Wall clock time and date at job start Tue Mar 31 2020 14:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46714 * 2 1 4 4 N 1.40507 * 127.03316 * 265.17181 * 3 2 1 5 5 H 0.96999 * 126.60337 * 0.02562 * 4 3 2 6 6 C 1.35085 * 106.79553 * 180.26185 * 4 3 2 7 7 C 1.50705 * 125.30167 * 179.74268 * 6 4 3 8 8 N 1.30726 * 109.40373 * 359.74711 * 6 4 3 9 9 C 1.34314 * 110.10115 * 359.97438 * 8 6 4 10 10 N 1.32761 * 126.11933 * 180.02562 * 9 8 6 11 11 C 1.33926 * 119.99793 * 0.02623 * 10 9 8 12 12 O 1.21823 * 119.99892 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99951 * 179.72638 * 11 10 9 14 14 C 1.46506 * 119.99880 * 0.27007 * 13 11 10 15 15 C 1.50699 * 109.46712 * 90.00210 * 14 13 11 16 16 H 1.07999 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99860 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00097 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99943 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47235 * 89.99154 * 19 17 15 21 21 H 1.48501 * 109.46710 * 209.99888 * 19 17 15 22 22 H 1.48501 * 109.46888 * 329.99266 * 19 17 15 23 23 C 1.46490 * 120.00004 * 180.27760 * 13 11 10 24 24 C 1.53000 * 109.47310 * 89.99675 * 23 13 11 25 25 C 1.53000 * 109.46878 * 180.02562 * 24 23 13 26 26 C 1.53010 * 109.46936 * 174.99916 * 25 24 23 27 27 C 1.53002 * 109.47468 * 294.99699 * 25 24 23 28 28 H 1.09000 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47325 * 299.99883 * 1 2 3 30 30 H 1.09004 * 109.47374 * 59.99870 * 1 2 3 31 31 H 1.08993 * 109.47051 * 240.00158 * 2 1 3 32 32 H 1.08999 * 109.47664 * 119.99760 * 2 1 3 33 33 H 1.09001 * 109.47320 * 269.97864 * 7 6 4 34 34 H 1.09003 * 109.46290 * 29.98004 * 7 6 4 35 35 H 1.08996 * 109.47159 * 149.97494 * 7 6 4 36 36 H 1.08994 * 109.46858 * 210.00206 * 14 13 11 37 37 H 1.08996 * 109.47200 * 330.00797 * 14 13 11 38 38 H 0.96997 * 119.99590 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.47111 * 209.99908 * 23 13 11 40 40 H 1.09005 * 109.47044 * 329.99690 * 23 13 11 41 41 H 1.08994 * 109.47070 * 299.99745 * 24 23 13 42 42 H 1.08996 * 109.47306 * 60.00001 * 24 23 13 43 43 H 1.08998 * 109.47599 * 54.99870 * 25 24 23 44 44 H 1.08999 * 109.47133 * 60.00137 * 26 25 24 45 45 H 1.09007 * 109.46926 * 179.97438 * 26 25 24 46 46 H 1.08995 * 109.47033 * 300.00091 * 26 25 24 47 47 H 1.08998 * 109.46850 * 300.00630 * 27 25 24 48 48 H 1.09005 * 109.46942 * 59.99910 * 27 25 24 49 49 H 1.08998 * 109.47435 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.3893 2.1477 -1.1177 5 1 2.3717 1.8641 -2.0451 6 6 2.7801 3.3538 -0.6516 7 6 3.2691 4.4989 -1.5006 8 7 2.6683 3.3732 0.6508 9 6 2.2033 2.1928 1.0917 10 7 1.9701 1.8671 2.3575 11 6 2.2003 2.7572 3.3313 12 8 2.6242 3.8655 3.0557 13 7 1.9584 2.4284 4.6158 14 6 1.4490 1.0953 4.9472 15 6 2.6066 0.1614 5.1898 16 1 3.6203 0.5245 5.1059 17 6 2.3716 -1.1566 5.5198 18 7 3.3818 -1.9715 5.7320 19 14 0.6184 -1.7846 5.6656 20 1 0.1632 -2.2925 4.3465 21 1 0.5676 -2.8831 6.6636 22 1 -0.2693 -0.6773 6.1027 23 6 2.2045 3.4040 5.6804 24 6 0.9376 4.2278 5.9201 25 6 1.1950 5.2472 7.0317 26 6 -0.0285 6.1529 7.1863 27 6 1.4547 4.5119 8.3480 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.3507 4.4289 -1.6171 34 1 2.7944 4.4529 -2.4808 35 1 3.0159 5.4429 -1.0183 36 1 0.8351 1.1541 5.8459 37 1 0.8470 0.7203 4.1196 38 1 3.2165 -2.8988 5.9638 39 1 2.4765 2.8807 6.5971 40 1 3.0182 4.0665 5.3851 41 1 0.6657 4.7512 5.0035 42 1 0.1239 3.5654 6.2154 43 1 2.0648 5.8521 6.7757 44 1 -0.8983 5.5480 7.4423 45 1 0.1547 6.8789 7.9785 46 1 -0.2135 6.6768 6.2485 47 1 0.5849 3.9070 8.6040 48 1 2.3263 3.8666 8.2379 49 1 1.6376 5.2381 9.1400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888532491.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:05 Heat of formation + Delta-G solvation = 61.265730 kcal Electronic energy + Delta-G solvation = -28596.585314 eV Core-core repulsion = 24789.140248 eV Total energy + Delta-G solvation = -3807.445067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.15923 -40.51361 -37.92668 -36.32191 -36.21259 -35.09717 -34.33368 -32.46207 -32.00379 -30.72453 -29.14967 -28.83194 -27.97149 -25.27029 -24.47599 -24.21600 -22.51492 -22.30433 -20.85367 -20.02232 -19.07161 -18.94952 -17.77265 -17.43577 -17.20918 -16.61979 -16.33350 -16.05603 -15.61908 -15.41836 -15.20541 -14.79695 -14.67365 -14.62430 -14.41291 -14.15836 -13.67458 -13.49773 -13.44655 -13.28019 -13.15688 -13.02250 -12.93583 -12.68310 -12.40534 -12.31515 -12.20813 -12.07554 -11.95095 -11.74799 -11.60436 -11.58263 -11.48189 -11.42944 -11.28533 -11.00835 -10.72680 -9.85629 -9.33363 -8.71862 -8.22947 -6.25580 0.03553 0.20981 1.37891 1.41094 1.52787 1.72030 2.32739 2.40071 2.74480 3.10764 3.22687 3.29196 3.76733 3.85824 3.94386 4.00588 4.05838 4.09271 4.19475 4.33562 4.39153 4.56644 4.59523 4.69380 4.71432 4.72729 4.76925 4.80183 4.85838 4.89836 4.95055 5.01719 5.05779 5.07331 5.10196 5.15865 5.20386 5.21675 5.33143 5.47262 5.49902 5.54697 5.58951 6.05930 6.33294 6.37420 6.64672 6.72026 6.90751 7.20524 7.37287 8.20630 8.95053 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.008107 B = 0.005252 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.136181 B = 5329.788098 C = 7881.697555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 N -0.413 5.413 4 N -0.467 5.467 5 H 0.471 0.529 6 C 0.384 3.616 7 C -0.078 4.078 8 N -0.587 5.587 9 C 0.588 3.412 10 N -0.668 5.668 11 C 0.673 3.327 12 O -0.638 6.638 13 N -0.600 5.600 14 C 0.243 3.757 15 C -0.518 4.518 16 H 0.012 0.988 17 C 0.014 3.986 18 N -0.951 5.951 19 Si 0.949 3.051 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.249 1.249 23 C 0.136 3.864 24 C -0.111 4.111 25 C -0.090 4.090 26 C -0.138 4.138 27 C -0.147 4.147 28 H 0.098 0.902 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.044 0.956 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 9.933 -18.368 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 N -0.218 5.218 4 N -0.197 5.197 5 H 0.325 0.675 6 C 0.110 3.890 7 C -0.137 4.137 8 N -0.325 5.325 9 C 0.225 3.775 10 N -0.432 5.432 11 C 0.372 3.628 12 O -0.520 6.520 13 N -0.333 5.333 14 C 0.121 3.879 15 C -0.557 4.557 16 H 0.031 0.969 17 C -0.183 4.183 18 N -0.593 5.593 19 Si 0.772 3.228 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.173 1.173 23 C 0.012 3.988 24 C -0.150 4.150 25 C -0.109 4.109 26 C -0.195 4.195 27 C -0.204 4.204 28 H 0.117 0.883 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.117 0.883 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.654 9.968 -17.474 21.524 hybrid contribution 0.029 -1.066 -0.478 1.168 sum -7.625 8.902 -17.952 21.440 Atomic orbital electron populations 1.22157 0.93596 1.04194 1.02146 1.22032 0.95825 0.74375 1.05644 1.48126 1.63859 1.12015 0.97813 1.45108 1.61383 1.09620 1.03555 0.67501 1.25393 0.85966 0.86652 0.91000 1.20935 1.04027 0.90501 0.98193 1.72091 1.28752 1.21845 1.09775 1.20677 0.85609 0.82654 0.88514 1.68732 1.42850 1.36284 0.95373 1.16857 0.78300 0.83713 0.83888 1.90819 1.52303 1.25205 1.83691 1.46912 1.67223 1.14979 1.04192 1.19211 0.93547 0.79724 0.95428 1.21486 0.92561 0.95228 1.46394 0.96936 1.25784 1.02047 0.96319 0.94137 1.70088 1.33384 1.05882 1.49903 0.85692 0.79471 0.78645 0.79003 1.18440 1.20456 1.17258 1.21288 0.97774 0.90371 0.89324 1.21869 0.97159 0.97498 0.98477 1.21042 0.99433 0.95992 0.94467 1.21768 0.96847 0.99069 1.01829 1.21881 1.01540 1.00412 0.96571 0.88297 0.94704 0.90547 0.84873 0.90208 0.86225 0.84649 0.88262 0.95293 0.94634 0.92488 0.90996 0.92976 0.93892 0.92257 0.91531 0.92491 0.90919 0.93177 0.92542 0.93687 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 10.24 71.98 0.74 -2.62 16 2 C 0.14 3.22 7.20 86.38 0.62 3.84 16 3 N -0.41 -11.64 3.73 -350.39 -1.31 -12.95 16 4 N -0.47 -7.62 7.36 -50.40 -0.37 -7.99 16 5 H 0.47 1.95 8.96 -213.06 -1.91 0.04 16 6 C 0.38 8.31 8.17 138.05 1.13 9.44 16 7 C -0.08 -0.64 10.51 71.24 0.75 0.11 16 8 N -0.59 -22.71 9.19 -188.97 -1.74 -24.44 16 9 C 0.59 24.83 8.40 261.09 2.19 27.02 16 10 N -0.67 -34.69 9.13 -328.09 -3.00 -37.69 16 11 C 0.67 37.87 8.19 179.32 1.47 39.34 16 12 O -0.64 -37.33 14.45 -4.74 -0.07 -37.39 16 13 N -0.60 -32.43 2.46 -844.77 -2.07 -34.51 16 14 C 0.24 13.43 4.21 85.63 0.36 13.79 16 15 C -0.52 -32.90 9.94 25.60 0.25 -32.64 16 16 H 0.01 0.90 8.06 -2.91 -0.02 0.88 16 17 C 0.01 0.84 5.47 84.66 0.46 1.31 16 18 N -0.95 -61.91 13.96 21.45 0.30 -61.61 16 19 Si 0.95 45.59 27.47 68.60 1.88 47.47 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 23 C 0.14 6.34 5.16 86.38 0.45 6.79 16 24 C -0.11 -4.26 5.01 30.59 0.15 -4.10 16 25 C -0.09 -2.70 2.92 -10.79 -0.03 -2.74 16 26 C -0.14 -3.35 9.19 71.99 0.66 -2.69 16 27 C -0.15 -4.09 8.95 71.98 0.64 -3.44 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.03 1.52 7.13 -2.39 -0.02 1.51 16 37 H 0.04 1.98 6.73 -2.39 -0.02 1.96 16 38 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 39 H 0.07 3.32 6.50 -2.38 -0.02 3.30 16 40 H 0.05 2.55 7.42 -2.38 -0.02 2.53 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.04 1.39 6.57 -2.38 -0.02 1.38 16 49 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -102.63 401.99 2.44 -100.18 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -1.03 Total: 15.52 kcal Atomic # 6 Polarization: 43.56 SS G_CDS: 9.85 Total: 53.41 kcal Atomic # 7 Polarization: -171.00 SS G_CDS: -8.19 Total: -179.19 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.07 Total: -37.39 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -102.63 2.44 -100.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888532491.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.450 kcal (2) G-P(sol) polarization free energy of solvation -102.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds