Wall clock time and date at job start Tue Mar 31 2020 14:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46868 * 2 1 4 4 C 1.36737 * 127.13725 * 275.52336 * 3 2 1 5 5 C 1.50698 * 126.34521 * 359.97438 * 4 3 2 6 6 C 1.52993 * 109.47047 * 270.01327 * 5 4 3 7 7 C 1.53001 * 109.47352 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47517 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99940 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00115 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00058 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00013 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46994 * 60.00090 * 12 10 8 14 14 H 1.48499 * 109.47032 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47420 * 300.00250 * 12 10 8 16 16 N 1.30291 * 107.30344 * 180.02562 * 4 3 2 17 17 N 1.28527 * 110.05636 * 0.02562 * 16 4 3 18 18 C 1.31214 * 109.86171 * 0.02562 * 17 16 4 19 19 N 1.38581 * 126.47664 * 179.73860 * 18 17 16 20 20 C 1.46894 * 111.00130 * 107.08673 * 19 18 17 21 21 C 1.46902 * 110.99594 * 343.13715 * 19 18 17 22 22 C 1.52999 * 109.47024 * 189.99804 * 21 19 18 23 23 N 1.46498 * 109.47376 * 179.97438 * 22 21 19 24 24 C 1.34777 * 120.00403 * 180.02562 * 23 22 21 25 25 C 1.50700 * 120.00549 * 180.02562 * 24 23 22 26 26 O 1.21286 * 119.99884 * 359.97438 * 24 23 22 27 27 H 1.08997 * 109.47300 * 66.17760 * 1 2 3 28 28 H 1.09001 * 109.47299 * 186.18442 * 1 2 3 29 29 H 1.09003 * 109.47257 * 306.17887 * 1 2 3 30 30 H 1.08994 * 109.47009 * 240.00152 * 2 1 3 31 31 H 1.08996 * 109.47241 * 119.99879 * 2 1 3 32 32 H 1.09001 * 109.47145 * 30.01807 * 5 4 3 33 33 H 1.09004 * 109.46705 * 150.01663 * 5 4 3 34 34 H 1.09001 * 109.47540 * 300.00239 * 6 5 4 35 35 H 1.09004 * 109.47093 * 60.00574 * 6 5 4 36 36 H 1.09001 * 109.46863 * 300.00494 * 7 6 5 37 37 H 1.08997 * 109.47231 * 59.99769 * 7 6 5 38 38 H 0.97002 * 120.00253 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.47157 * 65.72308 * 20 19 18 40 40 H 1.08998 * 109.47225 * 185.72317 * 20 19 18 41 41 H 1.09003 * 109.47636 * 305.72654 * 20 19 18 42 42 H 1.09000 * 109.47136 * 309.99668 * 21 19 18 43 43 H 1.08998 * 109.47409 * 70.00314 * 21 19 18 44 44 H 1.08998 * 109.47595 * 300.00440 * 22 21 19 45 45 H 1.09008 * 109.47290 * 60.00308 * 22 21 19 46 46 H 0.96998 * 120.00073 * 0.02562 * 23 22 21 47 47 H 1.09003 * 109.47248 * 89.99555 * 25 24 23 48 48 H 1.08993 * 109.47046 * 209.99890 * 25 24 23 49 49 H 1.09001 * 109.46544 * 329.99637 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1945 2.1946 -1.0850 5 6 1.9211 1.8368 -2.5231 6 6 3.1823 1.2374 -3.1481 7 6 2.9050 0.8747 -4.6085 8 6 4.1471 0.2837 -5.2239 9 1 5.0445 0.1769 -4.6326 10 6 4.1379 -0.1209 -6.5420 11 7 3.0450 0.0086 -7.2620 12 14 5.6778 -0.8528 -7.3051 13 1 6.0678 -2.0752 -6.5574 14 1 5.4085 -1.2049 -8.7224 15 1 6.7811 0.1391 -7.2420 16 7 2.6436 3.3357 -0.6450 17 7 2.7627 3.2989 0.6342 18 6 2.3935 2.1224 1.0826 19 7 2.3895 1.7090 2.4053 20 6 1.0189 1.6278 2.9274 21 6 3.2175 2.5937 3.2358 22 6 3.3928 1.9738 4.6235 23 7 4.2190 2.8557 5.4516 24 6 4.5086 2.5111 6.7220 25 6 5.3581 3.4186 7.5740 26 8 4.0847 1.4711 7.1799 27 1 -0.3634 0.4151 -0.9401 28 1 -0.3634 -1.0217 0.1107 29 1 -0.3634 0.6066 0.8295 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.1115 1.1084 -2.5687 33 1 1.6344 2.7336 -3.0724 34 1 3.9919 1.9658 -3.1025 35 1 3.4690 0.3405 -2.5989 36 1 2.0953 0.1464 -4.6544 37 1 2.6185 1.7716 -5.1575 38 1 3.0386 -0.2756 -8.1894 39 1 0.4764 0.8411 2.4030 40 1 1.0488 1.4003 3.9929 41 1 0.5142 2.5816 2.7735 42 1 4.1942 2.7211 2.7689 43 1 2.7305 3.5642 3.3303 44 1 2.4162 1.8462 5.0905 45 1 3.8799 1.0032 4.5291 46 1 4.5578 3.6876 5.0856 47 1 4.7178 4.1238 8.1039 48 1 5.9165 2.8220 8.2953 49 1 6.0544 3.9662 6.9389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339310713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:43 Heat of formation + Delta-G solvation = 32.587229 kcal Electronic energy + Delta-G solvation = -27134.880892 eV Core-core repulsion = 23326.192232 eV Total energy + Delta-G solvation = -3808.688660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.93799 -39.99426 -38.19509 -35.91297 -35.17544 -34.54889 -32.46806 -31.18917 -30.66508 -29.88574 -28.69283 -27.50166 -25.88726 -24.31071 -23.58938 -22.86658 -21.22680 -20.68103 -20.46780 -20.06567 -17.62391 -17.22212 -16.66820 -16.54937 -16.25074 -16.03549 -15.71317 -15.21122 -15.00247 -14.48806 -14.42078 -14.11359 -13.92908 -13.82252 -13.65720 -13.24466 -12.99660 -12.78947 -12.62745 -12.34815 -12.27963 -12.13370 -11.98826 -11.74275 -11.54786 -11.51827 -11.31948 -10.87686 -10.83595 -10.60617 -10.48393 -10.33434 -10.11991 -9.79494 -9.69595 -9.50689 -9.41311 -9.15515 -8.37374 -8.36027 -6.02666 -4.05002 1.80453 2.09884 2.24934 2.78478 2.94828 3.32311 3.36714 3.39632 3.55032 4.27620 4.42477 4.45107 4.48299 4.55842 4.59372 4.65782 4.76043 4.80015 4.92420 4.95027 5.01134 5.08561 5.12486 5.24988 5.26818 5.33366 5.35192 5.38406 5.44932 5.49630 5.65050 5.78014 5.82938 5.88020 5.94656 6.01282 6.09941 6.32534 6.56226 6.59557 6.73404 7.00269 7.05041 7.14421 7.62130 7.75170 7.80519 7.96257 8.38747 8.87407 9.01198 9.59214 11.08455 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002155 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.191041 B =12990.918973 C =13711.407073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.469 5.469 4 C 0.208 3.792 5 C -0.036 4.036 6 C -0.103 4.103 7 C 0.023 3.977 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 N -0.291 5.291 17 N -0.320 5.320 18 C 0.335 3.665 19 N -0.452 5.452 20 C 0.015 3.985 21 C 0.062 3.938 22 C 0.119 3.881 23 N -0.730 5.730 24 C 0.511 3.489 25 C -0.173 4.173 26 O -0.547 6.547 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.404 0.596 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 4.391 26.343 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.164 5.164 4 C -0.060 4.060 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.014 4.014 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 N -0.129 5.129 17 N -0.165 5.165 18 C -0.022 4.022 19 N -0.176 5.176 20 C -0.132 4.132 21 C -0.066 4.066 22 C -0.005 4.005 23 N -0.383 5.383 24 C 0.298 3.702 25 C -0.232 4.232 26 O -0.425 6.425 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.238 0.762 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.708 4.533 26.538 27.177 hybrid contribution 0.216 -0.716 -0.714 1.034 sum -3.492 3.817 25.824 26.337 Atomic orbital electron populations 1.22256 0.94004 1.03476 1.03256 1.21940 0.95556 0.78968 1.05717 1.46280 1.50361 1.13755 1.05955 1.25296 1.00924 0.87575 0.92183 1.20376 1.00932 1.02697 0.83596 1.21656 0.94281 0.98948 0.99253 1.19094 0.97092 0.96796 0.88408 1.21178 0.97800 1.40836 0.96165 0.92784 1.25005 0.96121 0.95940 0.97300 1.69943 1.27139 1.47777 1.08542 0.86661 0.83565 0.79635 0.78170 1.20296 1.21271 1.20193 1.74013 1.17828 1.18805 1.02298 1.74525 1.22852 1.14635 1.04469 1.22240 1.03764 0.88574 0.87620 1.58395 1.12979 1.49723 0.96521 1.22776 0.86681 1.02041 1.01711 1.22118 0.98822 0.93964 0.91676 1.21312 0.95827 0.94276 0.89106 1.45966 1.53969 1.25151 1.13214 1.20827 0.80639 0.86929 0.81761 1.21883 1.00391 1.00436 1.00501 1.90742 1.53559 1.25599 1.72552 0.91281 0.90015 0.92108 0.87838 0.88216 0.90375 0.88478 0.92425 0.93576 0.96503 0.96149 0.92924 0.90250 0.89349 0.93932 0.88849 0.92004 0.91103 0.90272 0.76176 0.88770 0.88780 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.00 37.16 0.37 -1.03 16 2 C 0.10 1.02 6.10 -4.04 -0.02 1.00 16 3 N -0.47 -6.40 2.81 -114.09 -0.32 -6.72 16 4 C 0.21 3.40 7.32 -154.02 -1.13 2.27 16 5 C -0.04 -0.59 5.53 -27.89 -0.15 -0.75 16 6 C -0.10 -2.05 5.13 -26.73 -0.14 -2.18 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 8 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 9 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 12 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 N -0.29 -5.35 12.18 32.99 0.40 -4.95 16 17 N -0.32 -5.35 11.42 30.31 0.35 -5.00 16 18 C 0.33 4.62 6.88 -318.87 -2.19 2.43 16 19 N -0.45 -4.66 4.74 -182.38 -0.86 -5.53 16 20 C 0.02 0.12 9.42 60.06 0.57 0.68 16 21 C 0.06 0.54 4.49 -3.82 -0.02 0.53 16 22 C 0.12 0.93 5.62 -4.04 -0.02 0.91 16 23 N -0.73 -4.82 5.56 -60.29 -0.33 -5.15 16 24 C 0.51 4.21 7.94 -10.99 -0.09 4.13 16 25 C -0.17 -0.72 10.30 36.01 0.37 -0.35 16 26 O -0.55 -7.09 17.10 5.55 0.09 -6.99 16 27 H 0.07 0.63 7.78 -51.93 -0.40 0.23 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 6.09 -51.93 -0.32 0.16 16 30 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 1.12 7.61 -51.93 -0.40 0.73 16 33 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 0.57 5.27 -51.93 -0.27 0.30 16 40 H 0.09 0.54 6.09 -51.93 -0.32 0.22 16 41 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 42 H 0.09 0.93 8.00 -51.93 -0.42 0.51 16 43 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.07 0.56 6.37 -51.93 -0.33 0.23 16 45 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 46 H 0.40 1.65 8.47 -40.82 -0.35 1.31 16 47 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -35.83 401.78 -10.16 -46.00 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -8.25 Total: -3.33 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -3.01 Total: -5.23 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.04 Total: -52.98 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: 0.09 Total: -6.99 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.83 -10.16 -46.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339310713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.583 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds