 110.99918 * 306.04793 * 4 2 1 6 6 C 1.46897 * 110.99838 * 70.00295 * 4 2 1 7 7 C 1.53001 * 109.47387 * 170.00078 * 6 4 2 8 8 H 1.08997 * 109.46717 * 64.99649 * 7 6 4 9 9 C 1.52989 * 109.47307 * 184.99960 * 7 6 4 10 10 N 1.46505 * 109.46667 * 305.00192 * 7 6 4 11 11 C 1.34781 * 119.99798 * 155.00110 * 10 7 6 12 12 O 1.21837 * 120.00092 * 359.97438 * 11 10 7 13 13 N 1.33831 * 119.99695 * 179.97438 * 11 10 7 14 14 C 1.32936 * 119.99569 * 179.97438 * 13 11 10 15 15 C 1.41203 * 126.38027 * 0.02562 * 14 13 11 16 16 C 1.34960 * 108.24377 * 179.97438 * 15 14 13 17 17 N 1.36451 * 108.94756 * 359.97438 * 16 15 14 18 18 C 1.46508 * 125.85076 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46789 * 84.97724 * 18 17 16 20 20 H 1.07996 * 120.00587 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99729 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00245 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47511 * 89.99343 * 23 21 19 25 25 H 1.48502 * 109.46956 * 209.99626 * 23 21 19 26 26 H 1.48506 * 109.46683 * 329.98948 * 23 21 19 27 27 N 1.37425 * 126.37534 * 179.70800 * 14 13 11 28 28 H 0.96998 * 126.36775 * 0.02562 * 27 14 13 29 29 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46998 * 299.99586 * 1 2 3 31 31 H 1.08992 * 109.47715 * 60.00117 * 1 2 3 32 32 H 1.09000 * 109.47250 * 239.99959 * 2 1 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 299.99984 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99892 * 3 2 1 36 36 H 1.08998 * 109.47268 * 59.99826 * 5 4 2 37 37 H 1.09005 * 109.46972 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47631 * 299.99871 * 5 4 2 39 39 H 1.08998 * 109.46908 * 290.00241 * 6 4 2 40 40 H 1.09001 * 109.47085 * 50.00109 * 6 4 2 41 41 H 1.09003 * 109.47167 * 299.99709 * 9 7 6 42 42 H 1.08997 * 109.47486 * 60.00160 * 9 7 6 43 43 H 1.09007 * 109.47022 * 180.02562 * 9 7 6 44 44 H 0.96993 * 120.00194 * 334.99330 * 10 7 6 45 45 H 1.08000 * 125.87873 * 359.95466 * 15 14 13 46 46 H 1.07996 * 125.52502 * 179.97438 * 16 15 14 47 47 H 1.08996 * 109.46852 * 204.97491 * 18 17 16 48 48 H 1.08990 * 109.46979 * 324.97586 * 18 17 16 49 49 H 0.97001 * 120.00237 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4343 -0.1149 2.4166 6 6 1.7530 -2.1349 1.1203 7 6 2.4886 -2.8525 2.2539 8 1 2.0771 -2.5353 3.2120 9 6 2.3132 -4.3644 2.0989 10 7 3.9139 -2.5181 2.1997 11 6 4.6657 -2.5895 3.3161 12 8 4.1599 -2.9317 4.3703 13 7 5.9679 -2.2845 3.2665 14 6 6.7093 -2.3544 4.3677 15 6 6.2653 -2.7327 5.6536 16 6 7.3174 -2.6772 6.4971 17 7 8.4218 -2.2781 5.8022 18 6 9.7652 -2.0952 6.3574 19 6 10.4885 -3.4173 6.3680 20 1 9.9967 -4.3049 5.9985 21 6 11.7779 -3.4938 6.8503 22 7 12.3766 -2.4129 7.3007 23 14 12.6749 -5.1322 6.8628 24 1 13.4079 -5.3051 5.5830 25 1 13.6380 -5.1607 7.9927 26 1 11.6915 -6.2336 7.0228 27 7 8.0519 -2.0779 4.4652 28 1 8.6348 -1.7950 3.7434 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6765 1.9563 0.8900 36 1 0.3491 -0.2085 2.3777 37 1 1.8134 -0.6463 3.2896 38 1 1.7058 0.9385 2.4859 39 1 0.6815 -2.3118 1.2132 40 1 2.1026 -2.5169 0.1612 41 1 1.2527 -4.6132 2.1392 42 1 2.7246 -4.6816 1.1407 43 1 2.8369 -4.8756 2.9068 44 1 4.3165 -2.2454 1.3605 45 1 5.2572 -3.0171 5.9169 46 1 7.2896 -2.9109 7.5511 47 1 10.3179 -1.3835 5.7443 48 1 9.6887 -1.7148 7.3759 49 1 13.2839 -2.4666 7.6397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350183395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:11 Heat of formation + Delta-G solvation = 55.089431 kcal Electronic energy + Delta-G solvation = -27364.279533 eV Core-core repulsion = 23556.566642 eV Total energy + Delta-G solvation = -3807.712891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.18729 -40.53236 -39.38430 -36.59987 -35.72654 -34.48540 -32.87225 -32.42726 -32.10949 -31.03347 -28.40299 -28.27649 -27.82161 -25.63849 -24.92624 -23.44035 -22.64080 -21.61687 -21.00421 -20.49918 -18.96439 -18.56628 -17.55396 -17.26717 -17.15167 -16.60893 -16.29180 -15.99705 -15.71409 -15.52468 -15.42451 -15.21532 -14.56791 -14.50871 -14.26484 -14.19837 -14.08502 -13.78312 -13.63292 -13.56490 -13.08022 -13.06352 -12.79495 -12.74016 -12.71675 -12.51755 -12.29835 -12.22294 -12.06144 -12.01472 -11.63005 -11.46009 -11.16083 -11.11312 -10.75842 -10.44145 -9.80548 -9.70209 -9.13355 -8.50403 -8.13741 -6.53779 0.39254 0.67783 1.38898 1.42902 1.51822 1.76105 2.31675 2.48164 2.94350 2.97524 3.14210 3.29358 3.84466 3.97717 4.02472 4.20350 4.24987 4.36877 4.38028 4.45607 4.46657 4.52367 4.56012 4.67594 4.74571 4.78503 4.81352 4.87389 4.89440 4.90947 5.00043 5.02406 5.05763 5.11146 5.19343 5.30969 5.34262 5.36351 5.42662 5.53910 5.73489 5.91184 6.07466 6.20470 6.21446 6.26389 6.42252 6.65162 7.02235 7.19450 7.20258 8.29275 8.68325 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.002170 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.428471 B =12899.598636 C =13347.258026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 C -0.141 4.141 4 N -0.543 5.543 5 C 0.025 3.975 6 C 0.057 3.943 7 C 0.163 3.837 8 H 0.057 0.943 9 C -0.155 4.155 10 N -0.696 5.696 11 C 0.674 3.326 12 O -0.665 6.665 13 N -0.722 5.722 14 C 0.472 3.528 15 C -0.346 4.346 16 C 0.174 3.826 17 N -0.353 5.353 18 C 0.269 3.731 19 C -0.564 4.564 20 H 0.059 0.941 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.964 3.036 24 H -0.277 1.277 25 H -0.277 1.277 26 H -0.270 1.270 27 N -0.469 5.469 28 H 0.450 0.550 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.032 0.968 44 H 0.403 0.597 45 H 0.171 0.829 46 H 0.221 0.779 47 H 0.042 0.958 48 H 0.070 0.930 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.367 3.694 -11.732 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.033 4.033 3 C -0.198 4.198 4 N -0.267 5.267 5 C -0.123 4.123 6 C -0.072 4.072 7 C 0.057 3.943 8 H 0.076 0.924 9 C -0.214 4.214 10 N -0.348 5.348 11 C 0.373 3.627 12 O -0.550 6.550 13 N -0.487 5.487 14 C 0.218 3.782 15 C -0.379 4.379 16 C 0.030 3.970 17 N -0.139 5.139 18 C 0.152 3.848 19 C -0.603 4.603 20 H 0.077 0.923 21 C -0.174 4.174 22 N -0.551 5.551 23 Si 0.789 3.211 24 H -0.202 1.202 25 H -0.202 1.202 26 H -0.195 1.195 27 N -0.194 5.194 28 H 0.298 0.702 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.237 0.763 45 H 0.188 0.812 46 H 0.237 0.763 47 H 0.060 0.940 48 H 0.088 0.912 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.446 3.919 -11.664 22.173 hybrid contribution 0.171 -0.752 0.129 0.782 sum -18.275 3.166 -11.535 21.841 Atomic orbital electron populations 1.22422 0.96674 1.02177 1.02720 1.21778 0.93363 0.95536 0.92645 1.21804 1.01134 0.94968 1.01906 1.62119 1.59194 1.02766 1.02587 1.22355 0.97448 1.00173 0.92326 1.22375 0.98594 0.87576 0.98633 1.20800 0.80244 0.94395 0.98902 0.92446 1.22104 1.02557 0.95085 1.01643 1.44490 1.08509 1.71828 1.10009 1.16913 0.84642 0.77697 0.83426 1.90679 1.76766 1.56599 1.30965 1.68123 1.07445 1.46117 1.26989 1.18944 0.82608 0.85195 0.91487 1.22275 1.01953 1.21067 0.92581 1.23293 0.83638 0.90252 0.99781 1.47792 1.10754 1.59657 0.95680 1.19697 0.72778 0.97411 0.94946 1.21621 0.99641 0.94809 1.44185 0.92313 1.25610 0.97609 1.00239 0.93904 1.69962 1.14541 1.29617 1.40986 0.85453 0.78313 0.79400 0.77948 1.20231 1.20239 1.19501 1.44393 1.07801 1.65690 1.01467 0.70151 0.92408 0.92600 0.91064 0.89478 0.93173 0.90950 0.93159 0.94028 0.93675 0.91551 0.91954 0.88979 0.89895 0.91492 0.94919 0.76268 0.81161 0.76276 0.93973 0.91203 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.44 71.98 0.61 -1.55 16 2 C 0.07 1.11 2.92 44.91 0.13 1.24 16 3 C -0.14 -2.11 9.12 71.98 0.66 -1.46 16 4 N -0.54 -10.54 4.44 -897.07 -3.98 -14.52 16 5 C 0.03 0.52 8.58 127.69 1.10 1.61 16 6 C 0.06 1.00 4.09 86.30 0.35 1.35 16 7 C 0.16 4.09 2.36 44.99 0.11 4.19 16 8 H 0.06 1.74 6.14 -2.39 -0.01 1.73 16 9 C -0.15 -3.52 9.48 71.98 0.68 -2.84 16 10 N -0.70 -21.74 4.81 -458.34 -2.20 -23.94 16 11 C 0.67 27.30 8.44 179.35 1.51 28.82 16 12 O -0.66 -29.93 12.92 -4.79 -0.06 -29.99 16 13 N -0.72 -29.79 10.59 -322.55 -3.42 -33.21 16 14 C 0.47 19.09 8.07 133.95 1.08 20.17 16 15 C -0.35 -13.42 9.52 22.24 0.21 -13.20 16 16 C 0.17 5.94 11.45 83.22 0.95 6.89 16 17 N -0.35 -13.25 3.63 -350.84 -1.28 -14.52 16 18 C 0.27 11.27 6.19 85.63 0.53 11.80 16 19 C -0.56 -26.86 9.39 25.60 0.24 -26.62 16 20 H 0.06 2.89 7.81 -2.91 -0.02 2.87 16 21 C 0.03 1.39 5.46 84.66 0.46 1.85 16 22 N -0.91 -46.35 13.29 21.45 0.28 -46.07 16 23 Si 0.96 39.35 29.54 68.60 2.03 41.38 16 24 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 27 N -0.47 -17.32 7.38 -54.78 -0.40 -17.72 16 28 H 0.45 14.81 8.96 -213.28 -1.91 12.90 16 29 H 0.06 0.66 6.91 -2.38 -0.02 0.64 16 30 H 0.05 0.72 6.33 -2.39 -0.02 0.71 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 1.19 7.93 -2.39 -0.02 1.17 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.79 6.55 -2.39 -0.02 0.78 16 36 H 0.04 0.72 6.21 -2.39 -0.01 0.70 16 37 H 0.04 1.18 6.40 -2.38 -0.02 1.16 16 38 H 0.07 1.36 6.47 -2.39 -0.02 1.34 16 39 H 0.06 0.92 7.06 -2.39 -0.02 0.91 16 40 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.40 11.70 8.70 -92.71 -0.81 10.89 16 45 H 0.17 7.09 5.77 -2.91 -0.02 7.08 16 46 H 0.22 5.66 8.06 -2.91 -0.02 5.64 16 47 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 49 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -62.22 392.11 -2.15 -64.37 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -1.75 Total: 41.96 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 8.62 Total: 32.26 kcal Atomic # 7 Polarization: -138.98 SS G_CDS: -10.99 Total: -149.98 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.06 Total: -29.99 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -62.22 -2.15 -64.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350183395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.460 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds