Wall clock time and date at job start Tue Mar 31 2020 14:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46868 * 2 1 4 4 C 1.36737 * 127.13725 * 275.52336 * 3 2 1 5 5 C 1.50698 * 126.34521 * 359.97438 * 4 3 2 6 6 C 1.52993 * 109.47047 * 270.01327 * 5 4 3 7 7 C 1.53001 * 109.47352 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47517 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99940 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00115 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00058 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00013 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46994 * 60.00090 * 12 10 8 14 14 H 1.48499 * 109.47032 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47420 * 300.00250 * 12 10 8 16 16 N 1.30291 * 107.30344 * 180.02562 * 4 3 2 17 17 N 1.28527 * 110.05636 * 0.02562 * 16 4 3 18 18 C 1.31214 * 109.86171 * 0.02562 * 17 16 4 19 19 N 1.38581 * 126.47664 * 179.73860 * 18 17 16 20 20 C 1.46894 * 111.00130 * 107.08673 * 19 18 17 21 21 C 1.46902 * 110.99594 * 343.13715 * 19 18 17 22 22 C 1.52999 * 109.47024 * 189.99804 * 21 19 18 23 23 N 1.46498 * 109.47376 * 179.97438 * 22 21 19 24 24 C 1.34777 * 120.00403 * 180.02562 * 23 22 21 25 25 C 1.50700 * 120.00549 * 180.02562 * 24 23 22 26 26 O 1.21286 * 119.99884 * 359.97438 * 24 23 22 27 27 H 1.08997 * 109.47300 * 66.17760 * 1 2 3 28 28 H 1.09001 * 109.47299 * 186.18442 * 1 2 3 29 29 H 1.09003 * 109.47257 * 306.17887 * 1 2 3 30 30 H 1.08994 * 109.47009 * 240.00152 * 2 1 3 31 31 H 1.08996 * 109.47241 * 119.99879 * 2 1 3 32 32 H 1.09001 * 109.47145 * 30.01807 * 5 4 3 33 33 H 1.09004 * 109.46705 * 150.01663 * 5 4 3 34 34 H 1.09001 * 109.47540 * 300.00239 * 6 5 4 35 35 H 1.09004 * 109.47093 * 60.00574 * 6 5 4 36 36 H 1.09001 * 109.46863 * 300.00494 * 7 6 5 37 37 H 1.08997 * 109.47231 * 59.99769 * 7 6 5 38 38 H 0.97002 * 120.00253 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.47157 * 65.72308 * 20 19 18 40 40 H 1.08998 * 109.47225 * 185.72317 * 20 19 18 41 41 H 1.09003 * 109.47636 * 305.72654 * 20 19 18 42 42 H 1.09000 * 109.47136 * 309.99668 * 21 19 18 43 43 H 1.08998 * 109.47409 * 70.00314 * 21 19 18 44 44 H 1.08998 * 109.47595 * 300.00440 * 22 21 19 45 45 H 1.09008 * 109.47290 * 60.00308 * 22 21 19 46 46 H 0.96998 * 120.00073 * 0.02562 * 23 22 21 47 47 H 1.09003 * 109.47248 * 89.99555 * 25 24 23 48 48 H 1.08993 * 109.47046 * 209.99890 * 25 24 23 49 49 H 1.09001 * 109.46544 * 329.99637 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1945 2.1946 -1.0850 5 6 1.9211 1.8368 -2.5231 6 6 3.1823 1.2374 -3.1481 7 6 2.9050 0.8747 -4.6085 8 6 4.1471 0.2837 -5.2239 9 1 5.0445 0.1769 -4.6326 10 6 4.1379 -0.1209 -6.5420 11 7 3.0450 0.0086 -7.2620 12 14 5.6778 -0.8528 -7.3051 13 1 6.0678 -2.0752 -6.5574 14 1 5.4085 -1.2049 -8.7224 15 1 6.7811 0.1391 -7.2420 16 7 2.6436 3.3357 -0.6450 17 7 2.7627 3.2989 0.6342 18 6 2.3935 2.1224 1.0826 19 7 2.3895 1.7090 2.4053 20 6 1.0189 1.6278 2.9274 21 6 3.2175 2.5937 3.2358 22 6 3.3928 1.9738 4.6235 23 7 4.2190 2.8557 5.4516 24 6 4.5086 2.5111 6.7220 25 6 5.3581 3.4186 7.5740 26 8 4.0847 1.4711 7.1799 27 1 -0.3634 0.4151 -0.9401 28 1 -0.3634 -1.0217 0.1107 29 1 -0.3634 0.6066 0.8295 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.1115 1.1084 -2.5687 33 1 1.6344 2.7336 -3.0724 34 1 3.9919 1.9658 -3.1025 35 1 3.4690 0.3405 -2.5989 36 1 2.0953 0.1464 -4.6544 37 1 2.6185 1.7716 -5.1575 38 1 3.0386 -0.2756 -8.1894 39 1 0.4764 0.8411 2.4030 40 1 1.0488 1.4003 3.9929 41 1 0.5142 2.5816 2.7735 42 1 4.1942 2.7211 2.7689 43 1 2.7305 3.5642 3.3303 44 1 2.4162 1.8462 5.0905 45 1 3.8799 1.0032 4.5291 46 1 4.5578 3.6876 5.0856 47 1 4.7178 4.1238 8.1039 48 1 5.9165 2.8220 8.2953 49 1 6.0544 3.9662 6.9389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339310713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:42 Heat of formation + Delta-G solvation = 9.995393 kcal Electronic energy + Delta-G solvation = -27135.860547 eV Core-core repulsion = 23326.192232 eV Total energy + Delta-G solvation = -3809.668315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.09066 -40.67688 -39.04065 -37.04595 -36.38341 -35.68040 -34.34715 -31.93066 -31.60016 -31.13755 -29.28740 -28.96519 -26.92909 -25.61370 -24.88686 -23.75037 -22.31604 -21.91860 -21.40641 -21.31694 -18.63009 -18.32516 -17.85770 -17.63566 -17.33221 -16.82406 -16.55391 -16.54807 -16.05264 -15.78686 -15.61270 -15.18466 -14.99585 -14.61942 -14.43539 -14.20186 -14.16355 -13.80418 -13.52495 -13.33161 -13.26162 -13.09164 -12.94895 -12.79758 -12.68139 -12.61428 -12.54179 -12.44162 -12.37877 -12.27553 -11.74062 -11.48518 -11.38441 -11.26556 -11.17404 -11.04111 -10.64446 -10.52998 -10.16243 -9.47694 -8.18712 -6.28701 0.69284 1.12193 1.40832 1.42950 1.50871 1.62757 1.72312 2.10988 2.41903 2.74788 3.14654 3.34216 3.60270 3.63456 3.81380 3.87477 3.93830 3.99079 4.00787 4.26446 4.32510 4.33733 4.36740 4.40040 4.47401 4.51963 4.56616 4.58524 4.67502 4.69758 4.78293 4.82804 4.91505 5.00928 5.04081 5.11409 5.11800 5.16967 5.22373 5.33786 5.43766 5.52140 5.55928 5.74916 5.86344 6.10742 6.26671 6.52382 6.86719 7.22397 7.39833 7.67330 8.92263 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002155 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.191041 B =12990.918973 C =13711.407073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.466 5.466 4 C 0.198 3.802 5 C -0.023 4.023 6 C -0.085 4.085 7 C 0.028 3.972 8 C -0.545 4.545 9 H 0.054 0.946 10 C 0.004 3.996 11 N -0.928 5.928 12 Si 0.959 3.041 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.272 1.272 16 N -0.326 5.326 17 N -0.351 5.351 18 C 0.350 3.650 19 N -0.451 5.451 20 C 0.015 3.985 21 C 0.070 3.930 22 C 0.129 3.871 23 N -0.720 5.720 24 C 0.506 3.494 25 C -0.165 4.165 26 O -0.601 6.601 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.006 0.994 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.417 0.583 47 H 0.111 0.889 48 H 0.091 0.909 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 3.831 27.911 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.160 5.160 4 C -0.071 4.071 5 C -0.063 4.063 6 C -0.123 4.123 7 C -0.009 4.009 8 C -0.583 4.583 9 H 0.072 0.928 10 C -0.194 4.194 11 N -0.568 5.568 12 Si 0.784 3.216 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.197 1.197 16 N -0.165 5.165 17 N -0.195 5.195 18 C -0.008 4.008 19 N -0.176 5.176 20 C -0.131 4.131 21 C -0.058 4.058 22 C 0.004 3.996 23 N -0.374 5.374 24 C 0.295 3.705 25 C -0.224 4.224 26 O -0.482 6.482 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.056 0.944 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.255 0.745 47 H 0.129 0.871 48 H 0.110 0.890 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.486 3.996 28.110 28.605 hybrid contribution 0.131 -0.550 -1.136 1.269 sum -3.355 3.446 26.974 27.399 Atomic orbital electron populations 1.22238 0.92217 1.05054 1.02867 1.22258 0.97024 0.77125 1.06360 1.46443 1.49827 1.14602 1.05081 1.25023 1.01670 0.87887 0.92494 1.20129 0.99592 1.02832 0.83742 1.21344 0.95550 0.98864 0.96587 1.18976 0.95747 0.95207 0.91009 1.21619 0.98799 1.41052 0.96800 0.92808 1.25878 0.99342 0.96341 0.97883 1.70059 1.29167 1.48652 1.08901 0.85596 0.79575 0.79069 0.77391 1.19196 1.20690 1.19682 1.73916 1.18874 1.20281 1.03417 1.74437 1.24796 1.16376 1.03914 1.22589 1.01496 0.87808 0.88893 1.58574 1.14561 1.49391 0.95079 1.22888 0.85061 1.02202 1.02998 1.22059 0.98016 0.94040 0.91676 1.21129 0.96071 0.93762 0.88600 1.45929 1.53257 1.25379 1.12796 1.21578 0.80206 0.86634 0.82062 1.21904 1.00359 0.99941 1.00237 1.90717 1.55812 1.28035 1.73620 0.92366 0.87568 0.91633 0.88263 0.86516 0.88228 0.88900 0.94087 0.92989 0.97528 0.98469 0.92744 0.89259 0.87253 0.94371 0.90087 0.91587 0.90723 0.91671 0.74538 0.87051 0.89015 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.00 71.98 0.72 -1.60 16 2 C 0.09 1.72 6.10 86.38 0.53 2.25 16 3 N -0.47 -12.22 2.81 -514.87 -1.45 -13.66 16 4 C 0.20 6.45 7.32 137.64 1.01 7.45 16 5 C -0.02 -0.76 5.53 29.85 0.16 -0.60 16 6 C -0.08 -3.41 5.13 30.59 0.16 -3.26 16 7 C 0.03 1.40 4.97 29.85 0.15 1.55 16 8 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 9 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 10 C 0.00 0.21 5.46 84.65 0.46 0.68 16 11 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 12 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 N -0.33 -12.13 12.18 -49.54 -0.60 -12.74 16 17 N -0.35 -11.69 11.42 -58.00 -0.66 -12.35 16 18 C 0.35 9.33 6.88 260.11 1.79 11.12 16 19 N -0.45 -8.61 4.74 -730.94 -3.46 -12.07 16 20 C 0.01 0.20 9.42 127.69 1.20 1.40 16 21 C 0.07 1.14 4.49 86.30 0.39 1.53 16 22 C 0.13 1.86 5.62 86.38 0.49 2.35 16 23 N -0.72 -8.46 5.56 -463.05 -2.57 -11.04 16 24 C 0.51 7.75 7.94 87.66 0.70 8.44 16 25 C -0.17 -1.03 10.30 71.24 0.73 -0.29 16 26 O -0.60 -15.41 17.10 -3.05 -0.05 -15.47 16 27 H 0.06 0.96 7.78 -2.39 -0.02 0.94 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.86 6.09 -2.39 -0.01 0.85 16 30 H 0.10 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.12 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.10 2.80 7.61 -2.39 -0.02 2.78 16 33 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.09 1.04 5.27 -2.39 -0.01 1.03 16 40 H 0.11 1.05 6.09 -2.39 -0.01 1.03 16 41 H 0.04 0.57 8.11 -2.39 -0.02 0.55 16 42 H 0.08 1.56 8.00 -2.39 -0.02 1.54 16 43 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 44 H 0.07 1.05 6.37 -2.39 -0.02 1.03 16 45 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.42 2.62 8.47 -92.71 -0.79 1.84 16 47 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -78.92 401.78 2.38 -76.54 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.16 Total: 9.07 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 8.71 Total: 0.61 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -8.46 Total: -116.77 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.05 Total: -15.47 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -78.92 2.38 -76.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339310713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.534 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds