Wall clock time and date at job start Tue Mar 31 2020 14:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46714 * 2 1 4 4 N 1.40507 * 127.03316 * 265.17181 * 3 2 1 5 5 H 0.96999 * 126.60337 * 0.02562 * 4 3 2 6 6 C 1.35085 * 106.79553 * 180.26185 * 4 3 2 7 7 C 1.50705 * 125.30167 * 179.74268 * 6 4 3 8 8 N 1.30726 * 109.40373 * 359.74711 * 6 4 3 9 9 C 1.34314 * 110.10115 * 359.97438 * 8 6 4 10 10 N 1.32761 * 126.11933 * 180.02562 * 9 8 6 11 11 C 1.33926 * 119.99793 * 0.02623 * 10 9 8 12 12 O 1.21823 * 119.99892 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99951 * 179.72638 * 11 10 9 14 14 C 1.46506 * 119.99880 * 0.27007 * 13 11 10 15 15 C 1.50699 * 109.46712 * 90.00210 * 14 13 11 16 16 H 1.07999 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99860 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00097 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99943 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47235 * 89.99154 * 19 17 15 21 21 H 1.48501 * 109.46710 * 209.99888 * 19 17 15 22 22 H 1.48501 * 109.46888 * 329.99266 * 19 17 15 23 23 C 1.46490 * 120.00004 * 180.27760 * 13 11 10 24 24 C 1.53000 * 109.47310 * 89.99675 * 23 13 11 25 25 C 1.53000 * 109.46878 * 180.02562 * 24 23 13 26 26 C 1.53010 * 109.46936 * 174.99916 * 25 24 23 27 27 C 1.53002 * 109.47468 * 294.99699 * 25 24 23 28 28 H 1.09000 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47325 * 299.99883 * 1 2 3 30 30 H 1.09004 * 109.47374 * 59.99870 * 1 2 3 31 31 H 1.08993 * 109.47051 * 240.00158 * 2 1 3 32 32 H 1.08999 * 109.47664 * 119.99760 * 2 1 3 33 33 H 1.09001 * 109.47320 * 269.97864 * 7 6 4 34 34 H 1.09003 * 109.46290 * 29.98004 * 7 6 4 35 35 H 1.08996 * 109.47159 * 149.97494 * 7 6 4 36 36 H 1.08994 * 109.46858 * 210.00206 * 14 13 11 37 37 H 1.08996 * 109.47200 * 330.00797 * 14 13 11 38 38 H 0.96997 * 119.99590 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.47111 * 209.99908 * 23 13 11 40 40 H 1.09005 * 109.47044 * 329.99690 * 23 13 11 41 41 H 1.08994 * 109.47070 * 299.99745 * 24 23 13 42 42 H 1.08996 * 109.47306 * 60.00001 * 24 23 13 43 43 H 1.08998 * 109.47599 * 54.99870 * 25 24 23 44 44 H 1.08999 * 109.47133 * 60.00137 * 26 25 24 45 45 H 1.09007 * 109.46926 * 179.97438 * 26 25 24 46 46 H 1.08995 * 109.47033 * 300.00091 * 26 25 24 47 47 H 1.08998 * 109.46850 * 300.00630 * 27 25 24 48 48 H 1.09005 * 109.46942 * 59.99910 * 27 25 24 49 49 H 1.08998 * 109.47435 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.3893 2.1477 -1.1177 5 1 2.3717 1.8641 -2.0451 6 6 2.7801 3.3538 -0.6516 7 6 3.2691 4.4989 -1.5006 8 7 2.6683 3.3732 0.6508 9 6 2.2033 2.1928 1.0917 10 7 1.9701 1.8671 2.3575 11 6 2.2003 2.7572 3.3313 12 8 2.6242 3.8655 3.0557 13 7 1.9584 2.4284 4.6158 14 6 1.4490 1.0953 4.9472 15 6 2.6066 0.1614 5.1898 16 1 3.6203 0.5245 5.1059 17 6 2.3716 -1.1566 5.5198 18 7 3.3818 -1.9715 5.7320 19 14 0.6184 -1.7846 5.6656 20 1 0.1632 -2.2925 4.3465 21 1 0.5676 -2.8831 6.6636 22 1 -0.2693 -0.6773 6.1027 23 6 2.2045 3.4040 5.6804 24 6 0.9376 4.2278 5.9201 25 6 1.1950 5.2472 7.0317 26 6 -0.0285 6.1529 7.1863 27 6 1.4547 4.5119 8.3480 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.3507 4.4289 -1.6171 34 1 2.7944 4.4529 -2.4808 35 1 3.0159 5.4429 -1.0183 36 1 0.8351 1.1541 5.8459 37 1 0.8470 0.7203 4.1196 38 1 3.2165 -2.8988 5.9638 39 1 2.4765 2.8807 6.5971 40 1 3.0182 4.0665 5.3851 41 1 0.6657 4.7512 5.0035 42 1 0.1239 3.5654 6.2154 43 1 2.0648 5.8521 6.7757 44 1 -0.8983 5.5480 7.4423 45 1 0.1547 6.8789 7.9785 46 1 -0.2135 6.6768 6.2485 47 1 0.5849 3.9070 8.6040 48 1 2.3263 3.8666 8.2379 49 1 1.6376 5.2381 9.1400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888532491.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:06 Heat of formation + Delta-G solvation = 89.468809 kcal Electronic energy + Delta-G solvation = -28595.362337 eV Core-core repulsion = 24789.140248 eV Total energy + Delta-G solvation = -3806.222089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93506 -38.71481 -36.48043 -35.23844 -34.48863 -33.51650 -32.13834 -31.44053 -30.75741 -29.00103 -28.11462 -27.06576 -26.78999 -23.93363 -23.04454 -22.23864 -21.45362 -20.87609 -19.55198 -18.63549 -17.63416 -16.67004 -16.29610 -15.98184 -15.69162 -15.16863 -14.78810 -14.51744 -14.16278 -14.00206 -13.82032 -13.71831 -13.54749 -13.29566 -12.93169 -12.73949 -12.52596 -12.27567 -12.16731 -12.11153 -11.93041 -11.57802 -11.41507 -11.33001 -11.02597 -10.76608 -10.61481 -10.50956 -10.33296 -10.27139 -10.19932 -10.01095 -9.92396 -9.86168 -9.65895 -9.24541 -8.44156 -8.08252 -7.57225 -7.03788 -5.91390 -3.85996 1.24679 1.29494 3.11770 3.36807 3.43082 3.47646 3.57374 4.14625 4.27380 4.53607 4.69548 4.73940 4.92393 5.06519 5.14622 5.22350 5.23867 5.28522 5.31953 5.36878 5.41801 5.50116 5.57666 5.65034 5.79011 5.85223 5.89342 6.01738 6.06482 6.11725 6.16774 6.19050 6.21238 6.30099 6.42201 6.54761 6.57490 6.72735 6.88958 6.92396 6.96974 7.21925 7.36393 7.84046 7.93387 8.05169 8.42936 8.68873 8.98950 9.17319 9.70115 10.01641 11.22759 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.008107 B = 0.005252 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.136181 B = 5329.788098 C = 7881.697555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.148 3.852 3 N -0.419 5.419 4 N -0.507 5.507 5 H 0.442 0.558 6 C 0.367 3.633 7 C -0.081 4.081 8 N -0.517 5.517 9 C 0.600 3.400 10 N -0.614 5.614 11 C 0.682 3.318 12 O -0.608 6.608 13 N -0.587 5.587 14 C 0.223 3.777 15 C -0.509 4.509 16 H 0.071 0.929 17 C 0.068 3.932 18 N -0.906 5.906 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.266 1.266 23 C 0.136 3.864 24 C -0.127 4.127 25 C -0.093 4.093 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.019 0.981 37 H 0.038 0.962 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 9.764 -15.602 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 N -0.228 5.228 4 N -0.235 5.235 5 H 0.289 0.711 6 C 0.090 3.910 7 C -0.141 4.141 8 N -0.252 5.252 9 C 0.238 3.762 10 N -0.373 5.373 11 C 0.382 3.618 12 O -0.487 6.487 13 N -0.319 5.319 14 C 0.102 3.898 15 C -0.548 4.548 16 H 0.089 0.911 17 C -0.132 4.132 18 N -0.546 5.546 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.191 1.191 23 C 0.012 3.988 24 C -0.166 4.166 25 C -0.112 4.112 26 C -0.201 4.201 27 C -0.207 4.207 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.467 9.822 -14.528 18.369 hybrid contribution -0.838 -1.025 -1.002 1.661 sum -6.306 8.796 -15.530 18.929 Atomic orbital electron populations 1.22230 0.94785 1.03051 1.02949 1.21782 0.94895 0.75651 1.04909 1.47818 1.65999 1.11527 0.97431 1.44984 1.64188 1.10845 1.03500 0.71084 1.24306 0.88938 0.85352 0.92376 1.20565 1.02591 0.93624 0.97277 1.72184 1.25423 1.21537 1.06023 1.20474 0.86252 0.81207 0.88231 1.68828 1.38632 1.36027 0.93847 1.16528 0.78502 0.83557 0.83255 1.90894 1.50411 1.24128 1.83314 1.46803 1.66631 1.14968 1.03464 1.19549 0.95101 0.79656 0.95520 1.21460 0.94057 0.93779 1.45500 0.91055 1.24839 0.96512 0.96623 0.95237 1.69928 1.30342 1.05227 1.49119 0.86890 0.86131 0.78820 0.78063 1.20215 1.21518 1.19067 1.21192 0.96406 0.90821 0.90399 1.22018 0.99262 0.97403 0.97902 1.21048 0.98217 0.96550 0.95430 1.21819 0.98076 0.99138 1.01052 1.21905 1.02230 1.00119 0.96414 0.90418 0.90797 0.92998 0.90039 0.86477 0.88289 0.89698 0.87520 0.96300 0.94373 0.93002 0.90609 0.91263 0.92117 0.92268 0.91272 0.92974 0.93170 0.92987 0.92793 0.91915 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.53 16 2 C 0.15 1.80 7.20 -4.04 -0.03 1.77 16 3 N -0.42 -6.10 3.73 -62.10 -0.23 -6.33 16 4 N -0.51 -4.96 7.36 32.72 0.24 -4.72 16 5 H 0.44 2.08 8.96 -182.29 -1.63 0.45 16 6 C 0.37 4.34 8.17 -155.19 -1.27 3.07 16 7 C -0.08 -0.48 10.51 36.01 0.38 -0.11 16 8 N -0.52 -9.77 9.19 -11.08 -0.10 -9.87 16 9 C 0.60 12.21 8.40 -321.69 -2.70 9.50 16 10 N -0.61 -14.94 9.13 -17.55 -0.16 -15.10 16 11 C 0.68 17.83 8.19 -87.68 -0.72 17.12 16 12 O -0.61 -16.54 14.45 5.08 0.07 -16.47 16 13 N -0.59 -14.77 2.46 -181.01 -0.44 -15.21 16 14 C 0.22 5.89 4.21 -5.19 -0.02 5.86 16 15 C -0.51 -15.23 9.94 -34.44 -0.34 -15.57 16 16 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 19 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 23 C 0.14 2.95 5.16 -4.05 -0.02 2.93 16 24 C -0.13 -2.33 5.01 -26.73 -0.13 -2.46 16 25 C -0.09 -1.39 2.92 -90.61 -0.26 -1.66 16 26 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 27 C -0.15 -2.11 8.95 37.16 0.33 -1.78 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.49 7.13 -51.93 -0.37 0.12 16 37 H 0.04 1.02 6.73 -51.93 -0.35 0.67 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 1.62 6.50 -51.93 -0.34 1.28 16 40 H 0.07 1.55 7.42 -51.93 -0.39 1.16 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.95 6.57 -51.93 -0.34 0.60 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -41.80 401.99 -12.40 -54.19 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -9.77 Total: 0.35 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: -4.16 Total: 17.57 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: 0.08 Total: -78.89 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.07 Total: -16.47 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -41.80 -12.40 -54.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888532491.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.663 kcal (2) G-P(sol) polarization free energy of solvation -41.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds